Os08g0386700

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Revision as of 12:59, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0386700| Description = Similar to Avr9 elicitor response protein-like| Version = NM_001068244.1 GI:115476225 GeneID:4345458| Length = 5857 ...")
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Gene Name

Os08g0386700

Description

Similar to Avr9 elicitor response protein-like

Version

NM_001068244.1 GI:115476225 GeneID:4345458

Length

5857 bp

Definition

Oryza sativa Japonica Group Os08g0386700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:18331588..18337444

Sequence Coding Region

18331939..18332054,18332413..18332476,18332581..18332630,18332835..18333028,18333570..18333633
,18333706..18333778,18334129..18334252,18334738..18334825,18334911..18334961
,18335065..18335136,18335246..18335358,18337029..18337051

Expression

GEO Profiles:Os08g0386700

Genome Context

<gbrowseImage1> name=NC_008401:18331588..18337444 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:18331588..18337444 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagatccgagaggggggcccgcggcgcggggcggcgtcggcggcgaggtcgccgatgtccgccatgatgctcgccatgttcgccaccatggcctccttctacgtcgccggccgtctgtggcaggatgcgcagagtagggtttacctgattaaagagctcgacaggcgaaccggccagggccattcgacgatatcggtggatgataccttgaaggttgtcgcatgcaggcagcaaggaaagaggctggcctcacttgagatggagctggctgcagcaaagcatgaaggtttcgtggggaaatatacctatgagacaaatggaactaactctagaaagaggccactgattgttattggaataatgacaagctttgggaggaaaaactaccgtgatgctgtcaggaagtcatggcttccgacaggttcaatgctgaagaaactagaagaagaaaaaggcattgtagtgcgcttcatagttggaagaagtgtgaaccgaggagatgcttcagacagggagattgatgaagaaaatagaagtacaaaagatttcatgatcttggatgatcatacagagtctgaagaggagagtcctaaaaagacaaaaagtttctttgctaatgctgcagagtcatttgatgctgaattctatgctaaggtcaatgatgatatatacataaatgttgacactttgagtgcaatgctcaaagaacactgggacaagcctcgtgtctacattggctgtatgaaatccggcgaggtcttctctgaatcaactcataagtggtatgaaccagaatggtggaaatttggtgatgggaaaacgtacttccgccatgcttctggtgaaatgtttgtcatctcaaaggctgtagctcaattcatctctataaacaggtctgttctccggacatatgcacatgatgatgttagtgtaggatcatggttaattggtcttgctgtgaagcatgtaaatgaagcaaaactatgttgttcatcctggccctcaggagctttgtgttcagctctgtga</cdnaseq>

Protein Sequence

<aaseq>MQIREGGPRRGAASAARSPMSAMMLAMFATMASFYVAGRLWQDA QSRVYLIKELDRRTGQGHSTISVDDTLKVVACRQQGKRLASLEMELAAAKHEGFVGKY TYETNGTNSRKRPLIVIGIMTSFGRKNYRDAVRKSWLPTGSMLKKLEEEKGIVVRFIV GRSVNRGDASDREIDEENRSTKDFMILDDHTESEEESPKKTKSFFANAAESFDAEFYA KVNDDIYINVDTLSAMLKEHWDKPRVYIGCMKSGEVFSESTHKWYEPEWWKFGDGKTY FRHASGEMFVISKAVAQFISINRSVLRTYAHDDVSVGSWLIGLAVKHVNEAKLCCSSW PSGALCSAL</aaseq>

Gene Sequence

<dnaseqindica>352..467#826..889#994..1043#1248..1441#1983..2046#2119..2191#2542..2665#3151..3238#3324..3374#3478..3549#3659..3771#5442..5464#agggtgctctctctctctccaaaattccaaggcgctgcagcagcagacagcaggtttgagagagagagaagaaaaaaaaaacggacaccgaaactgtccgagacgcgacaccaaccggcttttctctctccccttccaccgccaccgccaaccccttctagaatcttctggaatccagtcggtggcggagggcggaggcttctggaaggcagcgcggggatctcggcggcgccggaggcgtccatggcgaggccgtgaagccctcgctcgcccggaggccacgcgacgcgcgggttaggaggaggaggagggatccgggtgggtggggtgggggggacgagatcccgcgagatgcagatccgagaggggggcccgcggcgcggggcggcgtcggcggcgaggtcgccgatgtccgccatgatgctcgccatgttcgccaccatggcctccttctacgtcgccggccggtgagcccgtcccctcctctcctctcgctgcattagtcgcttctcgggaatgtgtcttcttcttcttcgagtgatttgccttcgtttggagatggttctggattgttgggctgtcacattggagagttcgtgctctcgtgaggaatggaggattttgcatttgcatatacacaccttttggatcttgcagtggcaaggtttacggtttgctttttgtttttttaatttaataataataattcattagttctcgtgcgaattattattagttttgtttgtttgtttactagtagttttttttggttttgacgtttgctgtccctgggagggaaattctgttgacctgtccgaaattcagtctgtggcaggatgcgcagagtagggtttacctgattaaagagctcgacaggcgaaccggccaggttggtgccttcagatctaccctcttctactatatcaattacaactagctagcttcaattgagagtaaagaataacaggaacttctttgttgtgcaaaattcagggccattcgacgatatcggtggatgataccttgaaggttgtcgcatgcaggtaattctgatctctactgtatgactacaatatagtaaaactgagatgttgttgcaaaatttgttctttcttttccccaattatttttggctctatgttgattcgggtgctctaaatttgcgcggcttgtttagtttgagacttcagagttgtagtgaatgctctgtgctaattgctgaacatctgaacatcattatgttttaggcagcaaggaaagaggctggcctcacttgagatggagctggctgcagcaaagcatgaaggtttcgtggggaaatatacctatgagacaaatggaactaactctagaaagaggccactgattgttattggaataatgacaagctttgggaggaaaaactaccgtgatgctgtcaggaagtcatggcttccgacaggtaccatttcgtacttgcgttcctcactacctgtggcacttttatatcctataattataaataaattaatacggtcacctttacccttgatatttggtggtcataattgactttcgaagtccttaaaagttactacttttttttatcatggggcatgggttttttcctcaaacgtacaagagaatggcgcgcgtcattaagaagagaagaggtatacaaggggaggaaaataatcccattataaggggcagaaagtacaatgcatggggcatgggtttttgtagctgtctatttataatattaatcactagaatgttcggcactctagttcataatctggactcataggtggctgaatgaacatggagaataaaatgtatttctgttgctgcataataaagtggcaccttttttttttgttgacggttatcagttgatgtaaataaaaatgagttggcttcatttcattgtttttccgtcttactgttgcattaaaatgatgtctgttttttgggtgattttaattttcttctctgtacaggttcaatgctgaagaaactagaagaagaaaaaggcattgtagtgcgcttcatagttggaagaaggtaccacaggactccttgctaatagaatgactatatgaggtctagatatctgatagttccttatccatgtagtgtgaaccgaggagatgcttcagacagggagattgatgaagaaaatagaagtacaaaagatttcatgatcttggtaagcctgattgatcaatcaaacatgtggtagtacatatttacaacattgaatgtgtatataaaatatttttcatcataattgttcaccttattcatgttgattacatgttgcttgaaaaccagataaacgatgtgtgtgcatacttgattatatacgccttctagtacaacaacatctgcctttaatcccaagcaagttgggtaggcttattgtgtatgcttttttagtatatgttaaaaaaatcgtgcgctgtgacttgtaacaatgagactccatgttcatattttcagattactcgtttggcctgttgatttacttcagttttttactattaaatgacattgcaggatgatcatacagagtctgaagaggagagtcctaaaaagacaaaaagtttctttgctaatgctgcagagtcatttgatgctgaattctatgctaaggtcaatgatgatatatacataaatgttggtacgtagcatctcttcatatcatagctgtacttatccaatttggtatagttttgtttgatcaatggtgcttctttctgttcaaaatatttgacacagtatggatgtgcatgagatattgtactagtggcagaagttaagaaatggttgaccagtatgcatccttcaatacaaaagtgacaactaattttggttaaagggagttttagccatccgcatatggtgtttctattagcccttttgttattgctgacagtgttccaacgtattttgttgttatgtgatcatgatgataatgaatttggggggttggagcacggtttcaattagctgtggtgcatgcctcaatcttgtgatcctcactgacctgaataaaaggtcaatgtacacgttctaggatgctggatggcaatggctgtataggtgctataattttgaaatgttgcacaaactattaataacattgaacaatttgggtttgtgcagacactttgagtgcaatgctcaaagaacactgggacaagcctcgtgtctacattggctgtatgaaatccggcgaggtcttctctgaatcgtgagtgctttcagcaattctttctggggatattggtgctgtatttttcctttgcacatttttctaacagcttccccaaaaacagaactcataagtggtatgaaccagaatggtggaaatttggtgatgggaaaacgtaagtaatttacattaggaaaacatttattgcgcatttgctagttgggacatttaaaaaaattactattttggcttatctatttcaatttatcaactaataggtacttccgccatgcttctggtgaaatgtttgtcatctcaaaggctgtagctcaattcatctctataaacaggtaagcaatgtatgtagtttgtactttcaacaagggtctaataggtggaaacaaagagaagtttcagtaagtacttttggtgatgtatctttgacacttctgtatgtaggtctgttctccggacatatgcacatgatgatgttagtgtaggatcatggttaattggtcttgctgtgaagcatgtaaatgaagcaaaactatgttgttcatcctggccctcaggtaattatgcctccttatgaagtaaaacaatgttactgattctgttttctggttgataagtgattgttatcctagtgactcatatgattgcgtctattcaaatgccatatcaagacagtgactacgtatttatcactgaaacttctgatacttttgatataaacatatgaacgtgtgataaccttagttcatcagattacctacatactgaatgtaacacaggatagtaaactcgggagagatagatgatcaataccttgaggcaggataataggtgctcctaacaatgcttgcgcttactcagagtagctagcaattaaccaattcttatctcttgaagtgtcctacccccaaagactatccctattgtggtgtactatgcatctgttctatgcacgtttctccaaactaatgtattatatctaatcagtcaactaaacaacctatacttgaatttttcactgttagatattgatgtagtggttatgcaccatgtctgctgcttcctggtgagtcatgatgtgcacgtgagagcagaaaaattcagattatataatctccacgaagttttataagagacagaaaaaaaacgaatttagtcataatctatgtttttaaaaaatacaccatagctgcaaaaactgtcacactacctatctaggtaatagtcggtttcctaagaatacattgcagtatactggatagtttgctatagtggtttttctcaggggtggaacaagaaattgagaacatattgcggcatatattttggaatttttgttactcatggtggtgccaccaggagctggaataataaattggtgataggggcgtgaatcctatgagacaaccgtaatttcctttggactgtgttgaagcatggaatgccatggtgcttttcatgagcaatacactgcacataaatttactctacttgagaactaacatcagtatttggttttaaattttagaccattccacgtgtatgtcaagttatgggttggctagaggttgggtggtgtaatggtctcaaggtttactgaaattttaaaacataattttggagttgatttttttttggggggggtggggggtgggggggttcattgtagtttattttccagcattggcttttgaattgccaaggacacaaatgtaaaatttttaccaacaaattattttttggtaaacggcttatctgttttaggtcaaaactatcaagcttaaagaatggaactgctaaatggaatgcaagtttcaggagtcagaattgttcttatcaaagatttgatttgttgtgcacttggcaaagcagttgttatgatgttgggcctcattacctgctgtcagttaatggtcctgtatctggggtgcatttctatggttattattattgtataaacatgctaggcatactccatccttttacatctgaaaggatcttgcataaatattgaggctagaggtcatgtagaagtcaaacattttttgagaacggtgaaacaaaatgtggttagtctacgtctatgtttgtggttattttcccctacctatttgtgttttttttgtggggaactatttgtgaattcaatgcttgtgttgttaagtcatttcactaggaacttccataaaacataaattctaatgatccacaaaattgtactttgcaggagctttgtgttcagctctgtgacaagcaacactttcgaggggaagaattttgtgaaaattatgttaggatcgagattatacggaatgaagcataccatctgcagacaatgagatcaaaactggcgttttgaagattttgttttcttctgccgttttctgtggctcccgttgatcaagcagcactagttcaaactgagccatatatatcttctttttgcgaaggaaaatcttgtactttttttcctgcaagaccacactgctaaaatcagggatcctaactaaattccatctgcagattgtatcttgattttgcctgtcgcttgtagatgtccacccttaccattcttttactgatagacaccattgttggagtgacaaaatctaatagcaaatcaggaaattattttactccatc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0386700, RefSeq:Os08g0386700