Os08g0385900

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Revision as of 12:59, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0385900| Description = Similar to Transformer-2-like protein| Version = NM_001068241.1 GI:115476219 GeneID:4345455| Length = 6298 bp| Defi...")
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Gene Name

Os08g0385900

Description

Similar to Transformer-2-like protein

Version

NM_001068241.1 GI:115476219 GeneID:4345455

Length

6298 bp

Definition

Oryza sativa Japonica Group Os08g0385900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:18277412..18283709

Sequence Coding Region

18279393..18279415,18279494..18279707,18280091..18280201,18280318..18280467,18282330..18282384
,18283158..18283444

Expression

GEO Profiles:Os08g0385900

Genome Context

<gbrowseImage1> name=NC_008401:18277412..18283709 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:18277412..18283709 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgcaatccaaggaagtgaggtacactgcacgttctattacgcctcctgcagatagaaatggcacttcaaagtcaaagtcacccactccagtgagacgcagtacctctaggtcacctcctccaaagaagagtgattcaaggtctccacctccaaggaggcgcagtacttcaagatctcctcgccctagaagacatggcagatcaaggtcaaggtcaagggataggagtcgctccaggagccgagacgatgatttaagaaacccagggaataacctttatgtgactggattatccactcgcgtaactgaagaagaccttgagaagttctttagtaaggagggaaaggttcaaagctgtcatgttgttcttgatcctcgtacgaaagaatctcgtgggtttgcctttgtaactatggattccgttgatgatgcaagacgttgcataaagtacctgcatcgcactgtacttgaaggtcgcctggtcactgtagaaaaagctaaaagaactcgggagagaactcctacacctggaaaatattgtggccgcagaggctctcaaagaagttccaggagcccatcaccttaccggtctcgcagaagggagcgatctcgctcaagagatcgtcagagggaccgctcacgctccagggatcgccgcagggaccgctctcgctcgagggatcgccgcagggaccgctctcgctcgagggatcgccgcagggaccgctcgcgctcaagggatcgtcggggcagctctccacatgacagagattctcacaggaggcgtggagacaggtccaggtcaccggctaccaacgggaaccacaaaaaggactag</cdnaseq>

Protein Sequence

<aaseq>MSQSKEVRYTARSITPPADRNGTSKSKSPTPVRRSTSRSPPPKK SDSRSPPPRRRSTSRSPRPRRHGRSRSRSRDRSRSRSRDDDLRNPGNNLYVTGLSTRV TEEDLEKFFSKEGKVQSCHVVLDPRTKESRGFAFVTMDSVDDARRCIKYLHRTVLEGR LVTVEKAKRTRERTPTPGKYCGRRGSQRSSRSPSPYRSRRRERSRSRDRQRDRSRSRD RRRDRSRSRDRRRDRSRSRDRRRDRSRSRDRRGSSPHDRDSHRRRGDRSRSPATNGNH KKD</aaseq>

Gene Sequence

<dnaseqindica>1982..2004#2083..2296#2680..2790#2907..3056#4919..4973#5747..6033#ggccccgaaatccccaaatcccccaccccacccctcctcttcgcctcgccgccgccgccgccgccgctcctccccctccatcccacggccagatccgccccctccggcgagctccacggcccccgtctgccgccgccgccgccgtcgcgcccccacccctcacgtaagagaccctatcgctctcgcctccacccctcgcccttccttactcctctctcgctcgatccgccctagttttgctctcttcttcttcgctgcgggcgcgactcgatcggaggatttatttatttatttacttttttgcatttacctcctgtgcgtgctcgtctggtccgtacttcctcggatttggtcgctacccgctagggttcgatccgcccgttggcaagatctgggttgttgtaaaatcgtgtctctgaataatcgactttgtataatcggtaggaccgtagaaggatctcgaagctcggaaattatttgaacaatgagaagatagaaatgggtttttgtttaactcgcattttttgttgctaatatttgaccgattttcatcttgtttccttccaggtgcacagcagttaactagttcgtgggattggaggatttcaggtacccaccggccaccgctgctccgctgcttaccttaactccttttaagccttgttcggacatggggatggagttggatttggagggtgtggaattattccccctcattccccttcgatccctccctcttggggattgacccaacaaggccttaagtgaaaattgtagagggaataggagatgaaatgatcacaaaaggatcagcctagattgaaatttcttgcttcatcttcaactttacttgccagaaagagattatgtgctgcggttacactagacaacattccgtgtttggccaattaactgttcatttagtctggcataaatgcgccttttgtttctttacggttcttattgctaattatcaagctgttgtaccatattagtttgtgctattctgttgtggctttgtttcttgattcattgtcaagtgtttgggcattcatgtgcattatttattcatcatactatgtttttgtgcttgctttgtattaccatttcattgtccaacgtaactaatgaatacttgagtgttgtgttgcacctgttacattttttgcatcgttgaacagtttttacttattcccatacaactatacaagtaactagaatggaatcaacttggtagatatttgtgtgcaatcgttttacatatgcctagtgtttgaaaagcgtgataaaacaccctcacccaagttactcttgaccctaacatgaacaatttgtattgcattcagttgttgagccaatgtaataatatgtattttcgctcagtgttaagagcccaatataacaacatagattattgctgtaaaccaggatgaatatgtttgtcgaaaatgtaacccgagtatagatatgagataaatgaggttcttgatggcaagattgttcattcagttcagcatattcacgtcatgttatggacattactataagaggttaaagggcatttatatcatatattctataaactccacactaattttcattaacctgccaatttttataccttattagaatagtctatttttatcacgtcacatcaatttaaactggtgtaactatcttttaagtttgcattgctggttttttagataagcacacttgccttttctaaaaaagtaagatttgatgctgatactcttgtgttcacaatttaaatgagtgcttgctatatataggcttaagtatgtctatgattcttttcttaccatgaaaagtattgcagcatacacatttatcattcatagctacatctcaatgtttacacttctgttcataattatttagttgttttttgtcaaatggtttttatgtaatttagttgtttttttatatctgatgtttttttcctctgtgttcttattagatgtcgcaatccaaggaagtgaggtaagtttttcctatgatatcttccaccaaacaatctttattttttatgcgttgtaatcaatacaattatattttcaggtacactgcacgttctattacgcctcctgcagatagaaatggcacttcaaagtcaaagtcacccactccagtgagacgcagtacctctaggtcacctcctccaaagaagagtgattcaaggtctccacctccaaggaggcgcagtacttcaagatctcctcgccctagaagacatggcagatcaaggtcaaggtcaagggataggagtcgctccaggcatgcacatttctcagtactagcatcatttttgtgtgatgcaatgggttgcagctagatatactacaagttcaataatatacaatgctacaaataaatgcatatcttcaaatgtaaaacttgcatacatgattatatgagatcaattcctcacttgttgtatacacatgtgtaaaagtaacacttacatacctatatatttgtaacctaccaataccattaactgattaacccttagcttcctctttttagagcataagatcagtttgtttgctgaaggatcatgatatattagttgcagtatcttaagttgcacattttaattttattagttattatgcaaagctacatagtactgagtttcagttattgatcttgaataggagccgagacgatgatttaagaaacccagggaataacctttatgtgactggattatccactcgcgtaactgaagaagaccttgagaagttctttagtaaggagggaaaggtattgtccaaattttgttaatgcatgcattattgtcctgattatgattctcatttatcggattatcagttctggaaaccattttcacacttcgctaattagtatttaattttcaggttcaaagctgtcatgttgttcttgatcctcgtacgaaagaatctcgtgggtttgcctttgtaactatggattccgttgatgatgcaagacgttgcataaagtacctgcatcgcactgtacttgaaggtcgcctggtcactgtagaaaaagtaagatgcatctcacactaactgataaaacagttcattatccctttgcttctgtattcctatcaattaatctgggtaggtctgttctcatgttttgtctatgttttatccttcgtatatttgtgggaagcatttctagaatataagaaccatatataccaactgcaaattctcaagtacttttttccaacatgacatgataatctgttctttttttccttatcttgaatctttagatgcattagtgacatcctggtttcttcctatgaaaactgtacttttaaattgaaacttgaataactatattcagatcagttaagaactttggtaagtattgaaatgtggttgggacttaagaatgatgtagtataagtaaactagtatgtcagtgttcggatactagacatggtcttttttggggttgagcctaatttgatatttttttataaaatacttttatggtatacaaagtactaaatgtagctcattctaaagaatggtacatgattgcttataacaataatatgttgtgaacaacttggaagcatgcaaaattatctaaagcatccaaacacacgtagcatcggattttgttcacaaacgtactccctccgtcccaaaaagaatcaacctaggtggggatgtgacccctcctaggatgtcctgatacattgtcccaggatgggtcacatcccctcgtaggttgatttttttttgggacggagggagtaggatcgatattgttgtagcaggatcatcatcctagagatcctactatcaggatgggatattacaatggccctaccagatatagatactactggtccatcatgatatgtattgaaaggttctggctggactgtgatgtaataggatcatacctgaagagatgtatagggaagctacaaccttgcaagtaaagacggtaagaaaaacttaagtttgtcttgcgggcaataaatattcaggggagcccacttagggactgtacacaggtgaaaggatataaactagacggaaatagtttgtgttgtgctctcatgctgtcctagtgtgagaatggagaaagacctcttctctgcctgttcaaatggggtcttaactcctcgtgctgacttcctgaacttccagtttatatggtgagctgcctcgacgtcaacctggttggtgcatgccatgctctcttcgaccatggttgacaccaatccgcttgtgctgctggcctgttggtgcttatcaccaactccaccaagctcatcttcaccgcttatcgtctgcacctccctcaccaacatggcttaccctctctgcaccaacctgagggctgatgccacttagcggttttggagcgttgaacatgtggcacgcgtgctttgcatcaccgactcatcatcaccaacctcgacctcatcatccagcaagttccacacgttgtctacatcgactgaacttacgtgccgctgacgtgtcacgacaacaccactcaggctaccgtactgatgcatgcttcatcaacatgaatcatatgattggatgcatacaagaggcagcatccattgcttcaccatggcttcatcagtaatggagatgggcaaaactcgactttgattgagctgaaatgcaacgtaaagttattcccatctacttgtatcacagggatatttgatagcgtagttttaatgatttgttatattatttttagcaaatggatatacttaatttcacttttcttatgttgatattaagaagcaatttatgtccgaacgaatatacaaattggtcccaggttccttctgcatgaagttgaccatttatttcatcttcaagaatactaacatttgtgcaaactatcttcatgacaggctaaaagaactcgggagagaactcctacacctggaaaatattgtggccgcagaggtatgtacatgacatcctttctttctttctcaagtgtttttttgttactcatattgcttggattgctgctattagttattacctaggattcaagcttacaaggatcaaaatgtcatctgcctctttacaatgtcatccaataaagttgaacacttgaaccaacacatagaagattagcatggtccctggactgtttgttttttactttttagtcaattcttgattttatttttcagtaataaactaaatctttccccttcccataaataatgagctcactgtacctgaagaggcttctgcttatttgtgatttgtctatggaattttgtgttagatacatttcgaagttccaagttccaagtacatattgttgcatagtggcaagtcacttttctcactagagggagctacagtattttttaagtctccagtacatgattaattttagcttcaactatctggtttgataaaaaaaaatggaagtatatacccctaattaatgaggctatgccatattttcattagactgttcctagccttgtagaatttctcttgaaaaaaaattataaaaatcttcagtttagtttcgttgatctgtgacaggcttactctccatgtcctgattcgtaatattaggattcgttacatcccgtactagattaacttattctgttacatctcattttagattaacttattctgggacggagtttgtatcatatttcaacaatatatgtgatattataaccagatgttcattctgtgtaattcaggctctcaaagaagttccaggagcccatcaccttaccggtctcgcagaagggagcgatctcgctcaagagatcgtcagagggaccgctcacgctccagggatcgccgcagggaccgctctcgctcgagggatcgccgcagggaccgctctcgctcgagggatcgccgcagggaccgctcgcgctcaagggatcgtcggggcagctctccacatgacagagattctcacaggaggcgtggagacaggtccaggtcaccggctaccaacgggaaccacaaaaaggactagcaagttttcccttcgggtgtttgtaggactggatttctgtttccgggatattattgagtaccggtgtgaacttaatggttcagtatcagacagcgtggtatggagtctcctagcagcttggctgaaatttggttaagcgcgttatccgcttactttctgatgagaagatattatatattgttataacttatatgatatttcagtgtgttctgggacaaaccgcgaacgattgaactttgtggaattcatatgattggttgcttat</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0385900, RefSeq:Os08g0385900