Os08g0556000

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Revision as of 13:12, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0556000| Description = Similar to YTH domain protein 2 (High-glucose-regulated protein 8) (NY-REN-2 antigen) (CLL-associated antigen KW-14)| ...")
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Gene Name

Os08g0556000

Description

Similar to YTH domain protein 2 (High-glucose-regulated protein 8) (NY-REN-2 antigen) (CLL-associated antigen KW-14)

Version

NM_001069007.1 GI:115477752 GeneID:4346283

Length

5259 bp

Definition

Oryza sativa Japonica Group Os08g0556000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:27913040..27918298

Sequence Coding Region

27913518..27913865,27913990..27914202,27914326..27914844,27915486..27915604,27915704..27916010
,27916087..27916169,27916274..27916451,27916575..27916648,27917971..27918004

Expression

GEO Profiles:Os08g0556000

Genome Context

<gbrowseImage1> name=NC_008401:27913040..27918298 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:27913040..27918298 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaatcggcgcacggcggatcggatcgcccaggctcaatggattcgcaggagccaagagttgatgctgaacaaaaacctgttctttctgataaccctgaagagcagaccattcctagcaaagatgagaaggtccttgaacccaccatttcacacgattcaaatggtatcaatctaccaagtgaaggacaagcccaagctggcacttccaatataggtgggggacacaatgctgcatatcctcaaaccatgtattcttctcaggcacagccattctattaccaaggtccaggatatgataacccttcaaatgaatgggatggatatcctccttatgtgagtgttgaaggcttggaagcaggtccagcggttgtatacaatgatgatcctcaattgatgtaccatggtggctatggctatgacccttatgctcattattctcctatctcaacgcctgtaccggctgctgttagtggagatggtcagctctactctcctcagcagttctccttctcggctccttactaccagcaatcagtaccacctggcatgccatatttaagctctcctactccaatatcacagggtgaggcaatggtgccgattgacccaacacaaggggcttttatcgccgaaactctgagtcctaacagcttccttttcggaccaagacctgaatggttccgatcgtctgaaggaaatgggtcgtttccatcacctgcggcttcacctcaacctgctggtggcgtttcagggccctttggacaaagcaacttccctatggcttctggaatgcaatctcctcagcacaggcccttctatggttttgggacaccaagtgactcttacggaagagtgttctctcatggtggatatttcccacaggccactaattatgggggccctttccctagctttggcctgaatggtacgagttctattccgatggaaaaaggccgcaggagaggaaggggcaatgctcttctttgcagctgcaatggttcacttgacttcctcaatgagcaaagccgaggcccacgtgccactaggcctaagaagcaaccagaggatggcggcaaggatgagaagccttctgcaggcgttgattgcgagttgtacaacaggcctgactttgttacagagtacaagaatgccagatttttcatcataaaatcatacagcgaagacaatgtgcacaagagcatcaaatatggtgtttgggctagcaccacaaacgggaacaagaaactagactcagcctaccgtgaagcaaaggagaaagaagagcattgcccaatttttctgctgttttcggtgaatgctagtgcacaattctgtggtgttgcagagatgattgggccagtggattttgagaagagtgttgactattggcagcaagataagtggactggccagttccctgttaagtggcacattgtgaaggatgttccaaataatcttttccgccatataattcttgaaaacaatgataataaacctgtgaccaacagccgggacacacaagaggtaaaactcgaacaaggtatggagatgctgaaaatcttcaaggatcatgaggaggatgcatcgatactcgatgactttgacttctacgaggagcgtgagagagccctgctggacaataaggcgcggctgcatcagcaacatcagctgcccagctctactgtggttgagcccaagaagcccttgactgtggccactgatctagttggtcatataactaagagctttgcgcaggcagttcggcttggtgaggccaagaatgtgagccctaattcagctgacaaaggtgccagtggggattcatctgtcgctgcaaagcctttggaagttaaagaggccggcttagcataa</cdnaseq>

Protein Sequence

<aaseq>MESAHGGSDRPGSMDSQEPRVDAEQKPVLSDNPEEQTIPSKDEK VLEPTISHDSNGINLPSEGQAQAGTSNIGGGHNAAYPQTMYSSQAQPFYYQGPGYDNP SNEWDGYPPYVSVEGLEAGPAVVYNDDPQLMYHGGYGYDPYAHYSPISTPVPAAVSGD GQLYSPQQFSFSAPYYQQSVPPGMPYLSSPTPISQGEAMVPIDPTQGAFIAETLSPNS FLFGPRPEWFRSSEGNGSFPSPAASPQPAGGVSGPFGQSNFPMASGMQSPQHRPFYGF GTPSDSYGRVFSHGGYFPQATNYGGPFPSFGLNGTSSIPMEKGRRRGRGNALLCSCNG SLDFLNEQSRGPRATRPKKQPEDGGKDEKPSAGVDCELYNRPDFVTEYKNARFFIIKS YSEDNVHKSIKYGVWASTTNGNKKLDSAYREAKEKEEHCPIFLLFSVNASAQFCGVAE MIGPVDFEKSVDYWQQDKWTGQFPVKWHIVKDVPNNLFRHIILENNDNKPVTNSRDTQ EVKLEQGMEMLKIFKDHEEDASILDDFDFYEERERALLDNKARLHQQHQLPSSTVVEP KKPLTVATDLVGHITKSFAQAVRLGEAKNVSPNSADKGASGDSSVAAKPLEVKEAGLA </aaseq>

Gene Sequence

<dnaseqindica>4434..4781#4097..4309#3455..3973#2695..2813#2289..2595#2130..2212#1848..2025#1651..1724#295..328#attaatatataataaaagaagatcgaagcgaagcgcacctctctcctcttcttcttcaattgatcaggttgagagggacgacaacatcagatcacgagccacgcaatcgcaatcgcagaggggagagagagaagagggatcgaatcgaatccagtcgaggaggaggagggcccctcgggccgatccgatcgagaggaggagggatccgagctgaacgattcaacccaaggctcgcgggatttggcgcgagttgagccataccgatccctctgccttccgacggacggatccctgatggaatcggcgcacggcggatcggatcgcccaggttagcgcggggattttttttttcgtctctgtttcgatttttggctggatggttgggtttggggttgctcttcgatctggggttgcatcggtgcgattgttttttggttgattcttgctgggttcgggatgttccccttgctagatcttgctgccaagtgcgtcggatcttggcgcaagctgtctgcgtcgcttaattatgacaattcatagatagtatacgtgattaatttttccctgatgccatccatgtcatagactcatagtggtgccgttggaattattgagtgaattagtggattattaagattagatttcagggattcgggcagcgaagacctgctcaagcatcgacattgccgtcttcttttctcctcttcgcgtccgtgaataatggcaggtggtgtggactattgttggttcgcgtgcaggtttagcaatgtgcgattttgtcggttgggtaagatgccgctttcagatggaaatcgcatcacgtgttcatggtttgtacaggcagcaacctgcactaaaattccggcgagccagtatacctgaaaaagatacggacgcaaccaatgcctctagtgtgtctcctgtgagcagcagcagcagctggcgcagggatagtagctgcacgaagggagaaggtagtagtggtaggatgcctgtcagtatcgacaattgcctgtagaggccacaattgtggtttttagtatggttttgactagttgataggacggcagtgaatgatggaaaattgatgcctttattgtgcacggctgcatatgctattggctactatgtggtggagaagtactcccccgaaataagttgattcctaatgtctagattcgtagccagaaattaatacttattttgggacggaggaagtatgtggtactaaagtacactaatttcagtaatttggaatactagtgcccatcagcccatgtatgtgattgtttagaagtgtggctttgttcatgaactgaatgatatggttctatggtacatctaagtaagtacaatggggacttaggcacgtagctgtctttatttggtacttcaggccatttacgatgcttacctttgttgattagtgtgcctcacctttttgtttcgaagtggcagggtataaaatgtattacttattaattcgcctaacaaagaagtgcctaatacagcatgatccttaaaaattactttgcaatacaattttctcttacttttgtgttttttgcgaggaattttctctacatttaattggagtaaatctatgttccttgaatgtttgatttgatctgttcaatctccctcccacaggctcaatggattcgcaggagccaagagttgatgctgaacaaaaacctgttctttctgataaccctgaagagcaggtcattactttatgatatcatttagagatgttctatacaatcttctgattgtcataattgccttttttgtgctgattgttgtagtttttttttgtttgctgaaattgctttttatgaccttagaccattcctagcaaagatgagaaggtccttgaacccaccatttcacacgattcaaatggtatcaatctaccaagtgaaggacaagcccaagctggcacttccaatataggtgggggacacaatgctgcatatcctcaaaccatgtattcttctcaggcacagccattctattaccaaggtcagatcacaaaccatatgttcttctcaggcacactattctctaattgatgaatgttattgttgagtccttgacataattgataatttgtcttttatgagcaggtccaggatatgataacccttcaaatgaatgggatggatatcctccttatgtgagtgttgaaggcttggaagcaggtccagcggtaagcaatctgtttttttggttgccagaagtttttcgtcaagcaccttttctaaaattgttggcttttattgaaggttgtatacaatgatgatcctcaattgatgtaccatggtggctatggctatgacccttatgctcattattctcctatctcaacgcctgtaccggctgctgttagtggagatggtcagctctactctcctcagcagttctccttctcggctccttactaccagcaatcagtaccacctggcatgccatatttaagctctcctactccaatatcacagggtgaggcaatggtgccgattgacccaacacaaggggcttttatcgccgaaactctgagtcctaacagcttccttttcggaccaagacctggttattatctatcttatgccttgttcagctgatactcctaattcaggtttcactttttaggcatgattttaaccttttatctcatgatgataatttcagaatggttccgatcgtctgaaggaaatgggtcgtttccatcacctgcggcttcacctcaacctgctggtggcgtttcagggccctttggacaaagcaacttccctatggcttctggaatggtattctatgcacatgccatctcttgtctatttcttttgtcaaatgaaatagtggttcaccctgttgcgagctactaattgtcataggtgtctggggattaatccattcagtttccaaacaatcttgcctaagtttaattcacataacaataagcttagtagactaataaaaaatgctatgcaatctgcagtgccttttctgattgaaatagatggccgcatattctctcctattctgttttcgtgtgatcttttaggccataattcagttaccataaacatggtcattcttgaatttggatataatatcttctgactagacatgtaatggcaagaatgcctggttagaattctgtaaattcttataatgaatggtcctgattcccgatatggccaagttgcctctagttcaaatgcaaccttaagctttggttttcttcttgccagtgaatttcacagaaatttacttagaattatgaattgcttttcctgataaggacactgtttactatctcaaaatgactactatcacttgtctgataaggacactgtttacttgtcggatatttacaatgacacaggcatatttacttgtatgatctatcttctgacactcttccttttttcccctctaatttcagcaatctcctcagcacaggcccttctatggttttgggacaccaagtgactcttacggaagagtgttctctcatggtggatatttcccacaggccactaattatgggggccctttccctagctttggcctgaatggtacgagttctattccgatggaaaaaggccgcaggagaggaaggggcaatgctcttctttgcagctgcaatggttcacttgacttcctcaatgagcaaagccgaggcccacgtgccactaggcctaagaagcaaccagaggatggcggcaaggatgagaagccttctgcaggcgttgattgcgagttgtacaacaggcctgactttgttacagagtacaagaatgccagatttttcatcataaaatcatacagcgaagacaatgtgcacaagagcatcaaatatggtgtttgggctagcaccacaaacgggaacaagaaactagactcagcctaccgtgaagcaaaggagaaagaagagcattgcccaatttttctgctgttttcggtaattaaagctgtgacctactttcttattgttcctttactgccttcatttttttgttagtggttttgttactttgaatttgttgtttctcttcagagttaacagtttgaatgctatgtacaggtgaatgctagtgcacaattctgtggtgttgcagagatgattgggccagtggattttgagaagagtgttgactattggcagcaagataagtggactggccagttccctgttaagtggcacattgtgaaggatgttccaaataatcttttccgccatataattcttgaaaacaatgataataaacctgtgaccaacagccgggacacacaagaggtacataataacgataataattcttgttttccccttttactttgatatgcatgttgatattacaatgtaatggtttcaaccatttaatctgacacaaatagatgtctgcattatattatattaggtaaaactcgaacaaggtatggagatgctgaaaatcttcaaggatcatgaggaggatgcatcgatactcgatgactttgacttctacgaggagcgtgagagagccctgctggacaataaggcgcggctgcatcagcaacatcagctgcccagctctactgtggttgagcccaagaagcccttgactgtggccactgatctagttggtcatataactaagagctttgcgcaggcagttcggcttggtgaggccaagaatgtgagccctaattcagctgacaaaggtgccagtggggattcatctgtcgctgcaaagcctttggaagttaaagaggccggcttagcataaagccccagggtgattggttcatactgaaaattctctgatccatgctcttcctctttgaaatactaagaaatgggcgaagacaatgtccagcgcttctgtctggtgaagcattgtacactaggataggatggaagcctagctccttaaatagtttctttttttacctttcttttgttccttatcttttcctgttggtaatatttttcgttgcgtttatatgatgatcgattccttagtggctagccttaaggagagctgcagtttttgtgcaagcctctgtaaatttcccagttcaatcgatctcaagatgaataaggccttttgcctcctccagtaaaatcctctttaatctacttgtcttatactgaacaaggtgtgtctggaaaacaacataacatctgtttgggtgacctggtgatggtaacaataacaacttgttaataataaagagagtgtgaccttgtggtggtcgcttatg</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0556000, RefSeq:Os08g0556000