Os08g0408200

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Revision as of 13:00, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0408200| Description = Similar to GAMYB-binding protein (Fragment)| Version = NM_001068312.1 GI:115476361 GeneID:4345539| Length = 6672 bp|...")
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Gene Name

Os08g0408200

Description

Similar to GAMYB-binding protein (Fragment)

Version

NM_001068312.1 GI:115476361 GeneID:4345539

Length

6672 bp

Definition

Oryza sativa Japonica Group Os08g0408200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:19610114..19616785

Sequence Coding Region

19610481..19610621,19610736..19610903,19614154..19614240,19614798..19614932,19615025..19615129
,19615215..19615306,19615394..19615499,19615585..19615671,19615763..19616176

Expression

GEO Profiles:Os08g0408200

Genome Context

<gbrowseImage1> name=NC_008401:19610114..19616785 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:19610114..19616785 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgagttcgagctggaggataacctagagttactcctccagagcatccaggagctcatcgaggaccagggggagaacaaccccttcggcgcggccaaccacgacgagctcatcgctagcctcctccacaacaaccaggagaatccgctgactgatgtgtccgtggaggacgttagggatgggaaggacatgcaggggatcccctgggagaagattgtgttccggagggatcagtatcgggagatgaagatgaagaattacaggaattatcagaacctgagttatgcccgggaggaagctctgaaggactgcaagaaagttgaaaaggatagtccttactacgatttccagtacaatacaaggcgtgctcgcccatcaattgtacattttcagttaaggaatctggtctgggcaacaaccaagcatgatgtttacacggtgcacaaccaatcagtgacacattggtcatcattggaccagacaagtactgagctaatcaatgcggatgactgcattataccaaaacagagagggcatggttcacagtccgttgcaatggtccaggtcacaactatggctgtagatgatagtttattggtaattggtggttttcagggggagcttatatgcaagcgcctggaagatgatggagttcttttcagcacaagagttacagatgatgagaatgctattaccaactctttggagatatatcaggatcccactggatctagacggttggtggctgctaacaatgactgctctgtcagaatttttgacattgagtactttgatttgctgaagcactatgtcttcccatggtctgtgaatagcgtttcggtgagcccaaaagggggactgtttgctgtccttggggaccatgaggatggcttggtagtggatcccaagtgtggcaaggcaatcggtgcacttaagggtcacttggattactctttcgcatctgcctggcatcctgatggcaatatcttggctaccggcagtcaagatacaacctgtcggctgtgggacattagaaacctatcagagtctgtggctgtacttggcggaaggatgggctcgatacgttgcatcaagttctcttcagacgggcggttcttggctactgcagaacctgtggatttcgtccatatctacgattcatatgcagactatggcagatctcacgagattgacttgtttggagagattgctggattgtcattcagcccagacgccgaggccttgtacgttggcatagcagatccaacatacggtggcctcatagagttcaacaggaggcaccaacatcattatttgaactgcatgtggtga</cdnaseq>

Protein Sequence

<aaseq>MDEFELEDNLELLLQSIQELIEDQGENNPFGAANHDELIASLLH NNQENPLTDVSVEDVRDGKDMQGIPWEKIVFRRDQYREMKMKNYRNYQNLSYAREEAL KDCKKVEKDSPYYDFQYNTRRARPSIVHFQLRNLVWATTKHDVYTVHNQSVTHWSSLD QTSTELINADDCIIPKQRGHGSQSVAMVQVTTMAVDDSLLVIGGFQGELICKRLEDDG VLFSTRVTDDENAITNSLEIYQDPTGSRRLVAANNDCSVRIFDIEYFDLLKHYVFPWS VNSVSVSPKGGLFAVLGDHEDGLVVDPKCGKAIGALKGHLDYSFASAWHPDGNILATG SQDTTCRLWDIRNLSESVAVLGGRMGSIRCIKFSSDGRFLATAEPVDFVHIYDSYADY GRSHEIDLFGEIAGLSFSPDAEALYVGIADPTYGGLIEFNRRHQHHYLNCMW</aaseq>

Gene Sequence

<dnaseqindica>368..508#623..790#4041..4127#4685..4819#4912..5016#5102..5193#5281..5386#5472..5558#5650..6063#tctccccctcgcctccgcgtcgccgccttcaaaaatactaataaaaaagaaaaaaaacgcaaaaagaaaagggagggtaggagagaaaaaaaaaaaaaagaaaaaaacttcccgaattccccatcctcctccgcgccgcctcgccggaattcgcctcgaggtccggctaatcgaaggtgagctttggagaaatttggtctaggttttgggggattttggctgccgctcccggattcgtggcccgattttgtgattttttttttgttttggggggagttgttgttagggcagttttcgtgatcggtgattttggttcggtttgcagcggcggttgatttctaggtcggatcgggggggcgtcgggagaatggacgagttcgagctggaggataacctagagttactcctccagagcatccaggagctcatcgaggaccagggggagaacaaccccttcggcgcggccaaccacgacgagctcatcgctagcctcctccacaacaaccaggtgcgacgccgccgccgccgccagcgctggtgcttcccaattgctgcggttgcggttccacatgcggtggaattaagtttctgtttatttattattttttgtgttgctttgcaggagaatccgctgactgatgtgtccgtggaggacgttagggatgggaaggacatgcaggggatcccctgggagaagattgtgttccggagggatcagtatcgggagatgaagatgaagaattacaggaattatcagaacctgagttatgcccgggaggaagctctgaaggtaccttgtttatgctcttggactatccttttattatttgtcgaatcacttaggcaagctatggtgtgaggttcatgatgatccattaggcaattagagtgtccaacgtctcaatctgtgtcatcagttcttgagttcaaaatcatgggaacatgataggctgcattatgggcatgatagtatgggaaaaaaaacataaacgggttgaaataaacatattgtgcatgtgctattgtgctacatgcttgtgtattgtggagacacttatgtgcataaagtcctaaacaaatgtttctatgtggtagttggaatgcctcaattgcctactagcatactaggcatatagatactagtttgtatgagaatttgatgcttgttatttattttccccctgtagaatggatgtgtgttacttggtttagttttcagtaaatcttaaaaagttgtcaattggattgcacataatctacagtaatacagataaatgccaactttttatttaaatcttgagtatctactttgtcgatccccccccctgttttcgatagtttgtcaatataaatggaggaatctcatgtcattctttttctccagtaactgcttagattttctgaatgagcaatccttatgtgttgtttggctgatcccatgaagtgccaagtgttctgtaatgaatgattccagctatgactggttacctccaaacattaacatacacataaaatatacgagtatatactaaattgctactgaacaccattagttacctactgacctgttaccaccatgcgagtcaatccattttatgggcagcttatccaaatgccatggcatactcaagagttcagacagccaatcaaacacaacatgtagatgatttatggtggtttgtgtgcttatgagttatgagtgctcatccatcatggtgttgattacttatcctgcattagctatttaggggtttatttgattaggtgtacatgtgatagcatgaaatcttgttcccataatcccattacttagggcttcttctgaacgcagggattttacaggaaacagtttagctccgccaaaattcccgcgaaaatcctccaaacagaataggcccttaaattgttttctttatatgtttacatggtttttatgttgattgtgtttagttgattataaacctcctctcaattgtttctattgaaattcaaccttttgaaacaattgaaattcaaccttttgtttcacatagcaaattgatacttacaaccatcactagttcacttagtcatcagtcatgaatgtcatgccttaatatatttagcatgagccacccttggactcggtgttgatagctgttcatactcaattaatcaatctcttaagtatcacttctcaccactaacaattgatgatcactagtgacgaacaaaagataacattaagaatgagcttgtcttgtaaccatctgaaaaatataactcatgtatgaaaacgtttaccttttaacatgatataaatgcataaagcatattaaggtaacattccaaaatcctttctccatttcctatcatgggttttctcagcacaccaaatagtcaaacagtctgtccctcatttgtcatttgcatcagtggctgcagggatgatcttatttattcaagtgaactcccttatgcgtggttcattaatattgtagagttagccttatgagattcttcattgatgtccaatgatctatgcatggcacataatcagttgtctgtgatagagtttgaaagaaatgctggaaggttttcacattttcacacagatgatctagtaaaattaacattagaaagcaagcattaaggagagtttatttaatctactctcttcattggagttaatataggtgtttgatgattctggtcaggatctttttcccctaatcccctattatctgcattcttttctattacgatgttggcaaattacatctattaatgtttgtaaagctagcttgaattaaaattttggatgatatgcatgggccatagatgaatctataaaatccaatggaatcattatgatcgttgtagttttgtatctgtatcattatatgcacttcagatagttggagatatccactttcacattattgacctgtcatttgtttagggcaacatatgtaaagacagtatcaatttggggtagggtaattatttcctcttatattcatgaaatcagagaaattctgataatcctgccacatcccagaagttaagttatttaggtcaatttgaatcaaaaggagtattttagaaagaattgtatgctgttgatttgactgaatgtattgtactaactcccacttaaaagttatgtgagctatggcaattttagtattttctttttaatcgataaaaaaaacctcaaaagatatacatgaagcccaaggttgatcaaacctccttaaggaaacactgtttaaatctatagttatatgaacttttgtcatgtgactcatttttgttatgttctccttgataaatattgtttagcaactgttgtctaaagtatgataatagttatgtacttagagcgttagacatgaaatgaatatgctgaagtgtataaaatgggttgcaacatttatgatgttcctgacatgattttcacactgtattattcttacccgactgaaattacctaaaaccaggatgctttccttgtgtgaactcagacaattgatccctcacaaacagttggaacaatcatttcttactttctgcttaaactatgaactgtttagcatggaaaacaggtggaaatactgttaaagacttttttttttggttttgctgcaagtttctttgcaccttaatgtgtaactgtaactacatgcaactttctgtggaaacaattaattcttagggactgaggaggaaagttgtttctattgtttgctgttgtttagggacaggaagatagctgtgtttatatccaattaatttcatatgatatatgtagggaaccaattttcaaaagcctttgtgtagtagcacaccaaccataggttgttgcatgagctcatataatgtgttaacggaacttctccacaagtccttagtctttgtttactaactttattgttatggttacagtccagcgcctactgttggaaattcacagtacagtcaaatcctgaaaaataatttatatcatcatttgcttgtcagtcagcttcttaaaatctcttcctgtttatgttatacaggactgcaagaaagttgaaaaggatagtccttactacgatttccagtacaatacaaggcgtgctcgcccatcaattgtacattttcaggtttgtaatcactctgttgacattccaatatctgtagctcagttatgctacggttgatcttatttgaacttgaccagccatgttgtcctttggtactacttggtcatagcagtaaatgataaaccttttcaaaatatctggcttgtagagatcatataggtcctaataggaattgatggaaaagaagttgcaggtagttgttaagagttacaatatatctgtgaaaagttttaccatcaatatagtgaactcccaataattaacattttaatagttatttcggcaagtggcataacttttgctgaaatgacacacaagacaagatatcgaaggaacaactttattttactgttaaaagatggatggactaagtgttgaacgtccaacatgctagatgtgatatcattcttctatacatgcatgcatcaaaatacatcaatttgctacttttatgtcatcaaggaacactagatctactcatagatctcaatataagacagaatagttcctgcatagataaatggatgtggtttctagttctgattttaagttttcagttaaggaatctggtctgggcaacaaccaagcatgatgtttacacggtgcacaaccaatcagtgacacattggtcatcattggaccagacaagtactgagctaatcaatgcggatgactgcattataccaaaacaggtacctactccatccatagccttagctctcattgttgttgactcatcatctcgttggtccctaacttgcaaaattatcttctttgtggacagagagggcatggttcacagtccgttgcaatggtccaggtcacaactatggctgtagatgatagtttattggtaattggtggttttcagggggagcttatatgcaaggtatcttcatagaaaaacatatacttaaactttgcaatttcatctagtaacttgcaaactgacaaaattctttggtttttaatagcgcctggaagatgatggagttcttttcagcacaagagttacagatgatgagaatgctattaccaactctttggagatatatcaggatcccacgtaagacttgttgcttttggagttagcatgtttttacttccaggccttgtaacaactcttaacaaatgtatgttttgatattttcagtggatctagacggttggtggctgctaacaatgactgctctgtcagaatttttgacattgagtactttgatttgctgaagcactatgtcttcccatggtctgtgaatgtaagtagcctctctatacttgtttatccccttggttatgtgccttcttttgtctcccaagtctcagattttagttttcaatcagagcgtttcggtgagcccaaaagggggactgtttgctgtccttggggaccatgaggatggcttggtagtggatcccaagtgtggcaaggtaagtgcatgactattttgacccaatgtgtgaggttgtagcggcttctgattttttttatcttaatctgtaattgcttctcttgctttaggcaatcggtgcacttaagggtcacttggattactctttcgcatctgcctggcatcctgatggcaatatcttggctaccggcagtcaagatacaacctgtcggctgtgggacattagaaacctatcagagtctgtggctgtacttggcggaaggatgggctcgatacgttgcatcaagttctcttcagacgggcggttcttggctactgcagaacctgtggatttcgtccatatctacgattcatatgcagactatggcagatctcacgagattgacttgtttggagagattgctggattgtcattcagcccagacgccgaggccttgtacgttggcatagcagatccaacatacggtggcctcatagagttcaacaggaggcaccaacatcattatttgaactgcatgtggtgatgccatttgttaagcgaaatgtgcgtctttgctgagcttagcagtcctccgattatgtgctgcataacttgcacaacttgtggaaggcgcactaatagtgaaaagctcattaaagaaattttgctgctttagtttttagctgcagcacctgaagctcatgaatggccccgaactgtaaaattctgtcccttttgtctaaaatgtcacttaggaactgatggaggtagatatatatgtatagccgtcctatttcatttttctccaaatcgatgtacatatagttgtggtatcccggttctttgcaacgcaacgagcattggcaacaaaatagcaaggataaattatgccagaagtggatggttcggcacatccggaagaagattttagctcaatgatcatatgtgttccactcggttgttcggctctcgtttatacaagaacagggaatttcccagcagcgaccttttcagtccttgggacacgtagaaattgctagtcggtggctcggagccgttctctctttatcaaaccgaacatgcttggaattctctattatcataattttgcaatatccatttatagatattgaaatcaaagtacgttacatcc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0408200, RefSeq:Os08g0408200