Os08g0248800

From RiceWiki
Revision as of 12:53, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0248800| Description = Similar to Aspartate carbamoyltransferase 3, chloroplast precursor (EC 2.1.3.2) (Aspartate transcarbamylase 3) (ATCase...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0248800

Description

Similar to Aspartate carbamoyltransferase 3, chloroplast precursor (EC 2.1.3.2) (Aspartate transcarbamylase 3) (ATCase 3)

Version

NM_001067902.2 GI:297608258 GeneID:4345071

Length

4182 bp

Definition

Oryza sativa Japonica Group Os08g0248800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:9070644..9074825

Sequence Coding Region

9070920..9071027,9071677..9071913,9072018..9072191,9072874..9073013,9074393..9074825

Expression

GEO Profiles:Os08g0248800

Genome Context

<gbrowseImage1> name=NC_008401:9070644..9074825 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:9070644..9074825 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggccgcccgcgccaccctcccgctcccgcgtgtccccgccccctcgccgaggccccagctcaggcccttcccctccctccccgctcgccgcggcgcggtggcatgcggcgccggctcggcggcggcgggggtcgcggcgtcgctgcggctcggggacgtgatcgaggcgcagcagttcgaccgggacgcgctgacggagatcttcgaggtggcgcgggagatggaggccctggagcgcgggtcctcctcccgcggcgccgggaggagccgcgtcctcgaggggtacctcatggccacgctcttctatgagccgtccacgcgcacgcgcctctccttcgaggccgccatgcggcggctcggcggggaggtgctcaccaccgagaacgcccgcgagttctcctccgccgccaagggcgagaccctggaagataccataaggactgttgagggttattctgatattattgttctgagacattttgaaagtggggctgcaaggagagcagccgccactgcagacattccagttattaatgcaggcgatgggccagggcaacatccaactcaggctttattggatgtctattcaatagagagagaaattggcacactagatggaataaaacttggtttggttggagaccttgctaatggaagaactgttcgttctctagcctatttgattgccaaataccaaaacattaagatatactttgtatctccagatgttgtaaaaatgaaggatgacatcaaggaatacttaacttctcaaggtgttgagtgggaagaaagttcagatttgttggaggtggcatcaaaatgcgatgttatttatcaaacacgcattcaaaaagaaagattcggtgagaggatagatctttatgaagcagctcgtggtaagtacattgtggacaagaaggtcttagatgtgctgccaaaacatgctgttatcatgcatccccttccaaggcttgatgagatcacaatagatgttgacagtgatccgagagctgcatattttagacaggccaaaaacggcctctacatcagaatggcgttgctcaaacttctgcttgttggtcgctga</cdnaseq>

Protein Sequence

<aaseq>MAAARATLPLPRVPAPSPRPQLRPFPSLPARRGAVACGAGSAAA GVAASLRLGDVIEAQQFDRDALTEIFEVAREMEALERGSSSRGAGRSRVLEGYLMATL FYEPSTRTRLSFEAAMRRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVLR HFESGAARRAAATADIPVINAGDGPGQHPTQALLDVYSIEREIGTLDGIKLGLVGDLA NGRTVRSLAYLIAKYQNIKIYFVSPDVVKMKDDIKEYLTSQGVEWEESSDLLEVASKC DVIYQTRIQKERFGERIDLYEAARGKYIVDKKVLDVLPKHAVIMHPLPRLDEITIDVD SDPRAAYFRQAKNGLYIRMALLKLLLVGR</aaseq>

Gene Sequence

<dnaseqindica>3799..3906#2913..3149#2635..2808#1813..1952#1..433#atggcggccgcccgcgccaccctcccgctcccgcgtgtccccgccccctcgccgaggccccagctcaggcccttcccctccctccccgctcgccgcggcgcggtggcatgcggcgccggctcggcggcggcgggggtcgcggcgtcgctgcggctcggggacgtgatcgaggcgcagcagttcgaccgggacgcgctgacggagatcttcgaggtggcgcgggagatggaggccctggagcgcgggtcctcctcccgcggcgccgggaggagccgcgtcctcgaggggtacctcatggccacgctcttctatgagccgtccacgcgcacgcgcctctccttcgaggccgccatgcggcggctcggcggggaggtgctcaccaccgagaacgcccgcgagttctcctccgccgccaagggcgagaccctggaaggtgagttcctgggttcagtgcgttgagtgatgtagtgactgaacctttggttggagcggcaaatttcgaagtattgggatgaaattggagtggttttgtgagttgtcgatagtgaacaggtgaggaaatgctcattctgtgccttctgggtacatgttggttttgcattgtcggaattggtagatcttgatttgtctctcgttgtgcaaatggccgcgaaacggagttgaaaattatgggagagtttgaaatggttttggatcaactgtggtatggagtgatgtggattagtcaagtttatttggagcggagtgggatgacatggagtgtcaactagaaatttggtattgtttggaacagttttagtcttgtcgtattataggatgtcatggaaacaaatgctaggaataactagttgtacagtgaactctttggatagtttcggcgtgctcgatgacatttcagttggatatttttgcttgaatctgcgagatagaaaatttcaagggtagttcttgactttcattgtggagcgaacatgagttttctgtcatttgcgctaagggcatcaaagaatggtgagatatctaggataggttgattcatgggatgttggtgttcatcacatttttttttgttttagaatcacggtggtatcttcaatgccttggagttgtgatgtcgaatgccaaaagaaattatcttgaaatgtgttgttgggattaatgatactagttcaagtaccagggcgctggtattgctgccagttggctactatgtttgtatagttgcatcagtagttattccttcgaggaagatagggaggatctaaggacatcagtttgcatcatttgtggtaaaccacgaatagtacaaatataaaaggtttacccataaattatttttgttgtcctaaatgttttgattgtgatgttgggtggcatacttgcatttaggacctatatattcaattaatatgttatattagtattgtgtgggaatataaattcccggaataatctcactatttaatctggatctgacagttgactggtgcttacctcacaaaacagatctaaaactaacattttcaagtaaaaataaatccctctgaatcaaaatatataagtttcttttagccttctcaacatttttaaaatgttactgtagaattacaaggaacttttgtttctttttctttgtatgtttcccttgctaaatgaatgtactcgtgaacaaatattcattctctcctatgtgggtataaatgaaggaccgcaaatcatttgtctattttgtttatttttatgcatgtctgatatgacttattttttggaccagaggatgtaggttgttaaccatgtgtatccatgctgcagataccataaggactgttgagggttattctgatattattgttctgagacattttgaaagtggggctgcaaggagagcagccgccactgcagacattccagttattaatgcaggcgatgggccagggcaacatccaactcaggtaattgttctgcccctgactccttttgaactctcttgtttttaccaataaacagtgtcatcatgcttggattcctggaaaaggacagttttaggcaggtgattgctgttttcttaaggagctaaaaatgcattttaacgaatgatgttctgaccagactctggatggatcattcaatagaaattgcagttttgttgccaatgtacggtgttgatcagaatcacatattaccggctgataaaatagactgtatagtgatgtggatgcagatttcattttattattaagctttctctggagcatttatagttaattcatgacactgaatactccatagtaacaacacctgtaaaattatcagtgctcctcttggggatatacaacatttttgttgtattgctagtgaataggatgaaatgaatgggtgtcagtgaatcagtgtttctagctagtctggtattcctttaggcaagtaagaatgttgcagctttataaacacattttcagcttaatacttgtggcagctttataggtttgtccactgtatctctttatctctgccatcatgttgataactaaaatcagtttggaatctagtttctgttcttacatcctgaatcctgatgcagtatgatttatgtactattttatttgtaattgataattttgttcttttgttcaggctttattggatgtctattcaatagagagagaaattggcacactagatggaataaaacttggtttggttggagaccttgctaatggaagaactgttcgttctctagcctatttgattgccaaataccaaaacattaagatatactttgtatctccagatgttgtaaaaatgaaggtattactcgtcctatcaaatgttaactgcattccgctcttttgatgtctgttatggcccagatagaacagattggatgatgatttttttcttctgtcccataggatgacatcaaggaatacttaacttctcaaggtgttgagtgggaagaaagttcagatttgttggaggtggcatcaaaatgcgatgttatttatcaaacacgcattcaaaaagaaagattcggtgagaggatagatctttatgaagcagctcgtggtaagtacattgtggacaagaaggtcttagatgtgctgccaaaacatgctgttatcatgcatccccttccaaggcttgatgaggttagcaattatccttttaaataaaatcatctaacagtattcatttatcagtgttttacattcaatagtgtcccagatgagatattattggttatatttagcattagtaaaattgttttatattgccaaaaaaaggcaggatatagtttctgttacatttgcatatcataatatccaatatgagctttcaagtttcaaagccttaatagtaaatatgtctgtgaatggatgcaccaaagtgatatgtttttactagttacttagtagttgctgtgtcccaaatgatatggcttggtgcaggcagatgctgagcaccgcttttcatttagtatgtaagcgtgctgtttcagtcagctatgtgaaaagtcaattgtgaacttgggaaatgggaactccttaccaaaagtgtgtctagaataggtgagagttaacccaagtcaactgtcagctatgagaaaagtcatcaatgaaataacagaggatgtatttatctagaatagatgagaattgcccagggcatagcttgatgccttgatgaaacaattgttgtcatttacacatctgggaactagcactagcagtcagcatgctttcctaggccttatggcggcccaagatctaatcacattcaaaattttctgttttgcagatcacaatagatgttgacagtgatccgagagctgcatattttagacaggccaaaaacggcctctacatcagaatggcgttgctcaaacttctgcttgttggtcgctgacagctttcttagtgcgtggcgctgtggtgttgatgggggtcaaaaaatgtttgtcttaatcaatggctccaaatcaactgattagtattgtactaggcaccataagttagatccttgcaaggatttaaccatgtctagaactctagatgcataattttcgatgtaacaaaatattctgaaacagagatttgttgctctcatatgttcttgtgaatcattatcaccgaggactgcactaattttcctacagtgttgttgcaaggactgcagtgattt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0248800, RefSeq:Os08g0248800