Os08g0513300

From RiceWiki
Revision as of 13:07, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0513300| Description = Helix-hairpin-helix motif, class 2 domain containing protein| Version = NM_001068760.1 GI:115477257 GeneID:4346021| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0513300

Description

Helix-hairpin-helix motif, class 2 domain containing protein

Version

NM_001068760.1 GI:115477257 GeneID:4346021

Length

5550 bp

Definition

Oryza sativa Japonica Group Os08g0513300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:25532521..25538070

Sequence Coding Region

25532587..25532749,25533230..25533628,25536445..25536862,25537600..25537789

Expression

GEO Profiles:Os08g0513300

Genome Context

<gbrowseImage1> name=NC_008401:25532521..25538070 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:25532521..25538070 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaggcgcttggtgacgcacctccaccgcctctcccaccgcgccatcccttccccgcctccatctcgacccccaaccaccactagcctccccttcctcctctcccgccgcctcctctccgacgacgccgcgcctccgcccgccgccgacgtcccaaacaaagagctgaagcggcggttggaaacttactatggggtggacgatgaggcagaactaccatctgtcacagaggctgttcttgagcggaagcttgcggatgtgcacagcgagacggacgatgaacttatcgaggagctgcgcagcaaaccactccctgaggttcgtgacagggattttgagtccgactttgaggagatgcacgatactgatgaggagctggacaacttgtacaacgccagacagtatgtggagaaaaagatcaagagtgacgagttctttaatatggatgacgacaagtggaataagatgatcaagaaggctgtggataatggccacctcggtaatatgaacgaatgtgagaatattttggaggacatgctccactgggacaaactattacctgatgaaattaaaaagaaggtggaggccaaatttaatgagttgggggacatgtgtgagaagggagagcttgaacctgagcaggcttatgaattattcaaagagtttgaggataagatggtttcagagtgcacagaactaatggaagctgagaacccaactgacgtggatgaattttctaaaatggaaaataagagtgttaagttggacgatccacctggtgagggacctgttctaaggtgggagtcacgtattgtctttgctcctggaggtgatgcatggcatcccaaaaacaggaaagttaaactcagtgtgactgtcaaagagctgggactttcacgacatgccttccgacgtttacgtgaggttgttgggaataggtacaattctggaaaagatgaactcacaataactagtgaaaggtttgagcatcgggaagagaacaggaaagattgcttgaggacattgtatgctgtagtagaagatgcaaacaaggccaataagttggctgatgatgctagaaatgcatatgttaaaaacagacttaaggccaatgctcaattcatggaaaggttgaaggtgaagacacagaaattgagggtagctgcataa</cdnaseq>

Protein Sequence

<aaseq>MRRLVTHLHRLSHRAIPSPPPSRPPTTTSLPFLLSRRLLSDDAA PPPAADVPNKELKRRLETYYGVDDEAELPSVTEAVLERKLADVHSETDDELIEELRSK PLPEVRDRDFESDFEEMHDTDEELDNLYNARQYVEKKIKSDEFFNMDDDKWNKMIKKA VDNGHLGNMNECENILEDMLHWDKLLPDEIKKKVEAKFNELGDMCEKGELEPEQAYEL FKEFEDKMVSECTELMEAENPTDVDEFSKMENKSVKLDDPPGEGPVLRWESRIVFAPG GDAWHPKNRKVKLSVTVKELGLSRHAFRRLREVVGNRYNSGKDELTITSERFEHREEN RKDCLRTLYAVVEDANKANKLADDARNAYVKNRLKANAQFMERLKVKTQKLRVAA</aaseq>

Gene Sequence

<dnaseqindica>67..229#710..1108#3925..4342#5080..5269#ggtaaccctaaacccccttcctctcttccggcgcctgggcgctcttcccccctcttccccgccgcaatgaggcgcttggtgacgcacctccaccgcctctcccaccgcgccatcccttccccgcctccatctcgacccccaaccaccactagcctccccttcctcctctcccgccgcctcctctccgacgacgccgcgcctccgcccgccgccgacgtcccaaacaaaggtaccttctctcgtctccaaccatctgctcggcgaaatgccaatgagctgttaacaacattcccttgcttgcacctgtcggaattggtccccctgttgatgatgagatcggagtctgcacctgctcggtttaatgcctccctgctggatgcttcctcgcttcctaagcaaagatagtcttgttgggagtctagcgtggcttgccccttccggctgcttgaagtctgtttttagccaccgtagtttctctaagcttcagttttttttcatttgctttttctcccttcccatagcctaaacgggtctggctgattgcgtcgtgtaatcttctaatatattgacgtgcaatctttttgcatgttcgcaaaaaaaaaagagcaaagatagtctcgcgtggttcttcatcttcctatgccgtaatattaattgtggcacggaaatggcctgtttgatttgtccatgacgataactctgactgcagagctgaagcggcggttggaaacttactatggggtggacgatgaggcagaactaccatctgtcacagaggctgttcttgagcggaagcttgcggatgtgcacagcgagacggacgatgaacttatcgaggagctgcgcagcaaaccactccctgaggttcgtgacagggattttgagtccgactttgaggagatgcacgatactgatgaggagctggacaacttgtacaacgccagacagtatgtggagaaaaagatcaagagtgacgagttctttaatatggatgacgacaagtggaataagatgatcaagaaggctgtggataatggccacctcggtaatatgaacgaatgtgagaatattttggaggacatgctccactgggacaaactattacctggtcagtcatatctgtctcccaccctcactcttttctcttgtgaataggtgtgaagtaaaacttttctccaaacacaattctttatttgctccactaaaagtagctaggacacttggtttgatactgtgactgttagtttatttatttttggtttaccttgtcatctgtatcaactcattgtggttgaaatatttccttaatttagggagaatttagattaacttattggattataactgtttaatggtattcttgtaaatatacctctggttattaatctaatcacaggagcctctcctgctgttttttcgtcgaaaaaaaaactgtttaatggtattcaaagtaagttttaaggttggttgtcacaaatcagtgaaattacaatgcccaggtagtcatggcaacttgggatggtattttatactacggtagattatggtctacaatctgggaaatatccaatttcctctcatctttctactatatgttatgctgtggagggttggatgcaagctcttgtttgctgggatgtcgtattcctttctacctggttattcatggccagcaagtttgggttcttgtgctgtgatgggatgttttagttcaagaaatgggttagtcctaagaagaaatcattcctttcctttggatggaatagtgaaatatttatgaccagaagggcagtatgagtaatggctatccattacaaattatgttgtctagccatgttttccatggttgtcttgttctttttactctaaacatacctaaagtgtcctttaaagtggatttgtcatgccaaaaagcttggttttttgccaccaaacgtttggccattccacttccaaatgttctacataccaatactgaaattttcaacgctaccaactcactgctcatgcttttgttcagtttgtgcaatggacttagctggtgtgttactacctcatctctagtgagtacaaaggtagtagaaaaaagtggattaggaccatccctacagaattacaggatcatcccataaaatatcctaggatggggtgatccattacaccccttagatcaattggttagcaagtgattgactttacatatagaccactctttatgcaagtagcacatgctagtgtattcagtctagtggattgttcaggatagaagctatgagcataagcacccattctgaacctatctaaagtgtgtatgttgaaccgtagcgtgtctagcttttacatcaattctcaactatatctgactggcttcctcttagtaccagcacatgattacctgcaacaatatagatataaaggccttgtgagttacgagttcccttcatttctaggaatgaacatagctgcccagttggttttagcacttttttcttgaacaaaaatgcaagcatatgttcattcctgcgccattattggagctgtcatcagaagctttcaaggactccatgacttggtgtgtatactgtagagttggacctctttagactcacggtgcatatccaagagtggggttttctgggcattttcagcttacaaagatactgactagaatgccatctcattagaaaaggtgggtttgagatgggaatctgtagattgcaaaacctgtagaatattgctgcagtcctatgctagggggcaaaactcaacctcttggttgaagtcataatgaaaacccaagaaattgttgcgtccctgggatttctattttttaaaaaacttttgctgaatcagttacctggacattggccttctctatggaccacttttcctgtttaagcaacagaagtctccatactaggtgaatctttttgtttacatgtactatgtatcggccattccttattcctgcatgtgattatgtgaaaagaccatgcaacatttatacataaagttaatgatacttaggacatgtttggtgactgttatctgcatgagaaaaagtaatgcctgaaggtagcctgacagtggtgaagccaggatttaggcatgaggggggccaacttgataagtgatcatgattaaaaaaagagtaaaaaatatacgtgaatttgaaggttccccaaatgtaatatatcatatcaacataaaaagacagaagttcaaaagagactgcatatatttatttattttaatttagccttttgagcagttagatcataagcagtgataaaatcattcgatctaaaagtctagacaaacagaaaaagacacaaaagctagattatggcaaaatgagtgacaactatctatcttttccaactattaactactactatttagctagattatgcaaaatgagtgccaggtctcccgccgcccccctggattcacagtgtggtttcgatatcttgaatcgtttgcggcattggttgataatatgcctaagttgtactccaccccagcacaataaatagagggaaaaaaatgttgatcttgccacaaacacccaactacatggccaatttgtaggcggttattgcgaccaatttgtcccacttattcgtgccatccaggctgtggtagaacatctaagttaaacataacacgttatctaagcagccctgtggaaccagtcttgtgtttaactaaacagtactgattgttcaaggaactaggaggtttcaaacttggctcttgcatatggacctgttgttctactcttcaattcatgcatggttcagtaatcttattgtaatgttgtattactaataactgttgtatagctaggggcctttgttcctttttccctgcacttcttttatcatattttattgtattttttaaacactatattttgtccagatgaaattaaaaagaaggtggaggccaaatttaatgagttgggggacatgtgtgagaagggagagcttgaacctgagcaggcttatgaattattcaaagagtttgaggataagatggtttcagagtgcacagaactaatggaagctgagaacccaactgacgtggatgaattttctaaaatggaaaataagagtgttaagttggacgatccacctggtgagggacctgttctaaggtgggagtcacgtattgtctttgctcctggaggtgatgcatggcatcccaaaaacaggaaagttaaactcagtgtgactgtcaaagagctgggactttcacgacatgccttccgacgtttacgtgaggttgttgggaataggtacaattctggaaaagatgaactcacaataactagtgaaaggtatgatagatttcctgcttgcagcttttgtatattatgctaatttaattgtgcggtatatcacatacagcaatgttgttgacaaattgagctatatcccgagtcaaggtgttgaactatacataatgtcaggacggagtttacaaatttactttctgttatcaaatgcaaaacaggcaaatagaggagtataaattctcgtaaattgtatagttctatttcctttttttgttgaaaatattctagttctggaaccttatgtttcctggttgctgggtagatacatggatttgtgtttgttatacatgcatgcccatattacacaggagaaatatggggaattcggcagactttgcatctgctgtatatttggtagttaggtttctttaaagttgccaacttaattattcaagcttcttattgagttgtgcttgttgcttgggaaatgtccgaaggtatgttgggttctgatagaatcttactatgctgtagtgttttttagtattatagtaataatagcattctttcttgagatgccttttgtctcaatgatctaagcaaaggtggtgaaccactattactggcaggatgtgtgattttattgtgtcatgtatttgtttggcttttatacatattgatgacattgagccgttttgttcttcagagtgctatgatcttaccatcagcatatagtggcactgtagaaattgttgataagtatttgattaataccgcaggtttgagcatcgggaagagaacaggaaagattgcttgaggacattgtatgctgtagtagaagatgcaaacaaggccaataagttggctgatgatgctagaaatgcatatgttaaaaacagacttaaggccaatgctcaattcatggaaaggttgaaggtgaagacacagaaattgagggtagctgcataaggggctcctggagctacacgctctggaacaattcctctttcatgatatcagtacggtcattttgcaacaaaggatgcggcagtgagacgtagaacgggagcaaaaatgttttgttgtaatttacatgtgttgccttgtttggacggcctgttaggtttatctttagctgaagctacactttttgaatttaccgtgaccgagcaggcctgtttacatgatcgcatagtgaactggctgtatcctgatcttctctacaaataacaaattgcttctgaaaactc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0513300, RefSeq:Os08g0513300