Os08g0180000

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Revision as of 12:49, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0180000| Description = contains InterPro domain(s): IPR004971| Version = NM_001067671.1 GI:115475078 GeneID:4344818| Length = 4135 bp| Def...")
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Gene Name

Os08g0180000

Description

contains InterPro domain(s): IPR004971

Version

NM_001067671.1 GI:115475078 GeneID:4344818

Length

4135 bp

Definition

Oryza sativa Japonica Group Os08g0180000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:4675295..4679429

Sequence Coding Region

4675506..4675598,4675679..4675740,4675823..4675946,4676144..4676206,4676830..4676880
,4676974..4677038,4677144..4677282,4677679..4677735,4678076..4678174
,4678613..4678684,4678773..4678841,4678964..4679109,4679228..4679297

Expression

GEO Profiles:Os08g0180000

Genome Context

<gbrowseImage1> name=NC_008401:4675295..4679429 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:4675295..4679429 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaacaagcggccccgcgacgagccctcctcctccttcgcctccgcccccaagcgccagtacggcgcaggcggcggagggtatggggggcatgggtactcggaggagcggagcagcgcgcggcgggtggcggaccactacagcgcgaggtcgaaccagacgctcgaggagcgggagaacagccccatcatccacctcaagaagctcaacaactggattaagagtgttctgatccagctctacgcacaccccggagactgcgttcttgatctggcttgtggaaagggaggtgacttgataaagtgggacaaagccaaggttggatattatgtaggagttgatatcgccgaaggctcgataaaagattgcatgactcgctataatggtgacactgatcaacaacgaaggaagaagttcagttttcctgcacggcttatttgtgctgattgttacgaggctcgtttggatgagcatttatatgaggatgctccgtttgacatatgtagctgccagtttgcgttacattactcatggtcaactgaagcacgtgcaagacaagccctagctaatgtatctgctttgcttcgtcctggaggagttttcattgggacaatgcctgatgctaatgtcatcatcaaaaggcttagagaaactgatggcatggaatttgggaatggtgtttactggattagttttggcgaagagtatgctgaaaagaaattccccgcatccagacctttcggtatcaaatacaagtttcacttagaggatgctgttgattgcccggaatgggttgttccattccatctcttcaaattgctggcagaggagtatgacctggagttggttctgacgaaaaacttccatgaatttgtacacgagtacttgcaaaagccagagtttgctgagctcatgcggaggctgggtgccctaggtgatggaaggcaggaccaaagtacactgtcacaggatgaatgggaggtagcctatctctacctcgcatttgttttgcgcaagagaggccaacccccctcccagcggagggccaacaatgcaaacagaggaaagatgtttctcactgagaacgacatcgatttccttggggtataa</cdnaseq>

Protein Sequence

<aaseq>MNKRPRDEPSSSFASAPKRQYGAGGGGYGGHGYSEERSSARRVA DHYSARSNQTLEERENSPIIHLKKLNNWIKSVLIQLYAHPGDCVLDLACGKGGDLIKW DKAKVGYYVGVDIAEGSIKDCMTRYNGDTDQQRRKKFSFPARLICADCYEARLDEHLY EDAPFDICSCQFALHYSWSTEARARQALANVSALLRPGGVFIGTMPDANVIIKRLRET DGMEFGNGVYWISFGEEYAEKKFPASRPFGIKYKFHLEDAVDCPEWVVPFHLFKLLAE EYDLELVLTKNFHEFVHEYLQKPEFAELMRRLGALGDGRQDQSTLSQDEWEVAYLYLA FVLRKRGQPPSQRRANNANRGKMFLTENDIDFLGV</aaseq>

Gene Sequence

<dnaseqindica>3832..3924#3690..3751#3484..3607#3224..3286#2550..2600#2392..2456#2148..2286#1695..1751#1256..1354#746..817#589..657#321..466#133..202#atccctattcgagacagacgcagacgcagagccgaccgagcggcggccgagccgagccgaatcgaatcgaatcgaatcgaaaccctcctccttccaatccaggcggcggcggcggcggcgatcgccggcggcatgaacaagcggccccgcgacgagccctcctcctccttcgcctccgcccccaagcgccagtacggcgcaggtaactcactcctcctctccaccaaccctctcgtcaaatcaacccctcaatccagccaaaaccgatgctgcgggtggtagctaactacggttttggcgttttttttcttggggggtaggcggcggagggtatggggggcatgggtactcggaggagcggagcagcgcgcggcgggtggcggaccactacagcgcgaggtcgaaccagacgctcgaggagcgggagaacagccccatcatccacctcaagaagctcaacaactgggtatttccttcctatccgtccacccctaaattcctttgacgaattcagatgtttattgatgtttggtacaacttgctaagtggccgtccggagcttaacccttccaatctcgatgtgggcagattaagagtgttctgatccagctctacgcacaccccggagactgcgttcttgatctggcttgtggaaaggtgatcagcatgcggagaattggttggaaacataatgacttttttagtaaaagtagtgttaacctgtttcaactgttttgattctcagggaggtgacttgataaagtgggacaaagccaaggttggatattatgtaggagttgatatcgccgaaggctcggttagttttctatcaagggacatctgtactatatgcattcaacttattgtcataacatgatatggtgttcaatgaattatttgtctgcttatgattcttggcaatgcataccctgtatttgcttttctgcctaggtaggatggcaccatttggtgatttggtgtagttgtatatgtaacacatactgtatttttctcctagacacttaagactgtctgaagcttggaagtgtgtgtgcatatattcaatctatattccacttcatctttgtttgtatcatttcagtcctaagaatcttgaatactctcttttgctttttagtgaattatttctgttcttccaggtctcaagtaggcaataatagattgaatgctcttattgatgtatttgcattactttggagtttggaccacgaaaaaaatgacattacaatttcagataaaagattgcatgactcgctataatggtgacactgatcaacaacgaaggaagaagttcagttttcctgcacggcttatttgtgctgattgttacgaggtaaaacagaaattaaatgctgcaacacacctgatttgctataaccagatgtgatattatattgttattatgctttgtaagcacaaacatgctgataatgttattagcacagtgccttggattttttcccccaaagtacaagcgcactttgtggagttgtgtcaaatcatatgcaagctgtatgcattttcatagtcttgttaacatattcatacattttgctaatggcagttgttttgccctatgtttttgctccacgaagaacatgcttcacccttcacttctaaattctcttccattgttataatgatgtgactagttttttttatgtattccttaggctcgtttggatgagcatttatatgaggatgctccgtttgacatatgtagctgccaggtgagtgacctacctttatatttcctagctatgtgctcttatttgggtccattgtttttgttgttgtgtgtgtgactgattatttggtaatttctagtggaattttatatttctttgaattttctctaattacacatgttttcagtacattcactattgacagttagcaatagaatttttttttcatgagatgttgaaactgaaaggatcgttgattcattaaatgttcagacagagcaaataaaatgtaacaacggtggctttattctgtattaactgataaaacctaaaaatatctaaatattaaatgagagtgattatagtgagctatgtagttatctcctttgaattgcttcggcactttccaaaattttaagttctctttgtattttccagtttgcgttacattactcatggtcaactgaagcacgtgcaagacaagccctagctaatgtatctgctttgcttcgtcctggaggagttttcattgggacaatgcctgatgctaatgtcatcatcaaaaggcttagagaaagtaggtcactgttttcactggcgggcctatattttgattaattttggtctaactgtacttgcgataaagctacatgccttttttctcaaactttcctatcctcagctgatggcatggaatttgggaatggtgtttactggattagttttggcgaagagtatgctgaaaaggtaattgtgttcatatgttcataataaccactttctgttgggtcttgatactaactagcctgttttctatttttggttttcacaatggtgtagaaattccccgcatccagacctttcggtatcaaatacaagtttcacttagaggtaagggattactcataatttgtaatcatgttgctttagtgtgtgtttctatagggtgatttatcttagcacttgtttcttagttgctttaattgagtactgataaactaattgagtaattttactcaaccagtaactaagtaaaattagagaatttgtgatgcaaacaaaatttgatatgtttgcattctggtggttttgtatgctttgctttttctgatgcttgttctaaagtattgaaaatactcaattgatgtgcatccatttacactattttgatttttttttaacaaactataggttcttctaggtcacacagaacataatgtcgatattggcaatgattactgtttatttaccctagacattttctttggagtttagaagcaaatgcctctggtcattttactaacatatatgtgctacaacttgtttgggcgtcctggtccttcattttttatggtcttcgttgtcccacattttggcttcatacttgtgttgtattggaatgctagaatttttgtttccctccagactggacttccttctttgtgttctttcttgttggctgcattggctgttgggaaacttatgatgtataagacgtctatggcaatatgcaggatgctgttgattgcccggaatgggttgttccattccatctcttcaaattgctggcagaggaggtattctcttccttaaactattgcgagtaacactctgctgttttcccttattttgcagtaagttgattgtaaaatctatggaagttcattttatttctcatgtgtactactgcgtgtacacctttttatattttgtatgcgcatataaagttgcaatcagatgcatgtagttctgacacgttttgaatgtattgcagtatgacctggagttggttctgacgaaaaacttccatgaatttgtacacgagtacttgcaaaagccagagtttgctgagctcatgcggaggctgggtgccctaggtgatggaaggcaggaccaaagtaattttcactcggaaccaagtaaatttcctacctccaacataatccactctcgccaccactaacatcagaaactttgcaggtacactgtcacaggatgaatgggaggtagcctatctctacctcgcatttgttttgcgcaaggtacagtacaaaatttcacttctcattctgttaactagatggaaccacatcttctgcttctaaaaatgttgttattacagagaggccaacccccctcccagcggagggccaacaatgcaaacagaggaaagatgtttctcactgagaacgacatcgatttccttggggtataaagcaaacagaactgtactctagagcttactaacaacttaccgattcaatgcttcatacagcataaaaagaagaaagttgtacctttagtagctcaccagttattcctcgaagctgtacctgttgtatactaaatgtataaaccctataaggactcttgatgcaattttgcagaaatgaatgaaatgaataataggtcccgtaataattctt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0180000, RefSeq:Os08g0180000