Os07g0693500

From RiceWiki
Revision as of 08:54, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0693500| Description = Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L). Splice isoform Ex1A-3| Version = NM_001067265.1 GI...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os07g0693500

Description

Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L). Splice isoform Ex1A-3

Version

NM_001067265.1 GI:115474262 GeneID:4344386

Length

6691 bp

Definition

Oryza sativa Japonica Group Os07g0693500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:30165542..30172232

Sequence Coding Region

30165639..30165903,30166402..30166586,30167241..30167430,30167727..30167905,30168000..30168051
,30168163..30168290,30168657..30168836,30168946..30169013,30169101..30169243
,30169419..30169480,30169611..30169724,30169917..30170057,30170417..30170569
,30170710..30170763,30170839..30170949,30171076..30171249,30171337..30171417
,30171525..30171623,30171726..30171794

Expression

GEO Profiles:Os07g0693500

Genome Context

<gbrowseImage1> name=NC_008400:30165542..30172232 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:30165542..30172232 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggactccacctacgccctccacctcgccgtcgccaccctcctcggcgcctccttcgccgccgcctccgcctactatatgcaccgcaagaccctcgaccagctcctccgcttcgcccgctcccttgaccgcgaccaccgccgccgcaaccgccacctcctcgacgccgacgacgacgatgacgacgaccctcccagagaccacgatcgccgcaccacccttcccatcccaccgggccttccgccacttcacaccggccgagaaggaaagccaattatctcaccagcttccaccaaaagagttggacctttggttagacctactacaccaagatcccctgttcctactgtcagtgcatttgaaactattgaagattcagatgacgatgatgagaatattgccccagatgccaaaaacaatgccgtttccttgctcacaaatggaactattggatcagatccccttccgggtaaagcaagtcagaatggggacacaaaaccagtaccatcaacaaacatgattagatctcaaagtgcaacaggcagtctgcatggggcccagcacaatccagttgcagctgatattcttcgaaaggaacctgaacatgagactttcagtaggatcaatataacagctgttgagactccatctcctgatgaaattgaagcatacaaggttcttcagaaatgtcttgagctacgagagaagtacatgtttagagaagaagttgctccatgggagaaggaaatcataactgatcctagtactccaaaacctaatcctaaccctttctattacgagcagcagactaaaactgaacatcattttgaaatggttgatggtgttattcatgtataccccaataaagacgctaaagaaagaatctatcctgttgctgatgctactaccttttttactgatatgcactatatccttcgtgtgttggctgctggggatattcgaactgtatgttataaacgtttaaatcttctagaacagaaattcaatcttcatttgatggtcaatgccgatagagaactacttgctcagaaagctgcaccccatcgggacttctacaatgtcaggaaggttgatactcatgttcatcactctgcatgcatgaatcagaagcatctgttgagatttatcaagtccaagttgaggaaagaacctgacgaggttgtgatttttagagatggtacctatttgactcttaaggaggtttttgagagtttggacttgactggttatgacctcaatgttgatctcttagatgtgcatgccgataaaagtacattccatcgctttgacaagttcaatttgaagtataatccttgtggccaatcccggctgagggagatctttcttaaacaggacaaccttattcaaggccgatttcttgctgaattgacaaaagaagtattttctgatcttgaagcaagtaaatatcagatggctgagtatagaatatctatctatgggagaaagaaaagtgagtgggatcagatggcaagctggatagtgaataatgaattgtacagcgagaatgttgtttggttaattcagattcctcggatatacaatgtatacagggagatgggaacaatcaattctttccagaacctccttgacaatatttttctgcctctttttgaagtaactgttgatcctgcttcacatcctcagctccatgttttcttgcaacaggtcgttgggctggatttagtggatgatgaaagcaaaccagagagacgcccaacaaaacacatgcctacacctgagcaatggactaatgttttcaatccagcatatgcatattatgtgtactattgttatgctaacttgtacacgctgaacaagcttcgtgagtccaagggtatgacaacaatcaaacttcgtccacactgtggggaggctggagatattgatcatcttgctgcagcatttcttacttctcataatattgctcacggggttaatttaaagaagtcccctgtcctccagtatctgtattacctagctcagattggtcttgccatgtctcctttgagcaacaactcattgtttattgattatcaccgaaaccctttcccaacatttttcctaagaggccttaacgtttctctatcaaccgatgaccctttgcaaattcacctgacaaaagaacctttggttgaagaatatagcatcgctgcttcgctgtggaagctaagttcatgcgacctatgtgaaattgctaggaattctgtgtaccagtctggtttctctcataggctcaagtcacactggattgggagaaactactacaaaagaggtcatgatggcaatgacattcaccagacaaatgttcctcacatcaggattgaattccgacacactatttggaaagaagaaatggagctaatacatctgaggaatgttgatataccggaagaaattgataggtga</cdnaseq>

Protein Sequence

<aaseq>MDSTYALHLAVATLLGASFAAASAYYMHRKTLDQLLRFARSLDR DHRRRNRHLLDADDDDDDDPPRDHDRRTTLPIPPGLPPLHTGREGKPIISPASTKRVG PLVRPTTPRSPVPTVSAFETIEDSDDDDENIAPDAKNNAVSLLTNGTIGSDPLPGKAS QNGDTKPVPSTNMIRSQSATGSLHGAQHNPVAADILRKEPEHETFSRINITAVETPSP DEIEAYKVLQKCLELREKYMFREEVAPWEKEIITDPSTPKPNPNPFYYEQQTKTEHHF EMVDGVIHVYPNKDAKERIYPVADATTFFTDMHYILRVLAAGDIRTVCYKRLNLLEQK FNLHLMVNADRELLAQKAAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPD EVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSR LREIFLKQDNLIQGRFLAELTKEVFSDLEASKYQMAEYRISIYGRKKSEWDQMASWIV NNELYSENVVWLIQIPRIYNVYREMGTINSFQNLLDNIFLPLFEVTVDPASHPQLHVF LQQVVGLDLVDDESKPERRPTKHMPTPEQWTNVFNPAYAYYVYYCYANLYTLNKLRES KGMTTIKLRPHCGEAGDIDHLAAAFLTSHNIAHGVNLKKSPVLQYLYYLAQIGLAMSP LSNNSLFIDYHRNPFPTFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASLWKLSSC DLCEIARNSVYQSGFSHRLKSHWIGRNYYKRGHDGNDIHQTNVPHIRIEFRHTIWKEE MELIHLRNVDIPEEIDR</aaseq>

Gene Sequence

<dnaseqindica>98..362#861..1045#1700..1889#2186..2364#2459..2510#2622..2749#3116..3295#3405..3472#3560..3702#3878..3939#4070..4183#4376..4516#4876..5028#5169..5222#5298..5408#5535..5708#5796..5876#5984..6082#6185..6253#aagaggagaagagaagggaagagcccaagcaaaagcaaaagcccagaaagaaggaagggaaaccccacgcggaggcggagagcggagtggcggcgggatggactccacctacgccctccacctcgccgtcgccaccctcctcggcgcctccttcgccgccgcctccgcctactatatgcaccgcaagaccctcgaccagctcctccgcttcgcccgctcccttgaccgcgaccaccgccgccgcaaccgccacctcctcgacgccgacgacgacgatgacgacgaccctcccagagaccacgatcgccgcaccacccttcccatcccaccgggccttccgccacttcacaccggccgagaaggtacccccacccccacatttccttcctttttcactagtcatatactgttcccttgtgacttgtgatcggagcggcgcaacttactcatgcgtatcatctaaggattcattgtataatgtgcgcgaccatgtgattactagctcactagctcttcattcgcgtgtggaggggttcatccatcccctctgatttactacttcctaggtgtagattattatttttaaaatcatattcagggtttgtgcatctgggggatttttgacccccaaagaaacatccctcaaactgcacccaactatccgcatgtatatctgtcttcaatacttgtaatcatatctgcgtagtgaatctagtgatgcttttttttttcaatgaaacaaaacggattttaatcatggtgcactagtgagttgctttatgatcacacacctttgcactgattttctaatttgtaagtaattctgcatgatgctaatattgagcccttttacatatcaggaaagccaattatctcaccagcttccaccaaaagagttggacctttggttagacctactacaccaagatcccctgttcctactgtcagtgcatttgaaactattgaagattcagatgacgatgatgagaatattgccccagatgccaaaaacaatgccgtttccttgctcacaaatggaactattgtaagtcctaagatgcatatgcttattttgccaagctatagcactacttttatttttctgggtgaattgcatctcaatggcatgaataaaatatctggaaatttgtaatctacgttgttgttttaactaaatggaaatttggccctattcaatgcaatcctaggaggttagcctccttgtattttgacatgttagcttatctgattatgttgcaagaataatcaggtaaagattctcatgttaagtttcaaggcaatgtaaacagaataattcctatgcatatttttttgttgtattgcaattatcgtgcatattttgttgcgagaaaattaaagtcatcttgaactggccatgcaaatcgcaatgttcactgatgcacttattcacagatacaatttcctcgctatttttttattgtcccctgctccatgtatttctttgttacatttttgcctatggggctgtttgctttgatgcctaaatcaaccctaccaaatttgggcaatgtttgggttgttaccttgcctatttggtagggtttgttttggcaacaaagtgaacagccccatgatgttctttttcagtggtaactctctacatgcaaatgtatgttttcttgtatttaatgtactaagattattcttcttatctcagggatcagatccccttccgggtaaagcaagtcagaatggggacacaaaaccagtaccatcaacaaacatgattagatctcaaagtgcaacaggcagtctgcatggggcccagcacaatccagttgcagctgatattcttcgaaaggaacctgaacatgagactttcagtaggatcaatataacagctgttggtatggtccacttttcccgtgccttatattaaatcaattctattttaagtccaattaatattgtttttactactcaaactctagccatgaccctgaacatggtgttctcagaaaaaaaaaatgttcacaccattagaattgtcccttttggtatcagttagaaattagaatgcattttattttatggattatctacgtgatagcgatgatttatgttgctgaaaatgaaacctgctattactattattattcacttacgtgttgcaacacttgcacctgtttttttttggttgcagagactccatctcctgatgaaattgaagcatacaaggttcttcagaaatgtcttgagctacgagagaagtacatgtttagagaagaagttgctccatgggagaaggaaatcataactgatcctagtactccaaaacctaatcctaaccctttctattacgagcagcagactaaaactgaagtgagtgtgtttccctatattttctgcatattaacgatacaacacgttttcctgctctgctttctgtactctaattttgttttccttccttcagcatcattttgaaatggttgatggtgttattcatgtataccccaataaagacggtgagtaacaaattattctttctcttttagtttacgactactcatattttgtcgaagttttttcttttcatgttcgtcgtcacttatttttgtcttcctctgttgctgcagctaaagaaagaatctatcctgttgctgatgctactaccttttttactgatatgcactatatccttcgtgtgttggctgctggggatattcgaactgtatgttataaacgtttaaatcttctagaacaggtaattcttttaaagtggttctttcaatgcttgtatttgctgtatgtgtttgagcctagcaacaagatatgtgaaatcttgcaatggcagcaaaaggtggtacagtactccaggctacatgcaatgttaatatataatctcaagcatatagcatacaaaagaatccctgatgtggccaagatttttttgtgcatctaacatttgtaggctagtagtgtttgctggcatatattgaatgtgctccagactggactgtcaagttaacttgattcataaatctcactgaacacatcggaatgggccatggctaggtttcttttcaattatgtacatttactatcgttttcactcttgtggatttttcagaaattcaatcttcatttgatggtcaatgccgatagagaactacttgctcagaaagctgcaccccatcgggacttctacaatgtcaggaaggttgatactcatgttcatcactctgcatgcatgaatcagaagcatctgttgagatttatcaagtccaagttgaggaaagaacctgacgaggtgcacctattttcttttcatcaatccctgtggttttttttctcatgtggaatatgaaggttctttgtctgctctctacttaaaaatttcaaaaattgcatttgtgcaggttgtgatttttagagatggtacctatttgactcttaaggaggtttttgagagtttggacttgactgggtaactgaaattctttatgtgatggttctgtcatgtatcttttgattaagatattttttaactaacctgcttttgccactctgccagttatgacctcaatgttgatctcttagatgtgcatgccgataaaagtacattccatcgctttgacaagttcaatttgaagtataatccttgtggccaatcccggctgagggagatctttcttaaacaggacaaccttattcaaggtgcaccttttgttttgtcttgtttcctacgtatttcagtaatcgatgccattctcgttttgttatattttctttcagttgtcgagaactgttactcatgttctatgttgaccttattctcagcataccctgtatatgtacaattctttaaaatgttgtattgtcttcttaataggccgatttcttgctgaattgacaaaagaagtattttctgatcttgaagcaagtaaatatcaggtacttctttctttctttaccaatctcatatttgtgattctttaaggtggtgttgttcgctatttgtcatgtaacacattgtttacatattgctctgtctaattattcctactctcataatcttcaccagatggctgagtatagaatatctatctatgggagaaagaaaagtgagtgggatcagatggcaagctggatagtgaataatgaattgtacagcgagaatgttgtttggttaattcaggttatgacactctctgttgatgtcgtcgtctgcttctagtcataattttatctgagttttttttctaaacattcagtaatcaattcttaaactttgtaaaccaaacaaactagtatactctgtgcaggtaactattttatttttattttgccagagtagatttactgaaacattgtttaattttatctgcagattcctcggatatacaatgtatacagggagatgggaacaatcaattctttccagaacctccttgacaatatttttctgcctctttttgaagtaactgttgatcctgcttcacatcctcagctccatgttttcttgcaacaggtcagtggaactatttacgcagatgcgcactgcagtgctaatatagtactcaattgaatggagttaaaaaatgtattaattagaaaatatatgatatttgaacagtggtatgtgagtcttacaaagattgacctcttttagctgtcctatctagtggaaatagagggaataacattgataagttacaaggcttgctgcagcacctaaagcaatgctcagtaggatactttcctctaacataagggcacctctaatctcctcccattagtaactttatgcattactatgcctagtgtatgccttgttatgttgtggagcggagcagtcatcaccatcaattttgctgctgttttcttcaggtcgttgggctggatttagtggatgatgaaagcaaaccagagagacgcccaacaaaacacatgcctacacctgagcaatggactaatgttttcaatccagcatatgcatattatgtgtactattgttatgctaacttgtacacgctgaacaaggtatcattcatttgtccccagatctctgcctgttcttctccttcaaattctagttttcagattagcttctctctcaacatttatgatgtcctatcccctattggggctctcttggttgacttgagatttttgtgatgtagcttcgtgagtccaagggtatgacaacaatcaaacttcgtccacactgtggggaggtatatgctaatgcacatatttgagtattcatagatttaccccggaaaagttgcattgatgattcttgtcttcaggctggagatattgatcatcttgctgcagcatttcttacttctcataatattgctcacggggttaatttaaagaagtcccctgtcctccagtatctgtattacctagctcaggtaactagtattttgtgttcattcctcatcatttttttagcgcaacagctatcaattgaacacctatcaattttgttttctcggatctttgaataaactaaccatcttttgtttgcctataattagattggtcttgccatgtctcctttgagcaacaactcattgtttattgattatcaccgaaaccctttcccaacatttttcctaagaggccttaacgtttctctatcaaccgatgaccctttgcaaattcacctgacaaaagaacctttggttgaagaatatagcatcgctgcttcggtaactatctccttcactctagctctttggatatgtttagattccacttagatctgcttaatttggattgcctgtcattcttggcagctgtggaagctaagttcatgcgacctatgtgaaattgctaggaattctgtgtaccagtctggtttctctcataggctcaaggtatagattgctattgttcatttagcaattttgattttgttttcatatttttctctctgcctattttttttctccttgttttgataagacattttgctcttgtatagtcacactggattgggagaaactactacaaaagaggtcatgatggcaatgacattcaccagacaaatgttcctcacatcaggattgaattccgacacactgtatgtacttcgtactagcttctctgcctggagtctgatctcttcccgtacttgtcagcacgtttgtttctgttggtaattgcgtttgttactggcccgcagatttggaaagaagaaatggagctaatacatctgaggaatgttgatataccggaagaaattgataggtgaagacctggcaagaattttgcaaaccctgaagttacttggttgttgatgatggtcctggaaggcaccccatcttcctaccataaactttccaggtacaaccaagaccgtgcggtttctacttgcttgcggaagggaggagaaagggatctaggatgattctacttttcgatgaatctccgtagcgtgttgcgttccctagtagtaggattttgataaaagaaattatgttaggactgaggccgtaccataaaataagaaagatttgagtcatggaatactggaagtttaaacatacgcatgcatcgggggtcatatagtccaaaataacaatggaaaattgataaaccccaactagccaagggtctagtgaggttgcacatgtgctgtaagctattactagtacacgcgtacatttatacatgtgatgccgttcgatac</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0693500, RefSeq:Os07g0693500