Os08g0175600

From RiceWiki
Revision as of 12:49, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0175600| Description = Similar to PolI-like DNA polymerase| Version = NM_001067648.1 GI:115475032 GeneID:4344791| Length = 5816 bp| Defini...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0175600

Description

Similar to PolI-like DNA polymerase

Version

NM_001067648.1 GI:115475032 GeneID:4344791

Length

5816 bp

Definition

Oryza sativa Japonica Group Os08g0175600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:4410433..4416248

Sequence Coding Region

4410433..4411092,4413997..4414194,4414612..4415329,4415794..4415927

Expression

GEO Profiles:Os08g0175600

Genome Context

<gbrowseImage1> name=NC_008401:4410433..4416248 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:4410433..4416248 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggtggcgccgccgctgccgccggcaccggcgcggctgctccggcggtggcaggggtcgtcgccgtggctgtcctcttccttcggccgcacccgctacttttcgcgcccggccttcgccgcgggaggaaggcaagattattctcctagttctggcatgggggttagcaaaactggtgctttcaggctgggattgcatggcaacttaaatgtacaaagtagcgtgcaagaatgggttgatgaaaccaagaggttatttttcctcaggaccaccaacaatgtcaggaacaacatcactaatggcactactcctctgcgggttggaaatctgcgtcatgatccctcagaagatatcaggagttcaaactatccttccttgtataatcaaagagaaagagggccatctaattcaattgtaaatagacatgtcgatacagatttggctaagcatcgtgtgatgtatcagtcagcacatgctgtgcctgccccattcagtgttgctaataatgatatcaaaccactgaacctgcttgatggctccaaggaggaaattccttggcacgattccgttacggtggaatcttctctgcctaaagtttccaagtcagagacaactttggtggttgataaagctatcccaaacaaaaaggagcacaaacgcattacaaggaaagtgacgctaaatatcccggacaaagcttccttgtccactgagtcaaaaaatgcacggaagttgcttgctaccatctatgacaaagttttggttgtcgacaatgttgagtcagctaggagtgttgttaaattgcttactacaaagtacaaaggctttattcatgcatgtgacacggaggtggcaaatattgatgtcaaagaagagacgccagttggtcatggagaagtaatatgctttagcatctattcaggaaattctgatggggaggctgattttggaaatggcaaaacatgcatatgggtggatgtgctagatggtggaagggatgttctaatggagtttgctcctttctttgaggacccatctatcaaaaaggtttggcataactatagttttgatagccatgtcattgagaactgtggaatcaaggttgctggatttcatgctgatacaatgcatcttgcacgcctgtgggattcttccaggagagctgatggtggatattcacttgaaggactaacaaatgatcacagaatcatgaatgctgttctaaaggacatacataaaactgggaaggtgtcaatgaaaactatttttggtcggaaaaatgttagaaaaaatggatctgaagggaaaaccatatctatcgagccagtcaaaaagttacaaagggaggatagagagttgtggatttgctattcctcactagattcaatgagtacattgaagctttatgaaagcttgaaaaacaagcttgaagcaaaggaatggattttcgatggttgtcctagaggaacaatgtatgatttctacgaagagtattggcgtccctttggtgctcttcttgtaaagatggaaacagagggaatgtttgttgaccgtgcatacctttcggagattgagaaaactgctgttgttgaacgaaaattagcagcggataagtttcggaaatgggcatctaagcattgtcctgatgccaagtacatgaatgtgaatagtgataatcaaattcgccaacttttctttggtggcatc</cdnaseq>

Protein Sequence

<aaseq>MAVAPPLPPAPARLLRRWQGSSPWLSSSFGRTRYFSRPAFAAGG RQDYSPSSGMGVSKTGAFRLGLHGNLNVQSSVQEWVDETKRLFFLRTTNNVRNNITNG TTPLRVGNLRHDPSEDIRSSNYPSLYNQRERGPSNSIVNRHVDTDLAKHRVMYQSAHA VPAPFSVANNDIKPLNLLDGSKEEIPWHDSVTVESSLPKVSKSETTLVVDKAIPNKKE HKRITRKVTLNIPDKASLSTESKNARKLLATIYDKVLVVDNVESARSVVKLLTTKYKG FIHACDTEVANIDVKEETPVGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRD VLMEFAPFFEDPSIKKVWHNYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGG YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQRE DRELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLV KMETEGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLF FGGI</aaseq>

Gene Sequence

<dnaseqindica>5157..5816#2055..2252#920..1637#322..455#tttttggaagcctcgatgcccgtatctgctggagcgacgatttctcctcccatatgcgctatatttcggatggagtaccaaatagaggatctgctgggatgctcttaaaccctcgttccccttgtctcccaaaccctctctctccttcccctcgcttccgcctccggccgccgccgcgaggccatcgcctgctgctgcagcggcctaccctagcgtcggtgcaagacggcgccctgcggcttcggttgcggggtgggtggtggcgttgcgggaggaggagggaggcgggccgggtccaagctgaggcggctcgtgaggtccatggcggtggcgccgccgctgccgccggcaccggcgcggctgctccggcggtggcaggggtcgtcgccgtggctgtcctcttccttcggccgcacccgctacttttcgcgcccggccttcgccgcgggaggaaggtagccgtaatgtttatttgttaagatgtccctatcatggaggtgggagaaagctctgttccgtagtgcctaattcgtgatgaaaaataatagatgatgttttggttaatggatgggtgtatgcatctttttcgcgtgttctaatgtgatgatttatttagactgtgtaggacttcggatacgtctcctcatttgagctagtgttgatttgcattccttatatactttttttgttttgtattaagagatctaaagcattccttatatagtcacattccacttcttatagacatacgattattactacagaagtacgaattgcccgataatagtaatctgccaaagagtaactgggttctactgtcactatcctgaatgtcgcgcttttgccttactagttgatgatttcacattggttgggatcttgggtgctactgaacattgcaaatggttctcgttggcaggcaagattattctcctagttctggcatgggggttagcaaaactggtgctttcaggctgggattgcatggcaacttaaatgtacaaagtagcgtgcaagaatgggttgatgaaaccaagaggttatttttcctcaggaccaccaacaatgtcaggaacaacatcactaatggcactactcctctgcgggttggaaatctgcgtcatgatccctcagaagatatcaggagttcaaactatccttccttgtataatcaaagagaaagagggccatctaattcaattgtaaatagacatgtcgatacagatttggctaagcatcgtgtgatgtatcagtcagcacatgctgtgcctgccccattcagtgttgctaataatgatatcaaaccactgaacctgcttgatggctccaaggaggaaattccttggcacgattccgttacggtggaatcttctctgcctaaagtttccaagtcagagacaactttggtggttgataaagctatcccaaacaaaaaggagcacaaacgcattacaaggaaagtgacgctaaatatcccggacaaagcttccttgtccactgagtcaaaaaatgcacggaagttgcttgctaccatctatgacaaagttttggttgtcgacaatgttgagtcagctaggagtgttgttaaattgcttactacaaagtacaaaggctttattcatgcatgtgacacggaggtatttcaccaaaccctgcttgagttctatcatcggtatatcagttttggctatgttatttaggttttgcctcataattgtgagagtatcaataagaagtatatttctgataggtgatactatagtatcttgtttggtcatcaatattgctgacctcaagtgtttgttgttagattgtgccttttttcccctatgtatcttctctgaaaatgtaagttgcagagtttacaggagatgtcatgaagaatgtaaaatattaaatgctaatgctaattattggtttcttctagttacatggtttgacatgctcatagtctacttctgtggtagcaagctttgctcagaattatttacagttttattgcatatcaagctccaaacatacattctaatttaggatagtacaatattatgcaggtggcaaatattgatgtcaaagaagagacgccagttggtcatggagaagtaatatgctttagcatctattcaggaaattctgatggggaggctgattttggaaatggcaaaacatgcatatgggtggatgtgctagatggtggaagggatgttctaatggagtttgctcctttctttgaggacccatctatcaaaaaggttcacttcgattcctcattttataagttatttatcttggagtaaatttattgtggttatcttctccctttatgtgttggatgaaatatattagtgcaatagttcttttttcctcttctattactactgtaattacattactccttttagattaggccttagtttggcagcaaactgcactaaacacaatttcctatcactcgtaaacttatacttcaacactgaaaataactagatatagttcactattttatagttatgcatttcacctgattgtcagcaccatatagttgtggggttataacaaaaaaaaaaaagaaagaaaaattctacctggttacctgctaaaaccctatcctagagtgataatgtaaatggactaccttaagattgctgttttagacagacccttctgtgctctgacatactgtctttatatttttccttgactagaaaaaatgcccctgcgttccaatgagtgaaggcaacttgcaaataactgaacaaaattaactgtttatcctaggctgtagctacaggtccatcacctaatgaactatgaaatcatgtgggtatgatcgatgaatataattgtaacaaaaaaatggcatcatttctaacacgatgatggtgtttagttttgaagttatggagtgtatttctttcgtgcaatagcgcgtgtgcttgcgtcgactaacatgagtcaggtcataagaaatcttggtatggtagtctattgatttgtaggaagcttggaataaatcttagtcaatagtgaggacttggactaccactaagggaagagctgaaagacacatggtagattgacattggcatcgtttgattgacatcgtgtagaaggattgatgtgacatgtgactcattagtgttatgttgctcgaaattatggtagcagaattatggacttacaagaatgttgaccttgccgtcgaacaaagtacgtaccttgccggcaatctcctctttgtcggtgcgcaccaacacgttgcagacggagacgatgatagtgaggcttttgatcatccactcctcatggtatatactcagctccgcgtcaattggtgcaggcgtgcattgttgcgccgaagcccacgagctcctccacgatgaagcggctgcacgcgtggttgattctataatggacaatttggtagatagatgttatgtagcgtgttggtgaataaccacttaggggctgttcagattgatgccattttcaaccataccattttttgacaaagttgccaaaaaatgtctacgtttagtttgttgccaaatttgataaatacaaaagaaatcctgccaaaattttggcattgccaaaatttagtaaggtttattttggctacaatctgaacatgcccttagatttggatgactaacctgtgcttttgctgtcgccggtgacaagcacagtggcgccagtgagctagagcagagctagaacaaaatggagaaggttccagtctagggctgcagtgctaggtcactaggtttgttttgcttcttgtggacgtgtggtgttggtgttgtacttccgggtgggtgggtgtcggagtttatctctaacaccgtccaccttttttcctctatcgtaatgaaatgtacgcagatctcctgcgcgttctaaaaatattcttaacagaactgatgcagaaaagaacactgttttatctttttctcaaaagtgcacccatttggctatgaatcaactgaaattccattggatagtccttttgggtagatctgtgaggctagaaataaatgtaggtctatggaaagtcaaatctgcacacaggtgtaccaggtctgaaaatcatgaataaaatatttataaaaatggaaagggaagagatagagaaaaaaaaaatctatttttgaaaatcacaagggaacaacatttcacctcagccactgttcacgcgggaactgttccatcaccagagaggtgaagagcttcatggctagcttgggacagtagacccatctgatctaagtaggccatgaattcatgatcggtcaatgcagccagccgacccaggtagggtcagtggtaaaaagacctggccaatccagggtactgaaaaaggaggacatgcgctgtgtacagagtcaaagaccaatgtggtagcggagtagaggacggacgaaaattttgagtacagaatcatcttcaatttctataataggtaaagattgattagattcacatcttcgtaccccagagccccatatttcctactacttcgcttagaaaaaaaatgttgttttaggcattgacacagtccccgaaatacaactttgacaacttatttctgttatagtatatttgtatgaccctataaaattataatattatgatattctggtcacgaaaactattttctattgcaaaatgctaaaggaacccgatataattctaatattgtggaagtactttttgagaaaaatctacaagtacaattttcatgtatccaatctaaatctaaatagttaaaagatatcgatgccaacatttttaaagtttgacttcaaacatgtccaagacgagatgttttttgtgactggagggggtagtaagtttggtgacaaatatacacatatgagtttcatatatcaagattaaatattttgaaagatattgatggtcaaagttctgatagtttaacttaatgtatgtccaaagcggcgtgttttcatgactggagcccagagggagtatgaaattattatgctaattatttgtttcagccttcaagctgttatctttgaaatgcacgattcggaagaaaactacagattggtcattacccatcaattattattatatttgtttcttgctggcttgtccgaagtgatctgttctttctcctcatcatgtaggtttggcataactatagttttgatagccatgtcattgagaactgtggaatcaaggttgctggatttcatgctgatacaatgcatcttgcacgcctgtgggattcttccaggagagctgatggtggatattcacttgaaggactaacaaatgatcacagaatcatgaatgctgttctaaaggacatacataaaactgggaaggtgtcaatgaaaactatttttggtcggaaaaatgttagaaaaaatggatctgaagggaaaaccatatctatcgagccagtcaaaaagttacaaagggaggatagagagttgtggatttgctattcctcactagattcaatgagtacattgaagctttatgaaagcttgaaaaacaagcttgaagcaaaggaatggattttcgatggttgtcctagaggaacaatgtatgatttctacgaagagtattggcgtccctttggtgctcttcttgtaaagatggaaacagagggaatgtttgttgaccgtgcatacctttcggagattgagaaaactgctgttgttgaacgaaaattagcagcggataagtttcggaaatgggcatctaagcattgtcctgatgccaagtacatgaatgtgaatagtgataatcaaattcgccaacttttctttggtggcatc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0175600, RefSeq:Os08g0175600