Os08g0159800

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Revision as of 12:47, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0159800| Description = Zinc finger, CCCH-type domain containing protein| Version = NM_001067579.1 GI:115474894 GeneID:4344715| Length = 291...")
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Gene Name

Os08g0159800

Description

Zinc finger, CCCH-type domain containing protein

Version

NM_001067579.1 GI:115474894 GeneID:4344715

Length

2914 bp

Definition

Oryza sativa Japonica Group Os08g0159800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:3508097..3511010

Sequence Coding Region

3508097..3508380,3510191..3511010

Expression

GEO Profiles:Os08g0159800

Genome Context

<gbrowseImage1> name=NC_008401:3508097..3511010 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:3508097..3511010 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggattacaccaacgccatccacatcatcccggacgcggcgggccccgacgcctgggcgaacgcggcggcgcagggcggggacgccgggatatgggccaccgaggacgactacaacagccagtggaacgccgacggcggcggcggcggctcctcgagggccgggagcgagcagccacctccgggcaagaaatcccgcggcggcggcggcggcgaaggcggcgggaacacgagcaagtcgcgggcgatcgggaagatgttcttcaagacgaagctgtgctgcaagttcagggcggggacctgcccctacgtcaccaactgcaacttcgcccacggcatggaggagctccgcaagccgccgcccaactggcaggagatcgtcgcggcgcacgaggaggccacggaggcgagggaggagcaccagatccccatcatgacgtcgtcgggacccaccgccggcggcgacgcgggctgcggcggcggcggcggcggcggctccgggagggcctacaaggggaggcactgcaagaagttctacaccgacgagggatgcccctacggcgacgcgtgcacgttcctccacgacgagcagtccaaggccagggagagcgtcgcgatcagcctctcgccgagcgtcggcggcggcggcggtggcgggagctacaattctgcggccgccgcggccgcctccgcctccgccgcggcggggaatgggccgatgcagaagccgtcgaactggaagacgaggatctgtaacaagtgggagatgactgggtactgcccctttggcagcaaatgccacttcgctcatggagcagctgaactccacaagtatggtgggggacttgttgacatagacagcagggatgctgcagcaactcccgactccaagcaagctgtggtatctgcgaaagctccagcagagaccgctgctgcatccaccacagtgctccctcatgcagacgtgtaccatctaggcgtgcaggcgcagcgttctaccattgccggccaaaggtctgggcaggtacagaggcccattcagaaatggaagggccctgacaagatcagcaggatctatggtgactggatagacgaaaccgagtag</cdnaseq>

Protein Sequence

<aaseq>MDYTNAIHIIPDAAGPDAWANAAAQGGDAGIWATEDDYNSQWNA DGGGGGSSRAGSEQPPPGKKSRGGGGGEGGGNTSKSRAIGKMFFKTKLCCKFRAGTCP YVTNCNFAHGMEELRKPPPNWQEIVAAHEEATEAREEHQIPIMTSSGPTAGGDAGCGG GGGGGSGRAYKGRHCKKFYTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGGG GSYNSAAAAAASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELH KYGGGLVDIDSRDAAATPDSKQAVVSAKAPAETAAASTTVLPHADVYHLGVQAQRSTI AGQRSGQVQRPIQKWKGPDKISRIYGDWIDETE</aaseq>

Gene Sequence

<dnaseqindica>2631..2914#1..820#atggattacaccaacgccatccacatcatcccggacgcggcgggccccgacgcctgggcgaacgcggcggcgcagggcggggacgccgggatatgggccaccgaggacgactacaacagccagtggaacgccgacggcggcggcggcggctcctcgagggccgggagcgagcagccacctccgggcaagaaatcccgcggcggcggcggcggcgaaggcggcgggaacacgagcaagtcgcgggcgatcgggaagatgttcttcaagacgaagctgtgctgcaagttcagggcggggacctgcccctacgtcaccaactgcaacttcgcccacggcatggaggagctccgcaagccgccgcccaactggcaggagatcgtcgcggcgcacgaggaggccacggaggcgagggaggagcaccagatccccatcatgacgtcgtcgggacccaccgccggcggcgacgcgggctgcggcggcggcggcggcggcggctccgggagggcctacaaggggaggcactgcaagaagttctacaccgacgagggatgcccctacggcgacgcgtgcacgttcctccacgacgagcagtccaaggccagggagagcgtcgcgatcagcctctcgccgagcgtcggcggcggcggcggtggcgggagctacaattctgcggccgccgcggccgcctccgcctccgccgcggcggggaatgggccgatgcagaagccgtcgaactggaagacgaggatctgtaacaagtgggagatgactgggtactgcccctttggcagcaaatgccacttcgctcatggagcagctggtgagtttgcttgtttcatagtatgcatttgtcaaattcttgaattgttatatgttaccctgtgtttttagagataatttagcctattgtgatttgttctacggttgaatatgtagttattgaatctgtagttagtgtgtggatggtgcttcgtttcattttcggtagaccataatgtgcgatgaacttatcaatcttcatttgatctgtgaccttgtttcatcagagatttagtttgattggacataaaacctcacttgtgccctgatagctgtgacaattctaggtattaacaattgtttctctgatatacatcagggctgtgttgttttagttatttactagtacattgcatcacagctctaccttgaaatcttgttttattcatcaagtatatagcacacctttaggacaggaatatatccttcccaacatatttactgaactatacaacaaatctattcctaaatctattctttttgagactatgagtgaggccatgtattctatatggattatgaagcacaacattgatggtgggtctagtgttggcttcagcgcatatcaagtattcagaagttcccagtgtgatggtattgtgatcgttcaaaacttagatcgttctagcttattgtttcttcaacttaaatgaatatgcatgtcattgtcccagtgaagcttctgcgctgtgctggtgaaacacatctttgtacttcaagctgtgaatcgcgataacatttacaattttctcataggtcatgtttgttggatcatcttgtagtgtaggtattttctgaacttttcacggtcgacctgttaccactgcacaatatataggtttcagtccacttcaccacttgtttatagatgagtgaccagtctttgtacctatattattatcctctttgtacaacatttgctgccagatacaggcaactccttgatgtcttgaatcttggtcattgctcagagtagaaaggcattctagagttaagcgcacaatacgatcatggctactaagagcacagtagcatacatgttctttaagtgaccatcacattatttagtcgcttatattcctaggatgagaacactatgatgatatctgaatttgaagagggaagtcctggcttgacaggttacatttgctcttcaggagcctctactaaattctagattcaattatcagtgtcaccgtttatcttgtgcagtttaggaatatttctgcttttattagtcatttgcagtttacatgttgatctgagtctaattcacttattagcctgtttagtttaagtgttggcttcaaaaagaaatttcttagatttagtcagaatgaaatgctggtttagtgaccatatctgttgctagtttctacccacttaactttgttttaagggtttgctttctgttgcgtcagggttacatgtggacagttagttttttttccccatttgcacatttttatcttgcatgatgttctccatttcttctttagtacaagattggagtattcactaaaactgaaatatgcagtagaaacactgaaagaggtggtcatttttagcctgatgcattcctactggatgttgactatatttatgagctattgacagtttgcagatttacagaatacaatttgttctgttatgtatatatctttctcctacattttaaatcacctttgagaatctttagataaacttattgcaatttagtcctgttaattgaaatgtttcatttgtcatttaattgaggcagcaaaaaccccacctgatgtatcttacatttttcatgaatttcatttcagaactccacaagtatggtgggggacttgttgacatagacagcagggatgctgcagcaactcccgactccaagcaagctgtggtatctgcgaaagctccagcagagaccgctgctgcatccaccacagtgctccctcatgcagacgtgtaccatctaggcgtgcaggcgcagcgttctaccattgccggccaaaggtctgggcaggtacagaggcccattcagaaatggaagggccctgacaagatcagcaggatctatggtgactggatagacgaaaccgagtag</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0159800, RefSeq:Os08g0159800