Os09g0279000

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Revision as of 07:19, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0279000| Description = ENT domain containing protein| Version = NM_001069290.1 GI:115478319 GeneID:4346600| Length = 6115 bp| Definition =...")
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Gene Name

Os09g0279000

Description

ENT domain containing protein

Version

NM_001069290.1 GI:115478319 GeneID:4346600

Length

6115 bp

Definition

Oryza sativa Japonica Group Os09g0279000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:6403497..6409611

Sequence Coding Region

6403768..6403886,6404322..6404385,6404452..6404520,6404598..6404840,6406744..6406812
,6406888..6407112,6407189..6407432,6407507..6407616,6407708..6407794

Expression

GEO Profiles:Os09g0279000

Genome Context

<gbrowseImage1> name=NC_008402:6403497..6409611 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:6403497..6409611 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcaacacaaatccatcatcttgaacaagaagcatattgctcggttcttcgtgcatttaaagcccagtctgacgccattacatgggagaaagaaggtctcataacagaacttcggaaagagctaagggtatctgatgtagaccacagggaactactaaatcgggtcaacagtgatgatattatccgtagcataagggaatggagatcagcaggagggcctcaagcaatgttacccaataatgctcagcctatgcatgatctagcgcctagccctaccacctcgggccgtaagaggcaaaagacatcgcaatcatttcctgccctgcctgcaccgcctcctgttatgcattcacagcagttggctttacaaggaccaccatcatcttcaacagctaaaaagggagcttcatcaggagctaaaggcaaaaagaccaaaccaggtcagaaggtgccagggggcccttcagtcaaggccatgacatcttcagctggtcctagcggaaggggaccacatatgaatagaaactttcctgttggccttgtttcttttgaaccttccgaagcactgcatattaatccattaattaatcgtaaagtcatgagccggtggcctgaagataacagtttttacgaagcaactattactgattataatccagaaacggatctgtatgcattggcttatgacataaatacagctaatgaatcatgggagtgggttgatcttaaacagatgggacctgaagatataagatggcaaggtgatgaccctgggatatatcagggagtccgaggtgctccaggtagtggaggcaagaagtcatctagccgaggtggtccaacaccaggtacaggaagggggaggggattaccaaagcatgtatcccggaaggattttccaccctcacaaaatggagttggcaagagaagttctgatgacattgatatacttcataccgagagcctcataaaagaggtggagagggtttttagtattaataatccagatcccctggaggtagagaaggcaaagaaagtgctgaaggagcaagagcaatcgttgattgatgccatcgcaaggcttgctgaggcatctgatggtgaaagtgatgagcacaatcgtgtgcgaaggaatgcaccatatgctgggagccagcatcaagcaaactatgcagacgctatggctgttgatggtggccacatgcttggaggcgctgatgccgtgtaa</cdnaseq>

Protein Sequence

<aaseq>MATQIHHLEQEAYCSVLRAFKAQSDAITWEKEGLITELRKELRV SDVDHRELLNRVNSDDIIRSIREWRSAGGPQAMLPNNAQPMHDLAPSPTTSGRKRQKT SQSFPALPAPPPVMHSQQLALQGPPSSSTAKKGASSGAKGKKTKPGQKVPGGPSVKAM TSSAGPSGRGPHMNRNFPVGLVSFEPSEALHINPLINRKVMSRWPEDNSFYEATITDY NPETDLYALAYDINTANESWEWVDLKQMGPEDIRWQGDDPGIYQGVRGAPGSGGKKSS SRGGPTPGTGRGRGLPKHVSRKDFPPSQNGVGKRSSDDIDILHTESLIKEVERVFSIN NPDPLEVEKAKKVLKEQEQSLIDAIARLAEASDGESDEHNRVRRNAPYAGSQHQANYA DAMAVDGGHMLGGADAV</aaseq>

Gene Sequence

<dnaseqindica>5726..5844#5227..5290#5092..5160#4772..5014#2800..2868#2500..2724#2180..2423#1996..2105#1818..1904#ctctctcctcgtcgatcagctcgcttcccccccaaatctcgccggattccgccgccgctgccgcgcccgcttcctcccgaggttagccctcccgcggatctcccctccgccgcgccatgccttcgcctatgctgatcccccgtgctctcctccccccccccccccgggttaggggggtggtttggttttgatttcaggtgcagctctggccggggcacgcgcgcgcctccccggcggggggccgccgcagtcggtggactacggcggcggccaggcatccgacagcagcggtgagtaatttgggtggggggagcgagagagagaagggctacggcctccccgtttgggggattttctagggtttcctcgtccgttctcgcgcgcggctgcggtgcgttccgcgtggttgctagggtttttcttgggcgccattttactgcgagcgtcgacgagggtggagggagctagggtttgagcttgccttgtaggggggttttgggttaaagggtctcgtgaaattagcttcgtggaaagatttgaggcgttgtggggggagtgggtttccggcgaattccagctgaatttgtttccctgggatgtgtttgttcgtgcaggtgaatagtgagaacctgtggtgtagcttgtgcaggtaaattcgattggatttagggtatttgcgccgtttctcgcatgggagttaggttttcttaaattgcctggtaatgtgagtccttctggtgtgaatttgattggcatattgtcaattggttacccttgggttggcataataattatttagttgggcacctgttttgttggagcttctttcatagccttgtggcagctcactgtgggagttaatttagaaggtggtactttctgtggttcaggggatatgtcatacctagagtaccctcctgttactgagcttggaagtttttcattttgtttctttagctgtatgctggtgaagtgtaatttcatgttttgttttgttttggagcttttgatatgaaacaatttctgcttttggcttaatatgttttttgtttttaagtggtaagagattttcttatgcatcttaaataacctcgctgttcttggtgaacaaaaggatctttcgtgttgactgactcatctgtggcaatgagctcaactgtcacgctaaaaaaacattgtttttaaacttcttttggtaggtcctggcatttgcaaaaaatagtgttcctgttgaggacttgggaaatttctacttctccattagttggacatgtcgtgaattgatttcagtgttttgatgttgtacgaatccaggagtatttaagttctgatgtatttcaatacatgtgttccttgatagtgggaattgtgatagtatttattcttaaattgtatcaaagtatgatttgttacacagataacacatgttttcaccttttggaatcaatgcctcatatttctcctacaatagtagttagtatgtctatcaacctataggattttgatgaatatgctgcttttcatttggagttgtatattgtgttatttcttggtacatattttctctgtttctcttaatttcaagagcagtatgagctgttttctttagtcagctagcaatgtaggaaattctattgcaaagctgctatggtacttttcctaaatgctgggttttcaaaaacgtgttggctgcaggaactgctgatgatcttcctccaccatatccaagcaataggggtattagaggcagtggacgtgtcagtggtaatggaagagctattgttcctgctggttcatacactagagcccatactgatatggcaacacaaatccatcatcttgaacaagaagcatattgctcggttcttcgtgcatttaaagcccagtctgacgccattacatgggttgttaaccattaaactatggttttattatctttgggtctgtgctgattcatcttgaacattatatctcaaagctgtttctcatttccaggagaaagaaggtctcataacagaacttcggaaagagctaagggtatctgatgtagaccacagggaactactaaatcgggtcaacagtgatgatattatccgtagcataaggtagaatatataaagaagtgttcatgtgtgttctgttttcaacattctgaatttctttcttccttgtaatcaagggaatggagatcagcaggagggcctcaagcaatgttacccaataatgctcagcctatgcatgatctagcgcctagccctaccacctcgggccgtaagaggcaaaagacatcgcaatcatttcctgccctgcctgcaccgcctcctgttatgcattcacagcagttggctttacaaggaccaccatcatcttcaacagctaaaaagggagcttcatcaggagctaaaggcaaaaagaccaaaccagtaagcacataattctgatgtctctttcttaaaaaaagaaatcgggtttctttgatgaagtttcatgtgcttccagggtcagaaggtgccagggggcccttcagtcaaggccatgacatcttcagctggtcctagcggaaggggaccacatatgaatagaaactttcctgttggccttgtttcttttgaaccttccgaagcactgcatattaatccattaattaatcgtaaagtcatgagccggtggcctgaagataacagtttttacgaagcaactattactgattataatccagaaacggtttgttcttacttcattatagctacagttctgttgattcaggcctttgggcttttctaagggattccattgcaggatctgtatgcattggcttatgacataaatacagctaatgaatcatgggagtgggttgatcttaaacaggtttgcaacctttttcctgtgaacatttgaaaattcttcactttaggttttcattgttttctaggggaacattgcatttaaaaatctattgaattattgggatgcttggagatgagcatgatgtagattaggatttcatggttgtcagtactgctggaaatcgtgattttgaaacagttgtcaggggcaaggaaatcgtgattttgttttaccttttgatttgaaccagacattttttgttgtttagaagaaattaggaacttgatcataccatgcacatctatagcactcttgaatcaacatccatgctccgtgaaaactaacataatcaaaagggactggcctattggttaatggttaagcttttatacttattattgtctgacatgctcgtgaaagtaaaatattattgtcaactaatcttccagaccaatccatactctgcccatgtgtttctagtaccagtttgttttgggtatattttgttgtctgtagcaaacattgacaactacatttttctcttagtaaattctttcacccattattacatatacatcaatgtttcacttcattttctagccaaattgtagtccatcaatttcttttgaaagttatgtcacaaacattcggtactgaggatttggggaaaaaaagtagaatctgccagatttattcatgcttcctttgcaaaatggaaagttttgaggattccagcaggaatcgaactaattccagtgaaaatcttgcaaaaattctggatttgtgaggaagcctcaggattctgtacgaatgagaaactgggtacttgggggtgcatttggaccttttatgccctttgcttagccctgtgatgtgaggataagctagccaagctgggcaaatacctcgggcctgtttggcagggcttcaattcctaaatttaactccaagaactgcatctggagtggagttgcagagcagcctaaacccctctctacccccctagttcattttgtgagagcactcagcctgatctgctccatttttgggtgcagctgaaactatttggttgggcttcagcttcaggagagctggagctggttctctgccaaacaagcccctcgtgtaggggtaaacatagggaatagtacaaattacagctaccattaaacaagttgaaagatggttgggtgggaatccaagcaagggcatttaagtaattttcgctaaatctttgctaaacaaactagaaatgtttatattttggaatggagtacctttttttctctttgtgtagaatgaatttaggttagaatttttgtgatgattgattttgtgtcaatgttatcgagtttttttttcttttttgaaaattttcatggtaacttgtattgttcttcgaagaggatgcatgagagcagtgttacaaggacatctgtgtccattttatttttgcggaagtacattccaaccacggatagcatgtagtattgttcttcgaagaggatgcatgagagcagtgttacaaggacatatgtgtccatttttttttgcggaattatacattccaaccacggataccatgtagtattttgcatttccaattttgtaagctgaattagacacgcgaatctgaggattccagtgcatgtctgcgtccagttaacattgtatgtgaacacaaggtactccccgaagatgggatggactagatattttcctgttgaatcacttgcctaagcacatgtttcatcattcttgctggtgaatgtagtaagcgccatagtgagattaatattgtctcagagcactttttgttcatagcatgaatctcacctttttgttcttaagggcactaattagtaatgtacatcaaaatcatctgtgtggactttttcttattgcttgggttgctaaattacagatgggacctgaagatataagatggcaaggtgatgaccctgggatatatcagggagtccgaggtgctccaggtagtggaggcaagaagtcatctagccgaggtggtccaacaccaggtacaggaagggggaggggattaccaaagcatgtatcccggaaggattttccaccctcacaaaatggagttggcaagagaagttctgatgacattgatatacttcataccgagagcctcataaaagaggttagtctggtaacatatttttgttattaataaccacaaacatcgtgtgcattattgtgatttatcttttgacataggtggagagggtttttagtattaataatccagatcccctggaggtagagaaggcaaagaaagtgctgaaggtaaaacacaacttttgtgcatattatttaagcctttcattttcaagtaacacgcaatgtttgcaggagcaagagcaatcgttgattgatgccatcgcaaggcttgctgaggcatctgatggtgaaagtggtaaatactaatctatttgttccttgaacataaggatatggacgttctgatgttgcagaaaaaaattatttctgtttctagtttaggaagtttgccccccaagtccctaataggtgtagcagcttcaactgccatggttgtacaccaattgcttcttttcttgtatattttgttgtatttatttcttcctgggaggtgggatccttgtaactcaatgaacgtttcgtcggaaatatcgtcggccacaacaccaatgttttttttgcagtccgcattttacatctatggccaaatggttacaaattatggtatcccgtacatgtgcaataagcattagtagggcaaaaaatgtcttgataactgagatatcaacattacaaatgaacattctgccatgtatatgtgacaagccttttcctgttttgttgaaatcagatgagcacaatcgtgtgcgaaggaatgcaccatatgctgggagccagcatcaagcaaactatgcagacgctatggctgttgatggtggccacatgcttggaggcgctgatgccgtgtaaaacaattgctggaacatgaagacagaattccatcagaagcctgcatgttgtaaaatcttaccactgaaatttattctgaaattagctctaggtctagtatctttattttggagaatggaagtgctgttttgtagaaaaacttagcatcctgaccatgtaaaatatccagaagtggagctaactttcgtgatgctgcttttttatgttgctaagttaatggataatctcatgttttgcatgcgtgttggtcaacaaaaaagaaatttgctcc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0279000, RefSeq:Os09g0279000