Os08g0196700

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Revision as of 12:50, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0196700| Description = Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA| Version = NM_001067722.1 GI:115475180 GeneID:4344874| ...")
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Gene Name

Os08g0196700

Description

Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA

Version

NM_001067722.1 GI:115475180 GeneID:4344874

Length

3444 bp

Definition

Oryza sativa Japonica Group Os08g0196700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:5596609..5600052

Sequence Coding Region

5597733..5597840,5598083..5598154,5598229..5598393,5599565..5599801

Expression

GEO Profiles:Os08g0196700

Genome Context

<gbrowseImage1> name=NC_008401:5596609..5600052 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:5596609..5600052 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagccagatggtgaaactcagcttcgtcctacagctgctggacatccagatcctggtttgggcacatcatctgcagaatacgtggcctctctaggaccagctacagctccagtatcttatccatatatcagtacctattatggaggcacttatggtgcttatagtggacaacctctggttaacgctgctttaatggcaatgcctccgcattctgtgcccttggtgaccgatgctgttgtagagcccatatatgtcaatgcaaggcagtatcatggtatattaaggcggcgccaatctcgtgcaaaagctgaatcagaaaataaggccaacaaaatccgcaagccttacctacatgagtcccgccatctgcatgctttgaaaagggcaagggggtccggtggtcgatttctcaactctaaggctgtggaggggaagcaagacactaaatctgtagataaaaaggatggagctgtgccatctgaggagaagagagacaagaagttggcaaatagcattatcaaattggagaactcgagcccaacaacacaaccaggtgcagatgcgtccgatgttgtatga</cdnaseq>

Protein Sequence

<aaseq>MKPDGETQLRPTAAGHPDPGLGTSSAEYVASLGPATAPVSYPYI STYYGGTYGAYSGQPLVNAALMAMPPHSVPLVTDAVVEPIYVNARQYHGILRRRQSRA KAESENKANKIRKPYLHESRHLHALKRARGSGGRFLNSKAVEGKQDTKSVDKKDGAVP SEEKRDKKLANSIIKLENSSPTTQPGADASDVV</aaseq>

Gene Sequence

<dnaseqindica>1125..1232#1475..1546#1621..1785#2957..3193#atcttcgagagattcctcccaatcccgagcagaatcccccgccccggcgaatccgcgcggcgctcgaggtaatccaatccctcctcttcctccgccctccccctccctcgccgcgtcggctcgccggacggacggtgggttctccatggtgtcggctttctttgtgggctctgccgatttccgcgttcctgaggccgcgtagaatctgcataggagttgtttgggtagatttagttggcggaatcccccgcggtgtgtggaatggaggtggattagcttggctcggttcggtcccatgcgtggatatgctgggccgcctttggagcatttctttgtggtgtggctacccagctgtataataaacatggcgagtaggattacttcctgtgtagtcaatttagccattccatttagggatttctgattctgttgcaggtgtccgtggcactggtggtaccttgatagagactagagtgaatgcctttttctttgttctgtttcattgtttgctgcatcctgatgcaaattagctcggcctgtaaactgtaaaggttgcttgtttgtgtcgtcgagatgggatttagtgcgccgcggcagtttgatgatgaattagggccttagcaggttctttggttaggagaatgttaatccagggtgaagagcgaagaagaacaagtagctcattaagctgcaattcatggtattcatgaaaagttgaaacgatatgtatttcgtttgtaattcatttccacagcttttctgttaaaaaagacattgaggtgtgtttgttattcaagtagtggaaccacgtatggagttttctggaatgggaaaaaatcctaatggagcaatactgtgtggaggtcgagtctttaccgatacttgtcacaaaataatttagttattagctctcttttatgaaaggtagaagaatggttgtgaataactgggaatggttgaggaggatctgtttgtctattgtgtacttttgtgcactttggggctgactatagttttgtttgtagctttgcacaagatattagatgtgatgcctttgtcacttgctgaaatactgaattattttccctttgctgacagtgaatttgactagctagtagccacgcatgaagccagatggtgaaactcagcttcgtcctacagctgctggacatccagatcctggtttgggcacatcatctgcagaatacgtggcctctctaggaccagctacagtatgatctgttctctttcttgtctttagaaacatgacagtacaggtagtgcaacgactacctaggatccttttctgctcgaagttctgatggtaaaatttgactacaatttgatcaagaaataaaagatacattattatatgactaatttcttaccagttacatcgatacttagttcttttaccaaccttctcttatactgctcaggttcagccctaataaataaattatttctttttcaggctccagtatcttatccatatatcagtacctattatggaggcacttatggtgcttatagtggacaacctctggtaatttacgttaccgatatagtcagatatcagatttactatagcagctgatttttgttatctactttctttaggttaacgctgctttaatggcaatgcctccgcattctgtgcccttggtgaccgatgctgttgtagagcccatatatgtcaatgcaaggcagtatcatggtatattaaggcggcgccaatctcgtgcaaaagctgaatcagaaaataaggccaacaaaatccgcaaggtatttcctaaatattatacttgcttgagccatattttcaagctatttatcagacagggtgaaactgctttgccacctcttcaagattgttgttgaagattgacccatgccatcaaaacaggccttatcaaaatttcaagaaatttatgggaaaatgaaaattaatctgtttgctccaagttcagcatggttgtgacaacttattgggtttttacagtttcccttttgtttgtgaattgttcttttttttctgattgatacatccattgatctcatagatgaatatatgtgttcatatgtgtttggaatttcatttcttgctttcctcctttttcactgttgcagttatggatttgcaacgccttaggccccgttcgatctcccgtgttggagatggattttgttgcacgcaaaacgagaaacctaattagcacatgattaattaagtattaactattataaatttgaaaattggatttttttttcaaacaacttttatataaaaactaaaaaaaagtaccagttaacagtttgaaaaatgtgctaacggaaaacgaggaagttgaagtttgaagttgaagaatagaacagggccttagtctagaatcccacatatcagtcaattaaggggaaaattcctcactttggcatccttaatttgatcttctatagttattttgactgcaaaacttagattgtaccagattttagcaaggtttaaggggggcaatatatctaccctgttatttccatcttcctgagaatatctttcatctctattcaagtttctatcaaaactgactgtgctaactaatttaaacagaacaccattaaatgatattgtgagtttgtgacaatcttaatttagacgatatggctaatccaatagctttgtcgtaagtcacttttttcctttatattgataactacagaccgatagaagcaatttatggttaatttttttactaaggtgctcaagtaatgttctcctcactaaatttaatatagtttcacacttgaacacgtagaggaccaagcaaaaaaaaggatatgctccttgttctaaatgctttatcatgtttaatgggcactagtttctgttcatattgaaactcagttgtgttctttgtttctcatttctttggtaccatttggtttgttccttcttcagccttacctacatgagtcccgccatctgcatgctttgaaaagggcaagggggtccggtggtcgatttctcaactctaaggctgtggaggggaagcaagacactaaatctgtagataaaaaggatggagctgtgccatctgaggagaagagagacaagaagttggcaaatagcattatcaaattggagaactcgagcccaacaacacaaccaggtgcagatgcgtccgatgttgtatgatgcaaatttagccaatccctccctaatccaaccaaattgccagaatcgatcgaattgtgtgcttgctttctgttcgtgacagtttaagtctgtacatagctgttagttttgatgattggataaatccatgatagtatagtgaacatgttgtgggagcagttcagtgctagggtttgttgctgagtgtagattatgaaccttgtgtcactgttgtgttttgcttctgttaatgaatggtagcttacaatggg</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0196700, RefSeq:Os08g0196700