Os08g0304900

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Revision as of 12:55, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0304900| Description = Similar to AtMMH-1 protein (F6D8.28 protein)| Version = NM_001068034.1 GI:115475805 GeneID:4345225| Length = 8020 bp...")
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Gene Name

Os08g0304900

Description

Similar to AtMMH-1 protein (F6D8.28 protein)

Version

NM_001068034.1 GI:115475805 GeneID:4345225

Length

8020 bp

Definition

Oryza sativa Japonica Group Os08g0304900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:12798919..12806938

Sequence Coding Region

12798934..12799162,12800246..12800297,12802018..12802075,12802851..12802919,12803011..12803136
,12803453..12803503,12805010..12805087,12805860..12805943,12806040..12806075
,12806163..12806609

Expression

GEO Profiles:Os08g0304900

Genome Context

<gbrowseImage1> name=NC_008401:12798919..12806938 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:12798919..12806938 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccggagctgccggaggtggaggtggcgcgacgggcgctggaggagcactgcgtcgggaagaggatcgtgcggtgctcggctgcagatgacaccaaggtcatcgacggcgtcgccccgccgcggctggaggcagcgcttgtcgggaggaccatctccgctgctcgccgcaagggcaagaatctgtggcttgcgcttgattctccgcccttcccttccttccagttcggaatggctggagctatttacatcaagggtgtggaactgagcaaatacaaaaggtctgcagtgagcccgactgaggaatggcctttgaagtattccaagctgcttgttgtaatggatgatggtttggagttttccttcactgataagaggcgttttgcaaaaattcgctttcttgacaatccagaagctgtcccaccaatttctgagcttggaccagatgccttatttgaacctcttcatcttgatgattttgtagagtcactaagtaggaaaaaagctccaataaaagcccttttgcttgatcagagctttatatcaggaattggcaattggattgcagatgaagtgctttatcaggcaaggattcatccaatgcaaacagcatcgatgatttctaaggagaaatgcaaggcactccatcagtgcattatagaggtgattgaaaagtccttagaagttggttgcaacagcagtcagtatccagaaaactggatatttcactccagggagaagaaacccgggaagaaaattgacttcattacagttggtggcaggacttcagcatatgtgccagagttgcagaagctggacgggattgatgcaacagcaagcagagcgaaaataagcaaagaacagagcaaatcaaataaagctgctcgtgaagtggacgatgatgaggaagaggctaaacctgccaagaggggaaggaagcaattagtgaaggcaacccatgagatccaagaggatgaggaagatacaaaagaatcaaagagaggaaggaagcaaccagcaaagacatcgaagggctcgtggaagaaagctcatcattcttctgagggtagtggtgacgacgacagtgatgatgaagcagttgataaggtggtcgcggaacaagggaagaggagggatccaaagcaaccagcagaggcgaaaagctcgtcagacaaaggaggaagtgctgccccagcaaagaggccacagaggaagaagcggcaattatag</cdnaseq>

Protein Sequence

<aaseq>MPELPEVEVARRALEEHCVGKRIVRCSAADDTKVIDGVAPPRLE AALVGRTISAARRKGKNLWLALDSPPFPSFQFGMAGAIYIKGVELSKYKRSAVSPTEE WPLKYSKLLVVMDDGLEFSFTDKRRFAKIRFLDNPEAVPPISELGPDALFEPLHLDDF VESLSRKKAPIKALLLDQSFISGIGNWIADEVLYQARIHPMQTASMISKEKCKALHQC IIEVIEKSLEVGCNSSQYPENWIFHSREKKPGKKIDFITVGGRTSAYVPELQKLDGID ATASRAKISKEQSKSNKAAREVDDDEEEAKPAKRGRKQLVKATHEIQEDEEDTKESKR GRKQPAKTSKGSWKKAHHSSEGSGDDDSDDEAVDKVVAEQGKRRDPKQPAEAKSSSDK GGSAAPAKRPQRKKRQL</aaseq>

Gene Sequence

<dnaseqindica>16..244#1328..1379#3100..3157#3933..4001#4093..4218#4535..4585#6092..6169#6942..7025#7122..7157#7245..7691#agaggttgaggagagatgccggagctgccggaggtggaggtggcgcgacgggcgctggaggagcactgcgtcgggaagaggatcgtgcggtgctcggctgcagatgacaccaaggtcatcgacggcgtcgccccgccgcggctggaggcagcgcttgtcgggaggaccatctccgctgctcgccgcaagggcaagaatctgtggcttgcgcttgattctccgcccttcccttccttccagttcggtccgtggatctccacaccctctctatagtcacatttcccttcctttccgcaatggaccatttattgcttttctttttattactattattttttaagatagaaccgttcttcaggaggtttagggtttttcttgagttgttttttatttgtgacattttggaatcttgtgtcatgctgttcttgtggatttttcatgtttcgttgacgctgctcttagcgagtcccttattttagttctggtagtagtgtaaatatatatctgtaggttttcttttgtacagaatgcctataaggtaattaattactattaaactaaatgcgcaactcttggagtgctaaatggagtgcctaagcacaatggttgttttggtaatccggcattatcataggcacctcattttttttgtgttatgtcaactttcttggagcatttgatcacaacatatttgtcaatcaacaactacacttctagtctttctccacgtgctacagctatctggatcttagtattcgtgtcttacctaaagaaacggaaacacaaaattaagtacgcaatagctaaaaaacaataaaaaagaaatgaaggtgaacaaatactgaaggagaggtgtgactagctaaagttcaggttaaggaactccggtgagtaaaatttgtactggaaccttcagtgcagtttttgactagtgaaaattccaccaaaatcttgattacagtttctctttgccccttttctttgtaaatacgttttcttccttattaatgaaatgaaacgcagctcaactgcgttttcgagagaaaaaaaaatcttgattttacagtttttgccgagttacaattcagtctttccgccatgtgtgattctgactcagcaaaagtgcaatggcactaactcagtgtgccagcattgacattaaaatgggccaaatttgatgtttagagggctgcttttggacattttaatagttgaaggaccaatttgaggccactgtcaatttcaggggtcatttagtgcattaacccttttaagttctaagtatacaaagttacaaacagtacctaattgttagtttctgttacaggaatggctggagctatttacatcaagggtgtggaactgagcaaatacaaaaggtcagtggcacataatttattaaacaagacaatgaaatggcttatcaatcatacaatattaagtattagctttatatttaactatttaggactattctgcatgcttttcttcattagcagatacaatcaatttgtactgaaacatttgcagccgcctaatgttcttgatgcctgttggtgattctgcaaaagaaaattttcatctattggtgtattccatgaaatcgtggaaccttaggaagccctatatttggcgaatagatgattttactccactttcaggaaagtgttatgattccaattgacataactggagagacacaatcaaatacatagtttggttacactgttaattacaccctgtgctgattctattctgttatggtttttgtcgtaatttttttagaaatgtcagaaaaatctgtgaaaagctatgacgacaaatagtttaagtagatagatggtcaacgttttcatatacttttttctatttttcattgatactagagaaaacataatgtgaatatgccttccttgggttgtatgggtggatgttatttcgtgataagagttatttgggatattattaaagcaatatgcttgcataaaccaaaaaaaaaaatcatttgagcggcaatctagttatgtccagtggaccagcctctgtgacaatacttcaacagtcttgtagaatttcaatatgtgatcatgtctatataatatatatccactagaattttgtgtctgctaagtgttaataagtgtccgttaggtctattaaattggttggaatagttgtagtttatctctactattataagaactgtaaatgtttttgccaaacgtttggtacgtcgtccgtgttgtatatgtgttcccatttggtgcatgcgttgtgcactcttgtcctctgccgtcggtgcgtatggcccgtgttgttgcctgggctaggcccatagctagctggcttccatttgaagtatttttgttgccgtccgtataggactcggtgaggtgctgctgcttgcaagccatgctgtgggctgcctctccaaggtaggcccgcagtgtgcaagaaacaatttccttttttccctggaggacccatcgcatggtcaattggtaaatgaaaaaaatacgagttgaattatctttttttagaaacgaattaaattatccgaatgacaaaaaaaggactcaaaccgtatattaaaataaaattaagttcttattgtttcacataaatataggggttgacatacatatttttagggttggtgcctgtgccggttatcaattttttggctagtcagtatttataatgaaaattccttgtataattttttgttaggaaggtgggcatgatttgaatagtgtactactcatggggcagactaattgatgtatgtaccgtataaaagaacataaaaagattgaaagttttgtttattagttcataatcggcttattatgctagaaattcagttcttttatctaaacaaaatcccatcccctcttgctctagcatatgtcgccttcattaccgtagaacaaccgctctatctctccttccacattgccatcttacttggttgtttgccgatcatgctctctctccatgtacacaatttgttccattttcttcccattgcaatgcacggacactttggctagttcaactaaaatatttagcatatttttcgtgtggcatttgatataggtctgcagtgagcccgactgaggaatggcctttgaagtattccaagctgcttgttgtagtatggattctaatcttctattccacacctatttttttaatgcatccgccagttcactgatgaatttgaaatactccttccatatccaaataaagattattttgtgtttttgtggtcttcaatccaagactttgactgcattgattttatagtaatgtactagtaaattgtaggagctaaatccacatgttttgaaaatactttcaaaggcaagtataacaatattgtttgtgtgaggtttatgtactttttgcatatattatctacttctagataaggtcaccgtgggaagtgtgctgtcaaactgaatttattccattaatagaagtgcagaaatgcattaggtgctagcaagccacccatctagtgcctagcacctaagttaacaccgagagtgttataggggttgttcatgtaggattatgtgatttgtgacctgtctctgggttctgcttcttggacatatttatcttgttcagtctttttaattttattaatgattgaaatatgtatgttatgcattgcacttaagtttattgaaggattctagtaaatatattatattggaattcatacttttggtggtgactttgcttgcatgtttaattgtttttccttctctccatattgtgaaaagaatattactttctgtttggaaatgctctaatccctcatgatactccatgcagttcagtcctgaggcagacgtcaactaatgatccgtttaacactttaacttacatcaggttcatttttatttctgtcaacatcacagatggatgatggtttggagttttccttcactgataagaggcgttttgcaaaaattcgctttcttgacaatgtaactctctagtgattatttgacttcaaagtttatagcttcagtatgctgcagtaattcactttggaattttgtctgcatgttataatagccagaagctgtcccaccaatttctgagcttggaccagatgccttatttgaacctcttcatcttgatgattttgtagagtcactaagtaggaaaaaagctccaataaaagcccttttgcttgatcaggtatcaatctttaatgctccgttctctgatcaaagatctgcagtgtaacaattggatatctgaaattatgcatgcttagtaacagaaggcgaaattttcccttatatatgtgggaatcagaaataactaaaaagttgtctttgtcaattgttgcccagatttggttagtgaacctgaaagtcagtaatttgtgtgtttgactagtaaattaagatattacaattttatacccaaatgtagtctaaataccacagtaaatactacacttttgattctgctagcttctaagactgtttttctgaatcatgtttttcagagctttatatcaggaattggcaattggattgcagatgaagtgctttatcaggtcagtttccctagagttggcttgaaactacagaaaactgtcactgtacaaacacattacatgtttatttgctgaccaaaaacttttcgctgcccaaacacacaaaattttgaatattgtatccagtgttgtaaaaaataatttaggccctgtttggttcatgggactaatccattagtccctccattttagtccctaagaatccaaacaggggtgactaaaagggactaaaaagtgcatatgggactaaaattccattagtccctcttggaggaacttatagggactaaagtggcagcctctcttctctctccctcggtccacgtgcctttagtcccttttagtccctgaatccaaacagtaggggcctaaagtttttagtctacggactaatttagtaattttagtccagagactaaatgatccaaacagggccttagcttcataggttgtttggaggccacggcagcaggcccaattggcacatgtcacaagcagctcggctgtgctggaaatggtgcagtacctgtgcatgaattacatgtttagtagtagtactccaatttgttaactaaagattagttatttgcttagttatctggttggctagatattcttatttgggcttgtctcgtcatataaaatgggcagctttatttgagtttaagtgtttgaccatagaataatatatttacccatatatcgttctctcttctccatcccatgacctaagcccgtaacacattctcttctccgggccatcaatcctgagccatttgtttcttccatgtacccaatcctcatgatataggccatagatgagatatgatgttgaacctaacatgtgggatttagctttggtttaagtgattgtgtcaaataaagtgctacttctatgggaatatcatgtatccccatttaggcatttttttctacagaacacccaaaaaattgtgtaatttgctggtagacatcgcaaaaacatgtcacggctgaaagacaccctagaaaatcggtagcttgccggaggacattctcaactcaattggagtgagaaattcttcaaataggggataatacccctggagccataggcttcaaacatggtgttggagtgaatatttgaaaactatgcaactgtaaatctgtcgttaccccaactacattgctagcatacatcatattccatcttcacgacatcctcaggtcagaagttttttggcctaggggcattctcacctttttgaaagtgtcctccggcaaattcctagtttttttagtgtctttcagccatgacatgtttttacgatgtctgccagcaaattacacaaattttgagcatcctgtagtaaaatttgtcttccatttaaccaacaaagatgtggccttgttttagacataaccttctttgggcatctaaattgtataatactaggttattttttgtgttattcttttcataaaaaaacataggcatgtttcatcctttgcttgcttgatgcgtaggcaaggattcatccaatgcaaacagcatcgatgatttctaaggagaaatgcaaggcactccatcagtgcattatagaggttagtgtgatgtgtgtcacatggttgttctttaggaatggatagcatgtggcatcctatatatttataaagttcatccccactaagtttagttaatgctaattctctcttctctcatgaagctacatcaccttaattgtttttggcctttagatgatttcatcaagggtgcaaattgcatctcctccccaaaagccacaccatacaactcaatcatttataacctttggataattgattaatgtacaaaatatataagcaaatgaaagaaaatggtataataagtaaaaaagaaaattttataactcatatcgactattttatcacaattctcccacggcaacacgaagggtacccatctagttgatttgtgaacttgggtgcattttctatttatttatcaattcaaccatatataaaaaaatgattgcattttatatacgaattagatactgatatctgagtaatgtatcatgttagcatatactgatatctgaatactagatatgcacagttgttttttgtgtcttgcctgaactcaagaaaaacacctcttatataatgtatcatgttagcatatacattgaaaatataactgaatattagaaatgtttcaacatattggcatattaagcccaataggaatctggtttacctgttgagtattttcatcgcaatgtctttactggcccaataatatcgcaatgtcattattggcataaggagtccatttctgtgtatgataatcttatttttgtgtctatgactctaggtgattgaaaagtccttagaagttggttgcaacagcagtcagtatccagaaaactggatatttcactccagggagaagaaacccggcaaggcctttgtggagggtctgatcatcttttctttggtaaaacatgtgttcgtgatgcttagcattattgaagattgagttttgttgcttgcagggaagaaaattgacttcattacagttggtggcagggtaagtcctttacccatttggatcaagctcaatatatctttcatgcgttgcgctgatcgctgatcccattctcacttgtttgttcagacttcagcatatgtgccagagttgcagaagctggacgggattgatgcaacagcaagcagagcgaaaataagcaaagaacagagcaaatcaaataaagctgctcgtgaagtggacgatgatgaggaagaggctaaacctgccaagaggggaaggaagcaattagtgaaggcaacccatgagatccaagaggatgaggaagatacaaaagaatcaaagagaggaaggaagcaaccagcaaagacatcgaagggctcgtggaagaaagctcatcattcttctgagggtagtggtgacgacgacagtgatgatgaagcagttgataaggtggtcgcggaacaagggaagaggagggatccaaagcaaccagcagaggcgaaaagctcgtcagacaaaggaggaagtgctgccccagcaaagaggccacagaggaagaagcggcaattatagacccttacggcgggtggtgaactgtctgaagtaccttagggtggtgtttggttcggaagtggtaacgtaaactctcatggtattgccaccggccgtaacagctaccattgtatccgattacacggttagtttggttgcagacggtaacatcatttgtttacattacggcgtttggttgagggttgcagccaaggaacgggaggccgatccacaggacacgattcgaaatttggaacagaaacttttgggaagatcatttgcttggagaactgcttgcttccagacaactattgatcaaataactgattaaatgaagctggtatacaagt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0304900, RefSeq:Os08g0304900