Os08g0399600

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Revision as of 13:00, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0399600| Description = Similar to Ethylene-responsive elongation factor EF-Ts precursor| Version = NM_001068284.1 GI:115476305 GeneID:434550...")
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Gene Name

Os08g0399600

Description

Similar to Ethylene-responsive elongation factor EF-Ts precursor

Version

NM_001068284.1 GI:115476305 GeneID:4345504

Length

6217 bp

Definition

Oryza sativa Japonica Group Os08g0399600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:19147692..19153908

Sequence Coding Region

19147959..19147964,19148291..19148380,19148485..19148610,19149167..19149351,19149891..19150065
,19152358..19152438,19152828..19153000,19153094..19153358

Expression

GEO Profiles:Os08g0399600

Genome Context

<gbrowseImage1> name=NC_008401:19147692..19153908 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:19147692..19153908 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcctggagtcagagtgctagaaagcccatgattgggcttctgtttcgcgcccaacaacattctgctcggggttactcttattcagcgttccaggctcacctttcgagcagcaatgtcgatcaaagcgccacacttctcaggagattcagctccgaagttcctgcgtcggagcaaatgaatctcatcaaacagctgagggagaggacgagcgctccaatcaaagatgtgaaggcttccttagttagttgcaactgggatattgatgttgcacagaaggacctaaggaagagaggggtggttcttgctgccaaaaagtcttcacggactgcagctgaaggtttgcttgctattgcacaagatgagaaaagggccgctgtggttgagcttaactgtgagacggattttgtggcaagaaatgatgttttccagtatctggcttcttctttagcaaagttggctttatcagcaagggatcctggtgaattggtttttccttttggtcctgactatttggagaaccttaatgtcaatcttgatcatcctaaacttagtggggagacaacagtccaaagtgctgtcacagaagttgctgccatggttggggagaatgtcaaattcagaagaggtttcattatgtccacaactgcacatggtgttgtttgctcttatatgcacacatgtccccagccaggtttgggtcgtcttgctggcttgatcacactagaggcagaagacagcaatgctcctcttgatgctcttcagagagtcgggaaatctattgcaatgcacatcgttgcgacaaagccgttgtttttatcaaaagaactggtctctgcttcagctgttgaaaatgagagggacatactccggactcaggctgaaagctctggaaaatcccaaatggccatggagaaaatggtggaaggccgactaagaaagtattttgaagaagttgtgcttttggagcaaaaatatgttgtcaatgacagcacaaacatcaagagcgtcctgaatgatttgtcaaaggaagttggctcaaaagttacagttggcaattttgctaggatggaagttggcgaaggagtttcaaaggcctga</cdnaseq>

Protein Sequence

<aaseq>MAWSQSARKPMIGLLFRAQQHSARGYSYSAFQAHLSSSNVDQSA TLLRRFSSEVPASEQMNLIKQLRERTSAPIKDVKASLVSCNWDIDVAQKDLRKRGVVL AAKKSSRTAAEGLLAIAQDEKRAAVVELNCETDFVARNDVFQYLASSLAKLALSARDP GELVFPFGPDYLENLNVNLDHPKLSGETTVQSAVTEVAAMVGENVKFRRGFIMSTTAH GVVCSYMHTCPQPGLGRLAGLITLEAEDSNAPLDALQRVGKSIAMHIVATKPLFLSKE LVSASAVENERDILRTQAESSGKSQMAMEKMVEGRLRKYFEEVVLLEQKYVVNDSTNI KSVLNDLSKEVGSKVTVGNFARMEVGEGVSKA</aaseq>

Gene Sequence

<dnaseqindica>5945..5950#5529..5618#5299..5424#4558..4742#3844..4018#1471..1551#909..1081#551..815#aaaaccctcgtctccctcactgtcccgtccctgcggctgcgctccactcgtcgccgccgccgccgccgccgccgccgccgtcgtccgcgtctccgtctccgtcctcgccgaggtatcccgtctcgtctcctccgctccttgcgtcatctctctgctgaacaggggaggggcgccgatctccatctggcgagcagagcaggggaggggatcctggtgagcatccacatcctgattcatctctctctcccaccgggactacttttgtctggaatttgcttgcgttcgttaaccctagctcttcttctagatctggaagaagctcctctcttaatttcagagccttaaccttaatacaagtaacagtttgttgtttgttccccaaaaagtttggccaagttggatccgccgctgcctagttgcagaaatgggatgacatatctcttttctttagttgagacctaatcggtggagctcgcttttctgatgtttattgatgatagtttagtttaccaacagtactgcatattctgcattgcagaacattgtgagaatggcctggagtcagagtgctagaaagcccatgattgggcttctgtttcgcgcccaacaacattctgctcggggttactcttattcagcgttccaggctcacctttcgagcagcaatgtcgatcaaagcgccacacttctcaggagattcagctccgaagttcctgcgtcggagcaaatgaatctcatcaaacagctgagggagaggacgagcgctccaatcaaagatgtgaaggcttccttagttagttgcaactgggatattggtttgtgcttatttctgattgcattagcattacttcatcggcatacttgtttgtatctgttaatcctattgacagtttgttgatttctttcagatgttgcacagaaggacctaaggaagagaggggtggttcttgctgccaaaaagtcttcacggactgcagctgaaggtttgcttgctattgcacaagatgagaaaagggccgctgtggttgagcttaactgtgagacggattttgtggcaagaaatgatgttttccagtatctggttagtttttatctcagtatctttatgccattcctgatgcctactttttgtgcatgctaaacatatagtgtatttgagcatgtaggtatagcttgttggttgtggcatatcaaaatatgaacagaatcattttgtccatgttttaactttcagtttcttttgtaggttttatttgagtatttcaacattatgacattatgctctgttgcagttgtactcttgaacttctttgatagctgtgtatcttgtaggatattcttttccctatcttagacatcacaacagcatacttatttaactgccttgattgttcagcttgtgcttgtgcgtggtttcaaggtagttaaacttgatttatgatttttttttatatctcatcaaacttgcaggcttcttctttagcaaagttggctttatcagcaagggatcctggtgaattggtttttccttttggtcctgactatttggaggtatgaagttatccatatattaatttgggttatggcgcatttattgtgtaatttatagaagcaccaccaattttaccagtaattgattgactcgtcattttacaaatttgaaaccaactgatctaagtcttcattaagttccatttcatgtaaaattctactttaacaggtgctgtgatcaatctcatgttatcttttcaataatggtgtatctgtatttaagcccactacacactaccttttcaaatagtatggattcagtgtgctgtactgatagagatattaagatacttgtgatcatatttatgtaacacccaccacacagctgcaagagcatccagccatccacctgactaaatcaccaccacgaccaccaccacccccaagccaatccagtcggggatggttgatacgcgattggtcgcgcgccggcacacccgcgcgaccagcgctacccatctagtctcagtatttatacgtttgtatatataccacaatacaaagtttatacgcatgtatatgaggtatatatacatacgtatatagacgataaaatatgtgtaaactttgtatatataccctacattttttatatgtatacgcatacacttttgatgtataaaaaatatgtatacatgtatacaaagtttgtatacaacgtatacaaaatatacaaactttgtatacatacgtatacaaagtttatatacgtatgtataaaaaaggaaaaaatatacatgtatacaaacttagtatatgtgtatacatagtttgtataacaaaccgaaaaaaaaaacccgaaaaagtgaaaaagaaacagaaaaaaaaggaaagaaacaggaaaaggaaaaaaaaaaggaaaagcatggctgtctgccgccctcctctttgcgcgacgcgggggagggtgcgcacgactagccgcgaaaaagcagtttcgaatccagtccaccacagaaagcaggtgcagcaagaagcaaagcaagcaagcaagtacaagctttccatcaaggcagcaagcaacaccaatttaccaccaccaccagccgcacccacacagcaaagacaagcaaattgtggaagaatatctgatagtgtagagtagagtagcagagcacacaagaacagagcagtatatagatactagagaatagactgtagcacagcaaaggccaaagagcatggcttacttgctcaattcctcagtgttggccataattgtgcactgtgctggtgtgctggtgcatatgtccaagcggctggtggcgtggagatggtagatggtggtgagtgcctggcggggagaacagagggacgatggagcagtagaagtcgcagcggagcagtaggagtcgcagcagagcaggcgagctgccagtggatctaactacggtggcggcggcaacgtctatggcgacctcaatcgccatcgcctctcccaaaccctagccgctgttgcacgtgctccaatttggggattaggttgggcagctagggtggggaggtacttatatcctcgcctgtactgagccgcctaggccactagtcgccctcttcactgcatacttgctgccacaactagtctgagttggaccgaggatgactattgaggtggggcagctgccgagctcaccgccaaagtgctaatcgcagtgccaagctgccgcctggcaccgaattgctacctacagctgatttttagcacactgtttatgttggatataaaaggaaacaagttaaaatggctcaaccatttagtcatatgtgacacaagaacttcatggcagtggactggaaatgccatgataaatgtgacttggctctagtattacagaggatgctatgtggagatgatcatgatacaaatgaacatgtttgcaataccagcattaacaaccacattgtagatattgtagccattgtaaatatgtatatatatcctgcttttttaaactacatgaagattttagtgcttatcagatatttagtttgggtaggcttattctacagcccccccttagaataactgttgcgcactatctccctccactagagccatgctctcagagaaaagccacgttgatgtgcgagcccaggatctctctctctctctcacttcctgtgccctttgcacagagggcacagcttcttatcctgtgcacacagtaatgtctgttgctgttcccatgatatgatttggttagcttcatatgatatgtttatcttcttttcctggttttttccatgtgtaagtagatattataaagttgtctcaaactctcaatcatgcagaaccttaatgtcaatcttgatcatcctaaacttagtggggagacaacagtccaaagtgctgtcacagaagttgctgccatggttggggagaatgtcaaattcagaagaggtttcattatgtccacaactgcacatggtgttgtttgctcttatatgcacacatgtccccagccaggtacatgcacaaatctctgccctttggcttttatcaagaatgtagcatgcatgttttccaatcttcttggctaagtttgagtgcacataaccaaatgaaagttttctagtgactactgagcatggatcatacttgtccttgcctttatttattttccttttttttttgtgccggggggtggggtggcagtgggttcagaaatctaaatttgttggactttctggacattaccttccttaatctaaattatagttaatctattctcttagggttgtccagtgatgaattttagcttcttatttatttatttatttagtaggatgcaagctcatttgtaaaaccattgatagtaatacgactttagtgatacttgcctcttacactgagctggccaagcttgctcgcattattaatttgattcctaacagcaatccatattttatgttcttcagaagtatgaagttgtattgatatatggtaaatggtgcaatttctcgttcactgaatgaataagctttttcttttttttctgaaataaggtttgggtcgtcttgctggcttgatcacactagaggcagaagacagcaatgctcctcttgatgctcttcagagagtcgggaaatctattgcaatgcacatcgttgcgacaaagccgttgtttttatcaaaagaactggtctctgcttcagctgttgaaaatgagagggacatactccggactcaggtacgttattctgataaatgttacttcctttgcaccggaaaaatttagcatcactgtaattctatatgattagcttacaattgaagaaatgggcgtgtgctttacatagagatatcaggtatcataaggtcataccataccaagtgttctgatgttatcttaacagaaaaacatacataggcaataatgacctatagttgagagaaaaatgcatatcttgtgataagtcctaactcattataactaaaagaaaatgaaaggaaactgttgactcacaatagaattttctcaattagtattcctgtcacattgttttatgtttatgtaagcaagacagctgggctgttagaattcagagatgagctatgcaatggaacacaatgtgaatccgtatattagaagtttatgataccaattatgtttatttttccatgaattaaatagcaatatcttttgtcatcttctggagacacatgggctacatccatctggaatatgactgaactgcattcaagttatttaagatttagtgacacactactctgaaactttttaggctgaaagctctggaaaatcccaaatggccatggagaaaatggtggaaggccgactaagaaagtattttgaagaagttgtgcttttggagcaaaaatatgttgtcaatgacagcacaaacatcaaggtgaactgataaaaccttttccttttttttaattatgtagtactagtttgaattgtgaattcatggtacataatggttttgcttcttgatgtcaacattttcagagcgtcctgaatgatttgtcaaaggaagttggctcaaaagttacagttggcaattttgctaggatggaagttggcgaaggagtttcaaaggtacaatatatttgtcacagcaacaatggattgagcattttttgggttttggtgggggtggatggtaattttatctgattaattttttgcagttgtgcatatgcactataaaccttcctgtcctttaacagcagatgcactaaacaaactgatggcccataaaaaaagcaatatgttcttttagatatcaattgtttgcgattttactttatggttcttgctaattttctcatccgacttcagtttaatttgacctatccctaattcttcattgctttttttttctccatataatcaactactaaccaaagttttgtgctcatcaggcctgatgagtccactgggtctgaagctacggctcgttctgcatagttttcaagctgacatgaatcaaatgtgataattgagatatgctgaggtttctcttcttctcaagttagatttattagtctcctgagaactgtactactttttccgcggtttggctccaacaatacggtcatatttttctacaaatgctatgtatcaattagtttacaagtgaactttctctagagagtattgtaacaattcgaatttaatgaaataatgtttgatct</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0399600, RefSeq:Os08g0399600