Os08g0540100

From RiceWiki
Revision as of 13:10, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0540100| Description = Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase)| Version = NM_001068916.1 GI:115477570 GeneID:4346185| L...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0540100

Description

Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase)

Version

NM_001068916.1 GI:115477570 GeneID:4346185

Length

3849 bp

Definition

Oryza sativa Japonica Group Os08g0540100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:27122943..27126791

Sequence Coding Region

27123034..27123246,27124592..27124771,27124947..27125053,27125403..27125608,27125996..27126135
,27126285..27126584

Expression

GEO Profiles:Os08g0540100

Genome Context

<gbrowseImage1> name=NC_008401:27122943..27126791 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:27122943..27126791 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatgctgctcgcccgcgccgtcctccgctcccgcctccgctgcccgccgctgtctgctgcggcggcgtcgacggcggcgttctcgtcggccccgtcgccggcggcggcggaggcggagcgcgcggtacgggacgggcccaggaacgactggagccggcccgagatccaggccgtctacgactcccctctcctcgacctcctcttccacggggctcaagtccatagaagtgtccataaattcagagaagtgcaacagtgcactcttctttcaataaagacaggtgggtgcagcgaagattgttcatactgcccccagtcctcaagatacagtacaggattgaaggcacaaaaattaatgaataaagatgctgtcttagaagcagcaaaaaaggcaaaggaggctgggagcacccgcttttgcatgggagcagcatggagagaaaccattgggaggaaaacaaattttaatcagatccttgaatatgtcaaggacattagaggtatgggcatggaggtctgttgcactcttggcatgctagagaagcaacaagctgaagaactcaagaaggctgggcttacagcatataatcataatttagatacatcaagagaatattaccccaacattatttccacaagatcatatgacgatagactgcagactcttgagcatgtccgtgaagctggaataagcatatgctcaggtggaattattggtcttggagaggcagaggaggaccgtgtaggattgttgcatacactggctactttgcctgcacacccagagagtgttcctattaatgcattggttgctgtcaaaggcacgccccttcaagatcagaagcctgtagagatctgggaaatgatccgcatgattgccacagctcgaattgtgatgccgaaggcaatggtgaggctttcagcaggacgagtacgtttctccatgccagagcaagcgctctgcttcctagctggggccaactccatcttcgctggtgagaaacttctaacaaccacaaacaacgactttgatgcagaccaggcgatgttcaagatccttggtctgattcccaaggctccaagctttggtgatgaagcaccagctgcagacactgagagatgtgaggaagctgcatcaatgtag</cdnaseq>

Protein Sequence

<aaseq>MMLLARAVLRSRLRCPPLSAAAASTAAFSSAPSPAAAEAERAVR DGPRNDWSRPEIQAVYDSPLLDLLFHGAQVHRSVHKFREVQQCTLLSIKTGGCSEDCS YCPQSSRYSTGLKAQKLMNKDAVLEAAKKAKEAGSTRFCMGAAWRETIGRKTNFNQIL EYVKDIRGMGMEVCCTLGMLEKQQAEELKKAGLTAYNHNLDTSREYYPNIISTRSYDD RLQTLEHVREAGISICSGGIIGLGEAEEDRVGLLHTLATLPAHPESVPINALVAVKGT PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFAGE KLLTTTNNDFDADQAMFKILGLIPKAPSFGDEAPAADTERCEEAASM</aaseq>

Gene Sequence

<dnaseqindica>92..304#1650..1829#2005..2111#2461..2666#3054..3193#3343..3642#tgagctctcacaagtctcaagtaggagtagaaaactcctcggccgtatcgcctaactacaccaccccatcttctactgctcgctccccgccatgatgctgctcgcccgcgccgtcctccgctcccgcctccgctgcccgccgctgtctgctgcggcggcgtcgacggcggcgttctcgtcggccccgtcgccggcggcggcggaggcggagcgcgcggtacgggacgggcccaggaacgactggagccggcccgagatccaggccgtctacgactcccctctcctcgacctcctcttccacggggtacccatcccaatctctcctctctcttttttttttttttgttctgtctgtgtatgtgtgctcgcttgattggtaatctttttttattatttacggccttcgacttcaatctgtagttattccttgccgttagggaagtttattattaggagtgtgagagagtagatgaggagcaacgaatgcgatgcctttctttgtttctagatgtgcttgagaaatgctccctttttgctagtgaaaaagaatgggagaagaatgaattggtgggcttcctgtagtagcagccgggggaatagtgatgccaagataaacttttttactttgtggatcctggttcacggtggatgtagttctcgataaacatcctttttttggtggcatctgggatgatgagtagtggatacttctcttctttttttttttttttttacttttagtcaaatatctaatattatggctatagcatcaggtagactcgcgtccatgtccagctagcactgcctggaattagtagtaagatgatactaatctgtcaccgaagttctgatacatgatagtgattagcatcttatgacatactagagccttttagtagtgggactaccaattattcacaccaaacttagtgcggattttgtacttggtgttgggtgagatttgccacttaggatcgctgaactgtgggaagtgatgattgacgcaaagcataatgctaagcaccaactggaaaggctttaacattcaggggatattatttgtttactgttgttatagcaggtgctagctttttcgttatgtacaatcactagtgcttaaatttgtgtgtttgttccggaaaaaacttgaaatgatgtgtactatccctatgctatcaagaaattacaatgtgctcatatggatttgaggctaagcttttgcttggtcaagctctagtattaataggaagtaatgccctcaagggcatttataatctggaaattggtgctaaggatttcccatataggggcttcagacaattcggacttgatattgcaaatttagcttgagtaatgaatggcccatatcaaacatgtttggtcacaacaatctgcaacgatctgactggcttgatgcacgatagcttgtcagcattcattcaaatgcatatcttagtcgcattattagcttagtgcatctctgttggttatatgttgaacatatttcccaagcttttcgttgatcattttagtcaaagcctcaaaggggaaggaaaactattgtccagccttcacattagtcaatagggaaatagctctcaattgcaatgtattttcatttaaccagataatgcttgcattttctataggctcaagtccatagaagtgtccataaattcagagaagtgcaacagtgcactcttctttcaataaagacaggtgggtgcagcgaagattgttcatactgcccccagtcctcaagatacagtacaggattgaaggcacaaaaattaatgaataaagatgctgtcttagaagcagcaaaaaaggtactgtttttgtaactttatctcaaggtgaccaagttcatttatgttgttgtttttaaaaatcttgcgaagtggtaacatgagttcttacagactgaggacttcagctttagttcagaaaattatgggttgtaatatcatttcacattatttcttctgatctatttccgctcaggcaaaggaggctgggagcacccgcttttgcatgggagcagcatggagagaaaccattgggaggaaaacaaattttaatcagatccttgaatatgtcaaggacattaggtattatttttgaaagatagcacaatagaattattgtgtgcaagtatttggcagagtcttgcataaccatgcactgatgcgcatgctctcttccatgccattgctatgtcatcattagtttattcgtctgtttttttgtatttccaaacatattagtattgtcaatcttgaatgtaaaaattaaactattctttgcctgttcacttacaaacagacgtaatcttgagccatataggacactgacttaagcctctgcatacattacgatagaatatttgcatgaaggtagttttcttgctttatcactatcttgacttcgatttaccattctgtggataaatctctgcagaggtatgggcatggaggtctgttgcactcttggcatgctagagaagcaacaagctgaagaactcaagaaggctgggcttacagcatataatcataatttagatacatcaagagaatattaccccaacattatttccacaagatcatatgacgatagactgcagactcttgagcatgtccgtgaagctggaataagcatatgctcaggtgaatatcagtgttacaggcattcctctcgtactacaaattcagggtaaatgcatgtttatctttgtcgtgtgtatgtaacgggcataattgggctgagggacattagtccttgttgaggtttcctggacctagccatggtggcaccagggagggagagaataaggactactccttacaaacttttctccaagatccagcaaatagctaacaaatcgatataatcttatctccaatctgaacaaccactatggatagtaaccatgcgggtactgttgatgtgcaatttcactggccctagggaggctgactgctgcttgtatatgggccctaatgggcacttaatgacttcaatgtataacctgaagcgccatgctctgtgtgcaggtggaattattggtcttggagaggcagaggaggaccgtgtaggattgttgcatacactggctactttgcctgcacacccagagagtgttcctattaatgcattggttgctgtcaaaggcacgccccttcaagatcagaaggtattccgcgctgctgattagttgttctaggttggatatttgcatctagcatcaggatatataaactgtgcagactataataagctttggtataagattatatgttgtgatttctgtatccattatctctaattaacattcaacttcagcctgtagagatctgggaaatgatccgcatgattgccacagctcgaattgtgatgccgaaggcaatggtgaggctttcagcaggacgagtacgtttctccatgccagagcaagcgctctgcttcctagctggggccaactccatcttcgctggtgagaaacttctaacaaccacaaacaacgactttgatgcagaccaggcgatgttcaagatccttggtctgattcccaaggctccaagctttggtgatgaagcaccagctgcagacactgagagatgtgaggaagctgcatcaatgtagaacaccaatagaaactcttgagaacacgttcggtgcaaaagtagcaccattatttccggttagcgcattgtattgtagagattacaatatcttgtagtaagttagaaaaagatcgacccaaataaatagggaattttctgtatcattgttcttgttgtgccattttgtgacatttcaatcagcttcaatctcagttttcctttttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0540100, RefSeq:Os08g0540100