Os08g0277900

From RiceWiki
Revision as of 12:54, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0277900| Description = Similar to Syntaxin 52 (AtSYP52)| Version = NM_001067971.1 GI:115475679 GeneID:4345157| Length = 3843 bp| Definitio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0277900

Description

Similar to Syntaxin 52 (AtSYP52)

Version

NM_001067971.1 GI:115475679 GeneID:4345157

Length

3843 bp

Definition

Oryza sativa Japonica Group Os08g0277900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:10758598..10762440

Sequence Coding Region

10760016..10760230,10761107..10761208,10761377..10761480,10761730..10761830,10761910..10761954
,10762071..10762202

Expression

GEO Profiles:Os08g0277900

Genome Context

<gbrowseImage1> name=NC_008401:10758598..10762440 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:10758598..10762440 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcttcatcttcggacccatggatgaaagagtacaatgaggcatctaggcttgctgatgatatcaattccatgattgccgatagagggtctcttccacaatcaggcccggaaattatacgtcacacatcagccattcgaagaaaaataactattctttgtactagactggatagcttggaagcattgttgtccaagattcctccgaagtcactcagtgacaaggagttacacaagcgccaagacacgctttccaatttgaaatctaaaacaaaacagatggcaacaagttttaacatgtcaaactttgccaacagggaggacttgcttggtcagaacaagaaggcagctgatgatatgagcagagttgctggtttggataaccaagggattgttggccttcagaggcaaattatgaaagaacaagatgaaggtcttgagaagctggaagagacagtcctgagtacaaaacatatcgctttagcagtcaatgaagaacttaccctgcatacgagattgattgatgacttggaagatcatgttgatgttacaaactcgcgtcttcagcgtgtgcaaaagaggcttgcaattctgaacaagcgcaccaaaggtggctgctcatgcatgtgcctgctgctatctgtcgtcgcaatagtgatccttgctgttatcgtgtggcttcttatcaagtatatgtaa</cdnaseq>

Protein Sequence

<aaseq>MASSSDPWMKEYNEASRLADDINSMIADRGSLPQSGPEIIRHTS AIRRKITILCTRLDSLEALLSKIPPKSLSDKELHKRQDTLSNLKSKTKQMATSFNMSN FANREDLLGQNKKAADDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEETVLSTKHIA LAVNEELTLHTRLIDDLEDHVDVTNSRLQRVQKRLAILNKRTKGGCSCMCLLLSVVAI VILAVIVWLLIKYM</aaseq>

Gene Sequence

<dnaseqindica>1419..1633#2510..2611#2780..2883#3133..3233#3313..3357#3474..3605#ttcctgaatcttcctaccgtgcgtgagccgtccccagtaccagtactcaccacctacgcggtcgcccaccgcgccgtcgccggcgccggtcagcccctcaccgccgcctcccgttcgccaacgacgtcgtcgccgtcggccctatcccccgtcaggtacgcccacgcaacgccgcccccccgtcttgtatactatttctcgattttgtttttcttttttaattttattttagcgagctctatcctcgcccacagctccgtcaaaggcacggagaaacgaacaaacgcgagagagaaaacaagaagaggaggaggagccgacgcaaccgaggccccagttccgattgatctccggttcccagatcggccaggtttgtcctccccccaattcgcccccctgaatccttctccccccgcccggtttcgtcctgatcggtgcccgtttcgtgctgttccgtgcgcggattagggttcttgctaggatctttgggggtgggctggcgacctggtgttgggtgcttgatgggtttgttcgttcgtgcgtgtgatccgccgtgggaggaaagaggaagagattgttctcctgaagaaaccttaccatttccgttggtgttttgatgaatggatatgttaggattggtttctttctgttattccctgcaagtttcgtcaagctcagctttgcgattagttactatgagcttattacaattttttacctttctacaagttattcattaccgatttttgtacctaataatgtggttcaatttgggatttggaagtatgcctgcgattttgtctggtattaacaatttagctctcaacaagcaaaagcaaccttttgaggctagttgcaggctgcagcagaagcagagtgaattaagggcattcaagtgtaaagaacagagggtatacttaaaatcattcttatatttttaacaactattatgtctcatgtggtactataaatgggaacttaaatgagattagttgttaataaaaatttctgtaggaaatatctttgcattttagcctgtttttccttatgtccactattaaggttggaataggttaaacagtgtacaggtgcaaatcagaacctgaaatgctgatagttaccttccccgtacatttgactttatgaccggacggtgcatttctttgctccgaaatgctgatggttgtcttcctcgtacttcgttaatacattccaccattaacatgcattcctcataccttagtagcaacagttttgtgtttatgtgaaaatatcaaagagacataatacactagtttcctgtcatgatatctcatggttattttttacacgtatccatcctattagagatttttatattatatcatccttttgtgtgcctacttgatgtttatgccattgttttgaattaaccagcaatggcttcatcttcggacccatggatgaaagagtacaatgaggcatctaggcttgctgatgatatcaattccatgattgccgatagagggtctcttccacaatcaggcccggaaattatacgtcacacatcagccattcgaagaaaaataactattctttgtactagactggatagcttggaagcattgttgtccaagattcctccgaagtcactgtatgttctgttgctactacctttttctttatataaaactgaagataggtggagttttttcaattctggcatatttccttatgctaaagcctaaatttattccgaaagcctatatactggcaaattttgtacaaactgttagctaacctgtttacttaatgtgacgtatcttaaaattgaatttatcagctattctttaaaatggaggataatgatgtttttgctcgtttataactgatgtgtggacttctgacgcctctgcttcaccacctatggggacccagactagatttaaaatgaaatacttcctctgtacaaaaatatatgaactacaaaggtaactatattttgggatggagggagtattgtaattgtatgatcaggttttgtgttattttttcaatgaccttagttggtgtagaaccataagagcttgtgttggttgtggagcatgaaaccaactatgctagagatgttataagatgcaattatttggcatatgttagaatttaagggctgtgcatgtagttcctgtttgaaaaatatccattgccattatggtaggaagattgcaccttatctcttacgtcagttgtaaggacatgttttgcctgcttatgagaaagatatggtgaacgccacttagcaagttaattaatgtggtttgcagtatagatatgctgatagaaaatggtttgtcattaactagttaggattttttttttatcgaagttatattttactaatgcaggaacctgcacattttaacactgacacatagttttatatttatatggcatggcagtatggtgtaatggttattggaatttatacctgccaaaagttctcaattcctttacttttgaattcatgcagcagtgacaaggagttacacaagcgccaagacacgctttccaatttgaaatctaaaacaaaacagatggcaacaagttttaacatgtcaaactttgccaacaggtgtgttcttcgtatcagtaatgatcttagtatggaataatgctgtaccaatgctttggagaagtatcaatcctttatgtcatccaaatatggtcatgtaattattgttgggaacttttatttctaatgatcatagtatcataccaaatttgtacttatccaatatagggaggacttgcttggtcagaacaagaaggcagctgatgatatgagcagagttgctggtttggataaccaagggattgttggccttcagaggcaaattatgaaaggtgacaaatatgtcacttaattattccattttttgtttccctatagcaggatcttttgaataatggcattgaaatttcggtaaaagaaaatgatggaattgaaataaaacatgaaaaaaaaaggtgcacgagacccctgtttctttacagtacatgcattttgtaattgtaggcacatatcattttatttccacaaaccacagcaatttgcatggtgactaactgtttggcatattttacaatttgcagaacaagatgaaggtcttgagaagctggaagagacagtcctgagtacaaaacatatcgctttagcagtcaatgaagaacttaccctgcatacgagattgattgttagtacctgctatgacagctgtatgcatgcgtgtttctaaaactagatgataattgctttatattcacctattgcaggatgacttggaagatcatgttgatgttacaaactcgcgtcttcaggtgagtctgttatccttcttcgctgttgttaatagtagaagctctataactactgtttgtcacgaattgtttaacactcacataaattaaacattgaacgaacttatttcatccagcgtgtgcaaaagaggcttgcaattctgaacaagcgcaccaaaggtggctgctcatgcatgtgcctgctgctatctgtcgtcgcaatagtgatccttgctgttatcgtgtggcttcttatcaagtatatgtaaaatggatccatgacgtttgttcaacgcatcacttctgcgctactcatcaaaatgtgcagccttttaaagatgtaccatggttttcatctcggctttgttctcctgggtggaatggttttatcagtgtgtgtacgtcatatgaggccctggcatatatgcccaacaatatgtctgagactaccactcacgtggaatttgttggattgcaatgagaagtatatatatgtttttgtgtgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0277900, RefSeq:Os08g0277900