Os08g0430200

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Revision as of 13:01, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0430200| Description = UV excision repair protein Rad23 family protein| Version = NM_001068389.1 GI:115476515 GeneID:4345632| Length = 4634...")
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Gene Name

Os08g0430200

Description

UV excision repair protein Rad23 family protein

Version

NM_001068389.1 GI:115476515 GeneID:4345632

Length

4634 bp

Definition

Oryza sativa Japonica Group Os08g0430200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:20885027..20889660

Sequence Coding Region

20885090..20885155,20886399..20886560,20886763..20886813,20887343..20887407,20887632..20887706
,20887850..20888027,20888418..20888600,20888683..20888796,20888874..20888983
,20889073..20889151,20889282..20889419

Expression

GEO Profiles:Os08g0430200

Genome Context

<gbrowseImage1> name=NC_008401:20885027..20889660 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:20885027..20889660 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaaggtctccatcaaaacgctcaagggctccagcttcgagatcgacgtcgagcccaccagcaaggtcagtgatgttaaaaagctcatcgaggttacgcaaggagataatgtctaccccgctgatcagcaaatgctgatccatcaagggaatgtccttaaaaacgacacaacacttgaagagaacaaagttgttgagaacaacttcattgtgataatgttatctaagaagggatcatcaagtgctgcttcaagtacagctaaggagcccacaaaacagccctcagttgaccgggcgatacccactgcgcctgcaacccaaccacctgctccaccagcacctgttagcgagcctgtgactgcaccagttccaactgcaacaactgcttcagctccagcagctgctgtcaccgctgcatccaccgaagcagataattatggtcaagctgcgtcgaaccttgttgctggaagcaatttagaagggactgttcagtcaattcttgaaatgggtggaggagcttgggaccgtgacactgttatgcgtgctctgcgagctgcatacaacaatccagaacgggctgtggagtatttgtacaccggggttcctgagcaagctgaggcccctgctgcagttcaagcacttcctgtccctgctgcagttcaagcacttcctgtccctgctgcagttcaaccagttgacccaagccaggctccccaatcagctcaactttcaattccatcatctggacccaatgccaatccattggacctgtttcctcaggtccttccaaatgcttctgcaaatgctggtggtggaaatcttgatgttctgcgaaacaattcacagttccgtggcttgctttctttggtgcaggctaaccctcaaattctgcagcctttgcttcaagagttggggaaacaaaatccacagattttgcaactgattcaggaaaaccaggctgagttcctgcgcttaatcaacgaacctgcagagggagctgaagggaacttgctagaccagtttgctgcgggaatgcctcaaacagtggctgtcacacctgaggagaacgaagccatacaacgtctggaacaaatggggtttgatcgcgatctggtcctggaggtattcttcgcgtgcaacaaggatgagctgttggccgcaaactatctcttggaccacatgaacgagttcgacgacgacgcccctgaaccaccgcaataa</cdnaseq>

Protein Sequence

<aaseq>MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQ MLIHQGNVLKNDTTLEENKVVENNFIVIMLSKKGSSSAASSTAKEPTKQPSVDRAIPT APATQPPAPPAPVSEPVTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLE GTVQSILEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPA AVQALPVPAAVQPVDPSQAPQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGNLDV LRNNSQFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAE GNLLDQFAAGMPQTVAVTPEENEAIQRLEQMGFDRDLVLEVFFACNKDELLAANYLLD HMNEFDDDAPEPPQ</aaseq>

Gene Sequence

<dnaseqindica>64..129#1373..1534#1737..1787#2317..2381#2606..2680#2824..3001#3392..3574#3657..3770#3848..3957#4047..4125#4256..4393#ctttccccttctccgctcctcctccccctcgcgagctcggcggcgggcggcggcggcggcgcgatgaaggtctccatcaaaacgctcaagggctccagcttcgagatcgacgtcgagcccaccagcaaggtacgccgcggcggcctcccccctcccctcctctgatctgtgatgtgatgccctgtgtgtgtgaatctaccccgtcgccgcggcggcggcgggtttgcagatggtgggggtgtttggatggatcgggttggtctagagcgccacgggggttagcagcagcgtggatgcagtggggggcggggatggggctctagggttgcgggatttgggggtgagggggattggggagtggtaatggagggcggattcatcgtctaggggcgtggcttttgtgctggttaggtaggtggggctctgttcgtcgccgctgcgagttgggggagctgctattgagtattgagtgttctggtgtagtatatgatggttggaagcaatattaggttttgttatggctttgtatgtatgcgtgtatctgcttgatgatgtattgattagcgtagtccgcgattcagtaccgtgtctttatcttccatcgcttttattgatattattgcatactggagcttggttgctatgtgttcagcttgttgtgagcggatcgcgggattacggatatatctttatataggtgtgtgtgcacgagtaagctgtatttaatgaccgttggaacaggcaggccatgaatttgtacttatacgcgctggtatcgttgtgttattatggctcgtgtgatgaggactgtttcttccagtaatgttatatatatgactagaccatggaacgataactgtagcgtcattatgcaatatttgtttgaatctaagatttggactagggatagccactctagcaaagctcttaaacctttgatcatagcgcttaggctcttcagcacataacttaatacggtatgttttctcattcgttttctatattgttttgatgatcaaagggaggacaatttctgtttatgcatatagttccaactagtttggaatatatattaacgtgtgataaatgctgcttagttattccacatgagtatgtacacatagtaactattgtaaaaattgcccatcagttaccattaactatggtcaggtggttttactggagtgatgttaacggttagtcggttacgttacaatccatgattggaatcttaatatgtagtactcattactgcactttttcatgactcgcctccccagatacatcaaagcaatgttttcttgccacgtgaacaccatattaaattgattaatacaaatacattctgtttgactatgattgttttatgcaggtcagtgatgttaaaaagctcatcgaggttacgcaaggagataatgtctaccccgctgatcagcaaatgctgatccatcaagggaatgtccttaaaaacgacacaacacttgaagagaacaaagttgttgagaacaacttcattgtgataatgttatctaaggtgcgttaaatttttatcattattatagtagagagcttaatgctatctaaggtgcctcagtatgcaacatatttgtgaaatagcacaaatatgggtcatgcctcgttatgaacgtatgatgcaaatattttcctttcaggattttgtgatttatctatgctataatttttattaaatagaacttggacaattctatttgcagaagggatcatcaagtgctgcttcaagtacagctaaggagcccacaaaacaggtgcggtagaatagccatgtttcattatatcattgaatctgtttctcagtattatttttcccatttttttaattagtgttctatgtggtttcttagaatatcactgatcaataaagtaaatgtgctaagtcttattcaactgatctggaaattttattgactcactcaagaggaaatctgctctgtcctatatatttaaggagaactaccattgacaattcaagatttctacttgttgtatacctgatatgagattgtactatttcttttatacgcttttcctgtaaggtttttggtttaataatatcatctcctggatacatgatgcccatccaagtatatgatttaaggagaactaccattgacaattcaagatttctacatgttgtatacctgatatgagattgtactatttcttttatatgcttatggttgttggcttgtagaattgttattctctttttgtaatttgacactgaactcaaaatttcgcttgttgtacaatcaaattaatatgtatgtcttgcagccctcagttgaccgggcgatacccactgcgcctgcaacccaaccacctgctccaccagcacctgtgtaagtatccacccatattggcctgactgaaatcattgagcacttatgtgctcaaggatccatttttctcagtccttaaattgtctttctttaacaataactgtagttagtaactaatgttctcttggccattatatccatcatggtgatatttaggtccacatcttaatttgcaaattgagttcttttgttgccacctaattgcaacgttttgcttttcccagtagcgagcctgtgactgcaccagttccaactgcaacaactgcttcagctccagcagctgctgtcaccgctgcatcgtgagttgttacatgtttcctttgaatttaagaatctgatcaatcaccctcttttgcttttgttcctttgtttggcattgttttatttggcaagatatgaaaggccactttgacaatactatctgataatttgattttaccagcaccgaagcagataattatggtcaagctgcgtcgaaccttgttgctggaagcaatttagaagggactgttcagtcaattcttgaaatgggtggaggagcttgggaccgtgacactgttatgcgtgctctgcgagctgcatacaacaatccagaacgggctgtggagtatttgtacaccgtaagaatcatttctgcttacctcccatgttttccgtgtcttgttgcttggacttcctgacgtgctattatgtcgtcaaaacttttaaaacaaatagggagtctcaaaatattaaactaatagaaagatgttgttaatctgtgttatttaagtttttgcaatgccttgttgaaaataataaataaacagatcaaaaaacaattttaacgacataggcactttcttgtcatgcatgctttggtatgtgcccttgggcaacaggaaaccacttatttcaaacaatggttgcacccttttctctcctttgaacttatttctgccacttctgctgcttttcgggcacaattttatcatgtgactaatctattgcactttgtgtatttgatatagggggttcctgagcaagctgaggcccctgctgcagttcaagcacttcctgtccctgctgcagttcaagcacttcctgtccctgctgcagttcaaccagttgacccaagccaggctccccaatcagctcaactttcaattccatcatctggacccaatgccaatccattggacctgtttcctcaggttctgcctccacaactcacacaaccacatacacacgcacacaaaaagtactagttctgaattctttcaatttttttttcaggtccttccaaatgcttctgcaaatgctggtggtggaaatcttgatgttctgcgaaacaattcacagttccgtggcttgctttctttggtgcaggctaaccctcaaattctgcaggttactttttcatctttttcttctagttgttgtactctatacgacatatgcactgatgtacaaattctggcatgcagcctttgcttcaagagttggggaaacaaaatccacagattttgcaactgattcaggaaaaccaggctgagttcctgcgcttaatcaacgaacctgcagagggagctgaagggtatgcattgcaagtttgccactagtgatgtcagtatttgtatatttcaacattcgtttttgtgcttgacgcttgataccgtaaaccaggaacttgctagaccagtttgctgcgggaatgcctcaaacagtggctgtcacacctgaggagaacgaagccatacaacgtgtaagcactatatgtgttcttctgcagtaccacaaaaccgagccacttgtttcatgccatcttgttgcttttatccacgttttttgcacctgcaagttgtaacatcacgtcactttgttcttttgtgcagctggaacaaatggggtttgatcgcgatctggtcctggaggtattcttcgcgtgcaacaaggatgagctgttggccgcaaactatctcttggaccacatgaacgagttcgacgacgacgcccctgaaccaccgcaataagatgactgacccgtttttaatgatacatgccagtcacacaagagacattgggttgcaaacagtggtcaccaagactggtgattatccccgttttagaacatccaaatccacccatccatccaggcgtgagaaaaatgtttttgagcttctctcatcatcattcttttttctgctttgggatttttatgatgattagtacatactctagatgacatttacagactacatataaccaaatgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0430200, RefSeq:Os08g0430200