Os08g0112500

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Revision as of 12:44, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0112500| Description = Similar to Cyclin-dependent protein kinase-like protein| Version = NM_001067366.1 GI:115474468 GeneID:4344491| Lengt...")
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Gene Name

Os08g0112500

Description

Similar to Cyclin-dependent protein kinase-like protein

Version

NM_001067366.1 GI:115474468 GeneID:4344491

Length

5334 bp

Definition

Oryza sativa Japonica Group Os08g0112500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:661198..666531

Sequence Coding Region

661552..661758,662184..662639,663065..663152,663264..663364,663751..663978
,664475..664792,664875..665159,665495..666058

Expression

GEO Profiles:Os08g0112500

Genome Context

<gbrowseImage1> name=NC_008401:661198..666531 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:661198..666531 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggctgtgtcagttcgaagcaattccatggcgaggagcagcgtggcggcgaggggaagccccggcggcgcccatctagcaactctctgaggcgtcttgttagttacaattccagcaagaggcatgagcactttgaggaggaggatgaagaaggtgtggttgtgtcagccacctcctccagtgctggacatcgtgtagggaatgatgtgagcacggctaggctcatccggaagccccccgcgccggtggttgaggctgtggctgtgcctgtggctgcattgccagatgaggcggcttctgtggcggttagcgtggttgatgtggagaggccagttgccgcgcctgcgaattggaggcgtgctccgaatggcgcggcggagcaagagcctaggagtggtggtacaaggagtgaggcgaaaccgaggattacagatgttgtgcccaatggagtgcagggggggcatgcggcagctggctggccaaggtggctcacagaggtcgcagcagaggcagtccgtgggtggcaacctcggaaggcagagtctttcgagaagttggacaagatagggcaaggtacatacagtagtgtttacaaagcacgtgatcttgagagtggaaaaattgtggcacttaagaaagttcggtttgccaacatggaccctgagagcgtgcggttcatggcaagggaaattcacatcttaagaagacttgatcacccaaatgttattaagcttgaaggtttggtgacgtcgcgcatgtctagtagcttgtatcttgtatttgaatacatggagcatgatctagcgggacttgcagctacacctggcataaagttcacagagcctcaggtcaagtgttacatgcaacaactactctctggacttgaacactgtcataatcgtggtgttttgcatcgggatataaagggcgcaaatctcctcattgacaacaatggtgttctcaaaatagcagactttggtctagccacattctttaatcctaaccaaaagcaacatttgacaagtcgtgtggtaacattatggtaccgacctcctgaactattgctgggtgctactaactatggtgctgctgttgatctctggagtgctggttgcattcttgcggaattgctgtctgggaagcctatcatgccagggcgaacagaggtggaacaattgcacaaaatatttaagctttgtggttcaccatcagaggatttctgggctaatttgaagttgtcacgtgctacaatattcaagccacaacatccttatcgtcgatgtgtgaatgatgtatacaaggatttccctcctccggctttagcgctattggattgtttacttgctgtagaacctcagaataggggtactgctgcttcggcccttggaagcgaattcttcacgacaaagccttatgcttgtgatccatcaagtctacctaaatatcctccaagcaaggaatatgatgctaagcttcgagacgaggaggctagaaggcaaagagcagctgcagttaaaggacatgaatctgaagctgggcgtagaaagcaacttccagcaccaaatggcaacaacgaattgcagcaacgacgggttcagcttaatccaaaaagcagcagtaataagtttattccaaaggaggatgctgtcactggcttcccaattgatcctccaggaagagctggagacaatgtttaccctcagcgtgcgcctctgatgcatgctggtcgttcatcctctactctgggccgatcaagtggcactgatcagaatgctcagaggttttacacatctcaaattgctgctgctgagatgtctactgcaactggtgggcagcgaggcaatgccactaagctgtcctccaaccttggggagagtgccaggagacaatatttgagagagcatcgatctagttcaagatatagtcaacttgctgctgctgaaccctctgacagacctgaatggacacaccaattccaagaaagaccatcatcttcccaccgcaaagatgatggggcagcaaataaggaacctactgtggtgaatggcgctaagaagagcaggatccactactcaggaccattaatgcctcctggagtaaacatggaagaaatccttcgagagcacgagcggcagatccaacaagctgtacggagggcgcgcctcgacatgggaaagggcaagaatcacgtcgagagagaccagtcggaatcgcttctgtacactacccagaatggcagaccgtag</cdnaseq>

Protein Sequence

<aaseq>MGCVSSKQFHGEEQRGGEGKPRRRPSSNSLRRLVSYNSSKRHEH FEEEDEEGVVVSATSSSAGHRVGNDVSTARLIRKPPAPVVEAVAVPVAALPDEAASVA VSVVDVERPVAAPANWRRAPNGAAEQEPRSGGTRSEAKPRITDVVPNGVQGGHAAAGW PRWLTEVAAEAVRGWQPRKAESFEKLDKIGQGTYSSVYKARDLESGKIVALKKVRFAN MDPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSSSLYLVFEYMEHDLAGLAATPG IKFTEPQVKCYMQQLLSGLEHCHNRGVLHRDIKGANLLIDNNGVLKIADFGLATFFNP NQKQHLTSRVVTLWYRPPELLLGATNYGAAVDLWSAGCILAELLSGKPIMPGRTEVEQ LHKIFKLCGSPSEDFWANLKLSRATIFKPQHPYRRCVNDVYKDFPPPALALLDCLLAV EPQNRGTAASALGSEFFTTKPYACDPSSLPKYPPSKEYDAKLRDEEARRQRAAAVKGH ESEAGRRKQLPAPNGNNELQQRRVQLNPKSSSNKFIPKEDAVTGFPIDPPGRAGDNVY PQRAPLMHAGRSSSTLGRSSGTDQNAQRFYTSQIAAAEMSTATGGQRGNATKLSSNLG ESARRQYLREHRSSSRYSQLAAAEPSDRPEWTHQFQERPSSSHRKDDGAANKEPTVVN GAKKSRIHYSGPLMPPGVNMEEILREHERQIQQAVRRARLDMGKGKNHVERDQSESLL YTTQNGRP</aaseq>

Gene Sequence

<dnaseqindica>4774..4980#3893..4348#3380..3467#3168..3268#2554..2781#1740..2057#1373..1657#474..1037#aaaggccacctcagtgagagagggaagggagggagggagggaggagggagagatctcctgctgcctcgcgatttccggcggcaaaaaggttcgattttgatccccgtctccggattcgcccagccccgatttgcccttgcggcgcggcctcgctggtttctgcaagtgatagagaaagatcccgattttaacagtggcagttcgtggcccgcccgcttctgcttctggttttgggcgattcggcggttgctggactggagggagtcgcgggtgcagtgttctggttcggatctgagcgggtgttgggtgttttcaactctaattcgggcgagcaatgagggttcttgatgcgtgacctgatgcgggaggcgtattgggagaagatctcttgaagtttttttttttttggttttggtttgtttggggggtttccttggagtggagtctcttgcccggatcgccacactcgttctatgggctgtgtcagttcgaagcaattccatggcgaggagcagcgtggcggcgaggggaagccccggcggcgcccatctagcaactctctgaggcgtcttgttagttacaattccagcaagaggcatgagcactttgaggaggaggatgaagaaggtgtggttgtgtcagccacctcctccagtgctggacatcgtgtagggaatgatgtgagcacggctaggctcatccggaagccccccgcgccggtggttgaggctgtggctgtgcctgtggctgcattgccagatgaggcggcttctgtggcggttagcgtggttgatgtggagaggccagttgccgcgcctgcgaattggaggcgtgctccgaatggcgcggcggagcaagagcctaggagtggtggtacaaggagtgaggcgaaaccgaggattacagatgttgtgcccaatggagtgcagggggggcatgcggcagctggctggccaaggtggctcacagaggtcgcagcagaggcagtccgtgggtggcaacctcggaaggcagagtctttcgagaagttggacaaggttcatatctctatgccgatctttaattttgtaacaaattcactatattgtttcataaaatgttaggaccttgatttgccatgtatattgtggtccatgcttattagtggttgagtatcatcgctcgctttataagtgcttgagtttaccgatggcatatgactgttatgagctaaactagacatgtctctagaactattttagtaatgacattcttgatagagtggtgtagtttgtcaactggattgcagcgattgatgagaattcaaattgctattgacctactgattcaatgcaactacaccttttctcatcctcacatttaaatatttcagatagggcaaggtacatacagtagtgtttacaaagcacgtgatcttgagagtggaaaaattgtggcacttaagaaagttcggtttgccaacatggaccctgagagcgtgcggttcatggcaagggaaattcacatcttaagaagacttgatcacccaaatgttattaagcttgaaggtttggtgacgtcgcgcatgtctagtagcttgtatcttgtatttgaatacatggagcatgatctagcgggacttgcagctacacctggcataaagttcacagagcctcaggtttccctcttgacatgttctttggttttcattgtgttgtcagtttcgatgttgtactcactatggaaaatgtccattttaggtcaagtgttacatgcaacaactactctctggacttgaacactgtcataatcgtggtgttttgcatcgggatataaagggcgcaaatctcctcattgacaacaatggtgttctcaaaatagcagactttggtctagccacattctttaatcctaaccaaaagcaacatttgacaagtcgtgtggtaacattatggtaccgacctcctgaactattgctgggtgctactaactatggtgctgctgttgatctctggagtgctggttgcattcttgcggaattgctgtctgggaagcctatcatgccagggcgaacagaggtattgtttagctattcatattctggacaaacttgcaacctaagattaacacagtattatctactgagataattttgatgttgccttgcataaagtatatcagtatctgccatttcttgtattgcacttccggacaaacctgaattatgctggactaaaaaaaatgaagctgctgaaggtgaatgcacctttgttgaatacagaatactcgacactatgaaccttgcatttgagatcttttgatcagttactatctatcagcttgtagtttgtacagccagatgtacaattataaattaaaatggttagctctagtttcagtgtgataaataatcactgcatattaccagatctatttttacatggacgaataccaataaaatttaacaatattccacattaaatttctactttagtgttgaatggtcatattgtttatcatgtttaataatctatgagtttgcgatgtttatttttgttgtccacattctttcaggtggaacaattgcacaaaatatttaagctttgtggttcaccatcagaggatttctgggctaatttgaagttgtcacgtgctacaatattcaagccacaacatccttatcgtcgatgtgtgaatgatgtatacaaggatttccctcctccggctttagcgctattggattgtttacttgctgtagaacctcagaataggggtactgctgcttcggcccttggaagcgaagtaagttctggccctgaaatttgtttatttgcatgcctgtgctaaggagaatccatggtctctcaaaaaaacatgtggaaacacacattatgttaaatctgccttttgtgtccatctccctgtaaatttcattgtcacaatattcgtttgatgagtcttaattatgaatctgtttattgtcacttctcgtatgatatgttgtttgtgaatggcatggaattatttagagaagtgaaacatcttttaagttgatatgagcaacaacattttgagctgttcctttttacttgatggtaattcatagagatttggctattcctgtataatctacaactggcctttttattgtgacgcactaatattaacccttttaccttggactgtagttcttcacgacaaagccttatgcttgtgatccatcaagtctacctaaatatcctccaagcaaggaatatgatgctaagcttcgagacgaggaggctagaaggtaaaccctgtggagaactaaagatgaattttgactagatggaatatatggtatctatcttcttttgctggcgatttctttatttgacctaagttcatgttttgcccacaggcaaagagcagctgcagttaaaggacatgaatctgaagctgggcgtagaaagcaacttccagcaccaaatggcaacaacgaattgcaggtaatgaaaacttatctttagattataaacttctcttagtattagatgataattgtcattcttaaggatatccagagttgagggttttctgacgcactatcactattgagcttccaaaatattattaattcctgcagaattttgaaaccttatgggaattcaaatactatatgctagttcccagtggttcaatgtattcatttaatacataaatacatgaatttgtgtagttagtacttggtagcagtcttgcagaactaatttgtgattcaatgtaatcgactcttgacttgtttggaagtttaccagtacagtagctgcagtttaaacattgcaattaatcacatagttgacattgcaagattgtgaaatataaactctgttgttcttctttctcaaatgactgctgttccatatctttgcagcaacgacgggttcagcttaatccaaaaagcagcagtaataagtttattccaaaggaggatgctgtcactggcttcccaattgatcctccaggaagagctggagacaatgtttaccctcagcgtgcgcctctgatgcatgctggtcgttcatcctctactctgggccgatcaagtggcactgatcagaatgctcagaggttttacacatctcaaattgctgctgctgagatgtctactgcaactggtgggcagcgaggcaatgccactaagctgtcctccaaccttggggagagtgccaggagacaatatttgagagagcatcgatctagttcaagatatagtcaacttgctgctgctgaaccctctgacagacctgaatggacacaccaattccaagaaagaccatcatcttcccaccgcaaagatgatggggcagcaaataaggaacctactgtggtaagttattttattgtcctatttggcttcacttggtcttgcctcctaacatccatcaggagaatgatccatagtattcaagccttgaaagctgagataaactttgggaaatttacccttaaaagcattcttggaagttatgaccagtgaacatgtgagtatggtttttatcagggaatgtagagtacatgttacctaaatctcttcacagaatggccctttcttattcctgagaaatatcacaaatggcctgtgtcctggatatggagtgcactgttttttctttgttcctaatattatgagacattctcatttatcaaggtcaacgatctatttcttacagaagatagtaatggaaaaaaatgcttccaaagtgcaggattgtatttttgtcatatgctgagaaattaaacctgtatgtgcaggtgaatggcgctaagaagagcaggatccactactcaggaccattaatgcctcctggagtaaacatggaagaaatccttcgagagcacgagcggcagatccaacaagctgtacggagggcgcgcctcgacatgggaaagggcaagaatcacgtcgagagagaccagtcggaatcgcttctgtacactacccagaatggcagaccgtaggcgaaaaaaacgctcaggatcgcgattcaatgtgttgtggagcccccatttcagccatgaaaaacaatagaaagtagcgtatgtttctgcgccgtcaaagcggagaggtttctttctgctagatgttccacccattgcagtggtttggttttcaccagcaaaaggaaacctgttcctgtagagattcaccgcctgtccaagcttagcatagggcgtcgaaaatatttgctgaagatttggttgtccacagccaccaattgtatatctcgagagagtatcctccccttgaaattgattcttacacctgttttttggcagatgacaagagaaaaaataatataatggaagtacaga</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0112500, RefSeq:Os08g0112500