Os08g0109500

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Revision as of 12:43, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0109500| Description = Bromodomain containing protein| Version = NM_001067347.1 GI:115474430 GeneID:4344472| Length = 7512 bp| Definition ...")
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Gene Name

Os08g0109500

Description

Bromodomain containing protein

Version

NM_001067347.1 GI:115474430 GeneID:4344472

Length

7512 bp

Definition

Oryza sativa Japonica Group Os08g0109500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:474442..481953

Sequence Coding Region

477076..477807,477925..478002,478617..478854,479477..479552,480167..480308
,480673..480966,481384..481596

Expression

GEO Profiles:Os08g0109500

Genome Context

<gbrowseImage1> name=NC_008401:474442..481953 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:474442..481953 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagcgcaagcgtgggcgtaagatgggcaagaagggcaagttgaaagcttccatcacagcggatgcttctccaatgtccccgtccagcccgagcaccgtggatgcttcctcaaagtccccctccagcccaagcacagaggagaacggcaccagcccagcgcatcatcaggcagataatgcgcctgttattgctccgccaccagtgcctgaaccagcacctcctgagccggagaagccagccgtgtctactgacgtacagaatgctaagccaaaagtctatagccgagtcaggttgaagttcaaatctgccaaagtgttggagacgcaccagggtccttcagaagcaaaagcacctgttgatggtggtggtggtaaacctgcaagtgctgctcctgaagcgagcaaagaagttgcggagaaggctattgtatcaccagacggacagaaagatgcgcaggcagcagaattgagtggttctgataaggataagatggcaagaaaagtagcaagcataaatatcaagtctgtaggattatcttcggtagaagataaaaatcaggacaggaaagctgattcagtcagtgaacctcttccaagcaagcaggaaaccgtattggaaaatgtagaaagcgagactgcattggagccgagaagctcacaagagttggaggtaaagcaggctacgccagaacgtcagcgagatgacagagagctaactgctgcacttgaagctattaagaaagtcatgaagatggatgcagctgagccgttcaacacaccggtggaccctgttgctctaggaatacctgattattttgatattattgatactcctatggattttggcacaatatgtcaaaatctagaacgtggtgataagtatatgaactcggaggatgtgtataaggacgtgcaatttatatgggataattgtaccaagtacaacagtaaaggtgattacattatagagcttatgaaacgggtgaagaagggcttcatgaaaaactggctggcagcaggcttgtattctgatgcgcaggagaatggtggcaatgataacacaggcgatgaggatgtcaaaggttcaaaaggcaagtctaagcaaaaacggcggcgcctagggaatgatcgacacaaaaatgactgtgcatgtgctgtttgtcaagttacacgccgcaaaaaggaaaaggatgaaatcttggctgtcattgaaaacgatacagctgcagtgaatagtaacatttctgaccagcaaatcatggaggtagactcaggcattaataacgctggtagtcatgacactacctctagtcaggagcaaccaccacaaactgatatgtacagaagaacagtggtagcagatgattcagggactctgatagaaaatcatgtgaaattcttcaacaaccagccactgccacatgattatgaggatgaaggctccagaccatactttgacgaaaaagaagaggtagactatacggatttgatcagtcaggaggaacatacatccagtcagcccaatgatggctccgaaattgcacaacaccaacataaggagccaacagaaacaagccaggagattgaaatggaggattatcccatacagaaggagaaccaatcattcttgcaactctgcgcacggcttttccccagcaaccagagttctgttttcaggggacgccattctctgttccgacagcaacagcggcaggtttcaatgaagggaagccctctgcatgcggccataacagcgataatgaaacggtag</cdnaseq>

Protein Sequence

<aaseq>MKRKRGRKMGKKGKLKASITADASPMSPSSPSTVDASSKSPSSP STEENGTSPAHHQADNAPVIAPPPVPEPAPPEPEKPAVSTDVQNAKPKVYSRVRLKFK SAKVLETHQGPSEAKAPVDGGGGKPASAAPEASKEVAEKAIVSPDGQKDAQAAELSGS DKDKMARKVASINIKSVGLSSVEDKNQDRKADSVSEPLPSKQETVLENVESETALEPR SSQELEVKQATPERQRDDRELTAALEAIKKVMKMDAAEPFNTPVDPVALGIPDYFDII DTPMDFGTICQNLERGDKYMNSEDVYKDVQFIWDNCTKYNSKGDYIIELMKRVKKGFM KNWLAAGLYSDAQENGGNDNTGDEDVKGSKGKSKQKRRRLGNDRHKNDCACAVCQVTR RKKEKDEILAVIENDTAAVNSNISDQQIMEVDSGINNAGSHDTTSSQEQPPQTDMYRR TVVADDSGTLIENHVKFFNNQPLPHDYEDEGSRPYFDEKEEVDYTDLISQEEHTSSQP NDGSEIAQHQHKEPTETSQEIEMEDYPIQKENQSFLQLCARLFPSNQSSVFRGRHSLF RQQQRQVSMKGSPLHAAITAIMKR</aaseq>

Gene Sequence

<dnaseqindica>2635..3366#3484..3561#4176..4413#5036..5111#5726..5867#6232..6525#6943..7155#gacgccgcagcctctccccaaccctaaccctaatctcctccctcgccgcccccgatcagcgcagcgccgcgccgcgccgcgggaggaaaaggaggaacgccttgccgcaagaccaccgaccgtcgattccacgccgctcttctccgctttctccgccacccccgccagggagaagactccgccctccgccatcagcaacaacgtcgtcttgatcttcatccgattggattggaggtcagctctcacagcaaggctctctattgctttccttaggcatcatgatatgttgcttgctctgtgctggttatatactaattcattggattcataattttgatgaagattggattgaagccttcaaaagaacggcaaatcctgaaaaatataatataggtttgatggtaggctcttaatttaaagttttagggttgtttttcttaccatacattgttggatggatgtaatgctttatgcttatggtacagtacagtatactttatgaaatttaatatggcagtgaagttacacatacagtacaccaaatctaccataaaaaagcagattgtgaaatttaatatggcagtcaagttactgatggaaacatccaaactgaatgtttttttttttgctataaagttatttttgttttttttttggctactcggcatgtgtacgtagctaaatttagcatgctgcatttaggaggcaagcaatttttttaactcttcctgatttggtttcatttcatttaggtggggcctgcgtggtccttcacctcccagcgtgagggcaccaggagaggaaggagaaggtaccctactttcaaccctagaaaataatttcgttttcgaaatctcaggaattggatcgatgaataaatttaggagcggcgaccggcgagcgagtgatgatgattagggctggatatcgagccaactcggctcgctccagcttgttaggataacgagctggctcggctcggctcgttatcctaatgagctaaaaggctagcttggctcgtttgaaagctcgagctagctcgtttagctcgcgagccagagcaatagaacaagggatgagcttgagcatagaaaaaacatagcaaatcttggcatcatcagcatcacttcatcacatagcaagcacgcaagcatcaccatcacttcatcaagcaagaagtcaagaacatataaagtcaactagaagcaaaaggggatgttgccgatggagtcgcgcagcagggccgaccagtttgcttgaccctggcgaggcttgctcgtcgtcgatgccatccatgctaattaacgccctcctccatctggtgacctcttgttcgttgcctgctgcggcccaccatccttcggcgatggtgggtgacggtggcggcacgctgggctctatgagaaagacgccggggccgctctgagacgtcggcgatgggagcggctgctgcaagcatcttgggtggtgctgctgcgagagtttccagcgagagtggtggctcatttggactgaaccgaacccaacgaatcaatccccttctacaacaagatgacgacctggcgtggagaaaggataaggttgggggaaaggataaggtcgtggacgatgagtggcgctgcggacgcacagcgctcgctgctggcggaggtggattagcaactggcaagggcgggaaaggataaggccgtggacgatgagcggcgccgcggacgcacagcgctcgctgctggcggaggtggattagcgactggcaaggggcgcaccgcgcgcgcgatggtggcggtggagcggtggagtgaaaaggagaggtcgagaggcaccagacagctagggttactgtgttagcagcatttctttatgtgcctatccgcctatgggcttggtggctttgtgggttggtcacgtgtggtctactgctgctgggttatcaaagctcattacggctcgcgagcagcttgcgagccagctcgagctggctcgttatctctaacgagttaaaaggctagctcggctcgttaggaaaatgaaacaagccaagtcgagccgagcttgtcacgagtcgagcgagctaacgagccacgagcttttcgtccaatcctaatgatgatgctgtagtccagttccaacctcgaattatcctttttttttctccgtattctgtcccaaaacaccaaaatccatggttcaaatcacctaaccaacctttggtttatctggtcgatccctcgaggttcctccacttgctccccgctatcaaggtttctggaaatccattctgactttgattttttttctctgtctgatgatgctgttggtgattccttggattggttgagagttattctgttccggtctgaatcctaatctcccagcaatccaatccgtacagttcgttgcgggttagtccaattcctgcgttacagagcattaattggagttaatttctaagaaaaaatttgggggaagttagatccaccccccatcctctccccttcttggtttgcttatactactcacctaaggtttacttacttagtattactcatggaatccactctacttgttaaaaaattgcagtgtgtacttctctgctggcctgtgtggtgaggtgatagctaaactaataggaagatgaagcgcaagcgtgggcgtaagatgggcaagaagggcaagttgaaagcttccatcacagcggatgcttctccaatgtccccgtccagcccgagcaccgtggatgcttcctcaaagtccccctccagcccaagcacagaggagaacggcaccagcccagcgcatcatcaggcagataatgcgcctgttattgctccgccaccagtgcctgaaccagcacctcctgagccggagaagccagccgtgtctactgacgtacagaatgctaagccaaaagtctatagccgagtcaggttgaagttcaaatctgccaaagtgttggagacgcaccagggtccttcagaagcaaaagcacctgttgatggtggtggtggtaaacctgcaagtgctgctcctgaagcgagcaaagaagttgcggagaaggctattgtatcaccagacggacagaaagatgcgcaggcagcagaattgagtggttctgataaggataagatggcaagaaaagtagcaagcataaatatcaagtctgtaggattatcttcggtagaagataaaaatcaggacaggaaagctgattcagtcagtgaacctcttccaagcaagcaggaaaccgtattggaaaatgtagaaagcgagactgcattggagccgagaagctcacaagagttggaggtaaagcaggctacgccagaacgtcagcgagatgacagagagctaactgctgcacttgaagtgagtataaatttggcacatctttatgtttggtctttttattgtgcaaacatgacatggtaaagatctacaaatacatggaagttacacagttaatttccttgatcttgctgccaggctattaagaaagtcatgaagatggatgcagctgagccgttcaacacaccggtggaccctgttgctctaggaatacctgtgagtatttttatttggtattgctaggtgtaatggttttcttcctttgaaatgataaccttttggtatctttataaattttgatcttgaaaacttgcttctcgtaaattttggtgtagtattcattgcttccaacgaacaggttcatatagatatatgttaatgtccgctagatatgtaatcattactgttgttccgggtagggaaagaaccgattccatggagggggtaactctataatcagtggcttgccttccttatctgatatctctaattgttatgtttgaatagcacattccatttctccgttctgtagctaaattttacaactcataggctataccttgccagatgggtcatcttgcttgcaagatgagttctgcactccagttcattttgttgtttcatgaacatagttgagagagtatgaaacaatcatcacaaataaaatttgtttgcaagctctgtagatttttgtaatagcatgtctcatgtttgttctattaccgtagtaaatttatatgctcttaaatctactggtactggattttttttcactttattagtcttccaacttttgtttatttgccatttacagttagcaaaatttgcaggattattttgatattattgatactcctatggattttggcacaatatgtcaaaatctagaacgtggtgataagtatatgaactcggaggatgtgtataaggacgtgcaatttatatgggataattgtaccaagtacaacagtaaaggtgattacattatagagcttatgaaacgggtgaagaagggcttcatgaaaaactggctggcagcaggcttgtattctgatgcgcaggagaatggtaagtattgctcaattggccatagttcattcttttgttcaatatcgttttcttctttttttccttgatgtcctataatctccgctgtcaaaacttcctagctcttgggtttaaattgccaccagttagctattagatcaccaaagattcctttatataattctaattttatttggacgtattattgtgaagctatgaaaagtaatggtcaacctcttatgatggagaccatagaataaaaaagagagagggagtaacttgaatatgagctcttgtcactagtacctgttttaattagtaagttctgtattctgtaaaatataaatgatttaatactgcaatatttattttatcattgatttattcagtctgtatggaagaaatacaaatctggttttctgttctaccatggactcatttactacataacacagtcaaataagaataatcttaaggtataataatgccattgtgccgccaacttttcacatttcgtggtggtgggtgttaaacagttctgtacacataacaggatgtccattttgggcaactatatagttcactacctgtatgaatgcatgcgttcatgtttatgatgtgttttatccaaacaaaaatataggtggcaatgataacacaggcgatgaggatgtcaaaggttcaaaaggcaagtctaagcaaaaacggcggcgcctagggtatgcaatttatcttctgacagccgcatgtgcaagtttcttttgattgctttattcaagaagctaaaccatcacgtgctttcaaatttgacggggcattcatttcagcaatcaaatctattagtagaaatttaaaacattgtggagtactgtttagattcgaaaggggttaaattcaacaaaacatgataatgcgttggaacaaaaatgataatactaagacatagttgtgtgctatgcatactaagacttacttaagtgctgatattgaccttttgtttgtttttaatttattcttgttatcggagttgcatgtttcgttttttggaaagcgtaaatctacctagcagaaccatgcctcttccattttaatcttttacagctcttaaggggctattgatggtatttcatttgcaactcagagtaaagtgatatcactgtaactctaggagcacatgttttttcacttaaatattccagtcagattaaggttattatagcaagattattttccactgacttctagtgaatacaaaagacagtagcctaatctgttgaaaaatctgtggttgtccttgttttcttacatgataatatgatatgtttaaatacaggaatgatcgacacaaaaatgactgtgcatgtgctgtttgtcaagttacacgccgcaaaaaggaaaaggatgaaatcttggctgtcattgaaaacgatacagctgcagtgaatagtaacatttctgaccagcaaatcatggaggttagaattgtcatccaaatctttgttctactgtgcatttcgtttatgcaccttgtctatttgaaacatttagtgtacacagattttttttctccatcttgatgttacctttcaattggagtgatatcttgtctatttgaagtatttaatgtacattggctttatttctccatcttgatgttcaataccatgaaagttttatctcatttgtctgcatgtacatattgaagtattgctcattacattcagcagatgcctgctacacactacatttgttttaagttctccaggtgttattgtaaagttgtttttccagccatgcagatcatcttcaccttgaactaacttatgcttcacataacaggtagactcaggcattaataacgctggtagtcatgacactacctctagtcaggagcaaccaccacaaactgatatgtacagaagaacagtggtagcagatgattcagggactctgatagaaaatcatgtgaaattcttcaacaaccagccactgccacatgattatgaggatgaaggctccagaccatactttgacgaaaaagaagaggtagactatacggatttgatcagtcaggaggaacatacatccagtcagcccaatgatggctccgaaattgcacaacaccaacataaggtaattttggacagaatatcagtgctgtttcaatattaccatgtatggtatgacattatttgacaattagaataggatcaacagtggaaaaaaaaggttcctaatagctcctgtgattcagtggctggtttgtccagcatgctctttaggctttatatttgtaatgagtaatgtgttggagtgttgcacgggttgatgcataatttgagtccatttcatcatcaagccatattgattgctcttctgttacctgtgcactctgctttcagtcacactcacatgcgctcctggtatgcctgcacatcgtgttctttttgtttgctaatacccatatataccatcatagtaggctggaaaaccatggtgcatagcatacctagaaattctaaacattggttttatttcatttcgtcacaggagccaacagaaacaagccaggagattgaaatggaggattatcccatacagaaggagaaccaatcattcttgcaactctgcgcacggcttttccccagcaaccagagttctgttttcaggggacgccattctctgttccgacagcaacagcggcaggtttcaatgaagggaagccctctgcatgcggccataacagcgataatgaaacggtaggagttttgtccctccaatggctgcttagcagcagccgtttcgtgtaaaggaagctcaaggcagcgttgtgactttgggaaagaaagctgtaccctgaagtcacgggagctggttggaataaaacaggttagttgaaacatatctttgagctcagaggctatagcttgatttaggtacgaaattagttgggagatacctgtctattgtatgacaattatctatgtgtaaggctgtaagcttcatatttgtatcaagataattgtgatagtcacatgttgccacattgcttaccgcgctggagtagggttgtacttgaaccttataattgtattgttggtgtcaaaagatttaattagt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0109500, RefSeq:Os08g0109500