Os08g0192400

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Revision as of 12:50, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0192400| Description = YL1 nuclear family protein| Version = NM_001067711.1 GI:115475158 GeneID:4344862| Length = 3159 bp| Definition = Or...")
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Gene Name

Os08g0192400

Description

YL1 nuclear family protein

Version

NM_001067711.1 GI:115475158 GeneID:4344862

Length

3159 bp

Definition

Oryza sativa Japonica Group Os08g0192400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:5400188..5403346

Sequence Coding Region

5400188..5400383,5400526..5400591,5401074..5401116,5401466..5401585,5402000..5402078
,5402257..5402524,5402609..5402652,5402778..5402849,5403103..5403172
,5403276..5403346

Expression

GEO Profiles:Os08g0192400

Genome Context

<gbrowseImage1> name=NC_008401:5400188..5403346 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:5400188..5403346 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgacctcgccgacgaggatccgcccgtcctcctcgaccgcgcctctcgtgccacccgtgggaagaggataaccaagctcctcgaagatgaggttgagcaggacgaggtcttctggaatcaggacgccctcaaggaggatgaagaagatgacaactacgaggaagagcaggatgctggtgatgaattcgacagtgattttggtgaagatgagtcggaacctgatgatgaaccggaaaaggaagtacgtgagagattacctatcaaaaagcgactcatattccctgggaagactatgaaaaaaatcaatgccaagaagaagaagaaggtggtcccaaagctggaagatgattccaaaactgacaagtattcagatcagcaaagtccatctaagcaaacagacattcctgatgaactggagaccggtgaaaagaccatcaggaaatcaactagaacatctgtcatcgtcagacaagctgagagggaggcaatacgtgctgagaaagaagcaacgatgaaggttcctgttattaagaagaaaaaggagggagaagaaaagcgtatgacacaagaagagatgctgttggaagcagctgaaacagagatcatcaacctgagaaatcttgaacgtgtattggcaagagaggaggaggttaagaaaaaagccgttgttcataaagctgtttatgagggtcctacgattcggttttgctcaagagatgatccagagaaatctatttgtgctgtaactggacttcctgccaaataccgtgacccaaagacggggttgccatatgcaacaaaggaagcatttaaaatcatccgagaaagtttcctgaaagaggaggctgacaggaagaggcccaacttggcgaatatgggagagctctttgaatcaataacaggagaatactccacacccaagaagagaagaattgaggcaagatcacccagcatctcatcagaccaaaggcatggaggacgctttcgacgaatacctgctcttgatttgctggacgaggactga</cdnaseq>

Protein Sequence

<aaseq>MADLADEDPPVLLDRASRATRGKRITKLLEDEVEQDEVFWNQDA LKEDEEDDNYEEEQDAGDEFDSDFGEDESEPDDEPEKEVRERLPIKKRLIFPGKTMKK INAKKKKKVVPKLEDDSKTDKYSDQQSPSKQTDIPDELETGEKTIRKSTRTSVIVRQA EREAIRAEKEATMKVPVIKKKKEGEEKRMTQEEMLLEAAETEIINLRNLERVLAREEE VKKKAVVHKAVYEGPTIRFCSRDDPEKSICAVTGLPAKYRDPKTGLPYATKEAFKIIR ESFLKEEADRKRPNLANMGELFESITGEYSTPKKRRIEARSPSISSDQRHGGRFRRIP ALDLLDED</aaseq>

Gene Sequence

<dnaseqindica>2964..3159#2756..2821#2231..2273#1762..1881#1269..1347#823..1090#695..738#498..569#175..244#1..71#atggccgacctcgccgacgaggatccgcccgtcctcctcgaccgcgcctctcgtgccacccgtgggaagaggtgcgcgcttccctccccctcatcctctatggctcgctctatccctttggctgcaatacctagttcgcccgccgctcaattcaattctgtcatcgtttcctaggataaccaagctcctcgaagatgaggttgagcaggacgaggtcttctggaatcaggacgccctcaaggaggttctcttctcactctcttccttcccgcattctgctgcttttcttcttatcatttcttgatttcttttagcgggtcttggatcttgttttagtgtgctcgggacagataattagaatagcttccgttgttgttgagttcgccatttagttaattaattgtgcgacttgcgtcaatgctgttggttgctgcaattgcttggttaagcaggatgacaaatactattcttcattgtttgctcatatttattaccaggatgaagaagatgacaactacgaggaagagcaggatgctggtgatgaattcgacagtgattttggtgaagatgtgagtgagatccctcttcatgctgctcctaatcattttagctttcaccggtgtgctgctcttctgcttctacttactaagcactgcacatagttgtttgatgtaactcctttggattcatccaggagtcggaacctgatgatgaaccggaaaaggaagtacgtgagaggtaggtacatgtgtttgttgagagcaagtcacaatatggtgtatattagttctacactcatgtcacaactcaatcatgaagcagattacctatcaaaaagcgactcatattccctgggaagactatgaaaaaaatcaatgccaagaagaagaagaaggtggtcccaaagctggaagatgattccaaaactgacaagtattcagatcagcaaagtccatctaagcaaacagacattcctgatgaactggagaccggtgaaaagaccatcaggaaatcaactagaacatctgtcatcgtcagacaagctgagagggaggcaatacgtgctgagaaagaagcaacgatgaaggttgtatgcccacattgagtccttagcttctttgtatcaaattttgttgttagtgcattgtggctgcccatgggccaggcaaaagaatattgtgttactcatatattagtttttcaatccatggcatttttccattttgagggtttaatttgctcacttttcatcttgtaaatggcttcagcctgttattaagaagaaaaaggagggagaagaaaagcgtatgacacaagaagagatgctgttggaagcagctgaaacaggtatgttttttgtttttataaaccttttccagttttcacaagaagagatgatgcaggccttgaatgaaatgcgatcgcctagtttgctacctgacgatttgggagtatgagtttgtcttgttgagagagtgctgtcttttaggtctggttttgttgaatttgggtgggtcctttttctggctatcgtgatgtatggacctgcttcctgttagctggaattccgagcagttctgtctttagtttgttagtttgctgtttgtcaaaaaagactttgtaaaagactatgtttcttttggcttttcttccaaaagctgtgtagtaatttgcctgatctctaaaagttgcagacctgtaacgagccagctttaattgttgccattaatacgttggggcattttttgtatatttttccagagatcatcaacctgagaaatcttgaacgtgtattggcaagagaggaggaggttaagaaaaaagccgttgttcataaagctgtttatgagggtcctacgattcggttttgctcaagagatggtaacttctctattaaaatatcatcaagcatctgtttgcatctggaatgtggaattactagcttcttttttctacattatgaattatgataaccaataccttaggtgttctcaatagcttattatcagttctgtgctgaattaggggagtcacgcttggaattcatcaacggggcatcatttgggtcagaactttgtacaacctcagctccttgtaagtgcaaactttcatttggttattctttgttatttgcctctgccagtaatcactaaatgtgagcatccgtgacagattgagctcatactacttatatgccctcctcttctcatgataatattcttcattacagatccagagaaatctatttgtgctgtaactggacttcctgccaagtatgttctctgagcgcacatttgaagtgacctatattggcctttgatgttccttttctgaagccgaaactgttgctgtgtttattgcattgatctaaataaaattgtgcacacgtgcaccttttgtttaacatctccacattattagcagagtgtttatccttagacattgcattgcttgaaatgctgtttgccacatccttgttattgtttgccatctagttctggtgaaatagctacattattttgacttggcaatttgaaatgatcccacagaagccgatttgttattattttctagccactgtaagaccacctgtaggatgtgcattgtgttaatatggtcctgctgaagagatttggaacgtagttttatttctttttcaaagtagtacatttgaattctgatctgattgtactgttatttttggatgatttattttacgagcagataagcttattttaggtttacaatcttgcagataccgtgacccaaagacggggttgccatatgcaacaaaggaagcatttaaaatcatccgagaaaggtactctttctagctttgttgttattagaatcatatgttttttttggcgactaactgcttgaatgacttgaaattttcttatgtaaaatgcacttaatatgtgaacatcctaacatattgtccatcgatgcttggcaatcagtttcctgaaagaggaggctgacaggaagaggcccaacttggcgaatatgggagagctctttgaatcaataacaggagaatactccacacccaagaagagaagaattgaggcaagatcacccagcatctcatcagaccaaaggcatggaggacgctttcgacgaatacctgctcttgatttgctggacgaggactga</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0192400, RefSeq:Os08g0192400