Os09g0311600

From RiceWiki
Revision as of 07:20, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0311600| Description = Similar to NBS-LRR type resistance protein (Fragment)| Version = NM_001069372.1 GI:115478483 GeneID:4346689| Length ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os09g0311600

Description

Similar to NBS-LRR type resistance protein (Fragment)

Version

NM_001069372.1 GI:115478483 GeneID:4346689

Length

5394 bp

Definition

Oryza sativa Japonica Group Os09g0311600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:8914669..8920062

Sequence Coding Region

8914814..8917719,8919954..8920023

Expression

GEO Profiles:Os09g0311600

Genome Context

<gbrowseImage1> name=NC_008402:8914669..8920062 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:8914669..8920062 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtgctgcctctgcgcctctgaagacgccatcgacgaagcaaggtgttcatcctgtggaaaccaagatatggcttccaatcatcattcgcaatcaattttctcggccgtgctttgcagcttcggcaactgtttgcaactgaatattgcgtatgctttcaaacctgaagaggttcttgtcaagctcactgaattcaatagaaggttggaggctaggagtgatgacataaaactaatgatcagtatggctgggagcaaacaacaaacctgtaagcatgaagtgctagattggcttcaaacagttgagctggcccgaactgaagttgatgcaatactgcaagattatagcaaaagatccaaacacctgatctcaaatttcaacatcagcaggagagcctctgacaaactggaggaattggttgacctgtatgacagaggttcttttgaagttgtatctgttgatggacctctaccttccattgaggagaagcctatcagggaaaaattggttggaatgcatttaaatgtgatgaaagttctgagctatctacttgatgcaaaaatcaggttaattggcatatggggcatggggggagtaggaaagacaatcttcttgaaggtcatcaataaccagtttcttggtgttgttgacaatatgccctttgatcatattatgtgtgttgcagcagccaggggttgcgtcctggaaaatcttcagatgaacatagcagagaagctgggattgctctcgaagcagggagatagcatagaatctcgtgccgcaaccatcttcaaccatctgaagaacaagaactttttgctgctcctggatgacctttgggagcacgttgatcttctagaggttggcattccacctccaaatgaatcgaagatccagaaagtagtctttgctactcgctctgaggaaatttgttgtgtgatggaagccgataaaagaatcaaactggaatgtttgcagcctgatgaggcatgggagctgttcaaatacagtgctacagaagaaacaatatgtgcagatatgccgatagaaaatgtcgcgaaaagagtttgtgcaaaatgccgtggtttgcctttggcactaatcactgttgggaggtccatgcgtgcaaagagaacgtggcgcgagtgggagaatgccctgtcaacttttgatgagagcactcagcttttggaagcttcagagatgaaggtcattaaccctattctgagcaccctgaggatttcctatgacaatttggagaatgatcagctgaaagaatgttttctggtttgcttgctatggcctgaaggctattcaatttggacagttgatcttgtgaattgttggattggtttgggtctcgtccctgtcggtagaacaatcaatgatagccataacattggattatcacgaattgagaagttgaaaagattgtgcttactggaggaaggtgatatcaaacaatcagaggtacgactccatgatattatccgtgatatggccctctggattgcctcggactataagggcaagaaggatagctggctactgaaggctgggcaccgattaagaaatgtgttaagctgtgaagttgatttcaagagatggaagggtgccacaagaatatcactgatgtgcaacttcttagattctctgccatcagagccgatcagttctgacctatctgtgttagttctgcagcaaaatttccatttaaaggatatcccaccatccctttgtgcaagcatggctgctctcaggtatttggaccttagctggacacagattgaacagctgcccagagaagtttgttcattagtaaaccttcagtgcttaaaccttgctgattcacacatagcatgtctgccggaaaatttcggtgacctgaagaacttacggttcttgaacctcagctacactaaccatcttaggaacatacccagtggtgttatatctagtctgtccatgctgaaaatattgtacttataccagagtaagtactcaggctttgaattggagttgagcaaaaacattacgggcagaaatgatgaattcagtttaggagagctgagatgctttcacacagggctatccctgggtattactgtgagaagtgttggtgctcttcgcacactatcgctgcttcctgatgcctacgtacaccttcttggcgtagaacaactggaaggggagtccactgtgagcctgaagctgcagagtaccgtcacggtggtaaacttcaggatgtgcctcggtgtagaagaattgtcaatcgaacttgacaatggccaagatccagagaaatccattccgcagttggagtacctcaccttctggcgcttgcccaagttgtcttccgtgaagattggtgtggagctcctctacatccgaatgctatgtatcgttgagaacaatgggcttggcgacatcacctgggtgctcaaacttccgcagctggagcatcttgatctgtcattctgcagcaagcttaactcggtcttagccaacgcagaaaatggagagagaagagatgccagcagagtccattgcctgtcaagactcaggatattacagttaaaccacctgccgagcttggaatcaatctgcacatttaagctggtctgcccttgtttggaatacatagatgtgtttggctgcccattgctgaaggagctcccgttccagttccagccagacaacggtggctttgctcggttgaagcagatccgtggagaagaacaatggtggaacagtctgcggtgggacggtgatgccacccgtaatatgttgttgccattttacaaggtgtttgacaagaacctagagacttttgagccagctcttggcaccaatccgttcgtccaagcttcagggtcattcttcgcacatcgcaaaccaatgatgaggacggctattcagttctcgtcatatctctcgctgctctttggagcacaggtggcatcgaccaattaa</cdnaseq>

Protein Sequence

<aaseq>MSCCLCASEDAIDEARCSSCGNQDMASNHHSQSIFSAVLCSFGN CLQLNIAYAFKPEEVLVKLTEFNRRLEARSDDIKLMISMAGSKQQTCKHEVLDWLQTV ELARTEVDAILQDYSKRSKHLISNFNISRRASDKLEELVDLYDRGSFEVVSVDGPLPS IEEKPIREKLVGMHLNVMKVLSYLLDAKIRLIGIWGMGGVGKTIFLKVINNQFLGVVD NMPFDHIMCVAAARGCVLENLQMNIAEKLGLLSKQGDSIESRAATIFNHLKNKNFLLL LDDLWEHVDLLEVGIPPPNESKIQKVVFATRSEEICCVMEADKRIKLECLQPDEAWEL FKYSATEETICADMPIENVAKRVCAKCRGLPLALITVGRSMRAKRTWREWENALSTFD ESTQLLEASEMKVINPILSTLRISYDNLENDQLKECFLVCLLWPEGYSIWTVDLVNCW IGLGLVPVGRTINDSHNIGLSRIEKLKRLCLLEEGDIKQSEVRLHDIIRDMALWIASD YKGKKDSWLLKAGHRLRNVLSCEVDFKRWKGATRISLMCNFLDSLPSEPISSDLSVLV LQQNFHLKDIPPSLCASMAALRYLDLSWTQIEQLPREVCSLVNLQCLNLADSHIACLP ENFGDLKNLRFLNLSYTNHLRNIPSGVISSLSMLKILYLYQSKYSGFELELSKNITGR NDEFSLGELRCFHTGLSLGITVRSVGALRTLSLLPDAYVHLLGVEQLEGESTVSLKLQ STVTVVNFRMCLGVEELSIELDNGQDPEKSIPQLEYLTFWRLPKLSSVKIGVELLYIR MLCIVENNGLGDITWVLKLPQLEHLDLSFCSKLNSVLANAENGERRDASRVHCLSRLR ILQLNHLPSLESICTFKLVCPCLEYIDVFGCPLLKELPFQFQPDNGGFARLKQIRGEE QWWNSLRWDGDATRNMLLPFYKVFDKNLETFEPALGTNPFVQASGSFFAHRKPMMRTA IQFSSYLSLLFGAQVASTN</aaseq>

Gene Sequence

<dnaseqindica>2344..5249#40..109#atcttcatattgctggttgatgtgcttgagcctgggtgaatgtcgtgctgcctctgcgcctctgaagacgccatcgacgaagcaaggtgttcatcctgtggaaaccaaggcaagtgggtcttctgccttcttgatcaccatgtctcgcctctgttgtgctctgcatgttttgataagctatgagttaaggtgatctgccaatccgatagagttatacatcttcagttttctgtgtacaagcatgaccttctctcttttttcaccttgatgatatcttttagtatttggttgggatatcaggacttcttttagataggcgcatcactctggtttctgcatcctttttattttggagtgttcttttttctggtaactcggagggataccataaatctgagagcactggagtaacatgtgtatacatttacttaagcactagcctcctgaatccataattcatttatgttgtctatcaaatttagagaaattttatggtccttaagaaagtaccttgagatatctaacctaaatttggtacctcatggtacctcatagtataccaagaggtaccaaatttataatagaaaaaagagcaattctacggtccttgaggaggtaccatgaggtaccaaaattttattgtaaattttggtacctcattgtacctaggtaccatgaggtaccaaatttacaatagaaaaaatggtacttcatggtaccttctaaaggaccgtaaaattgctctagaaaaaatgttacctcatggtacctcctaaaggaccgtaaaattgctcttatattaaaaattttgttatctcgagatacctaatatctgaagataccaaattttacgctagaaaatatggtatctcccagtactattttcaaggaaggtataattacccttcaatttaacatatatagtgctattagcatatcagacatttattcggagtattaggctagcttaaaatccacacattctgtacttaagcatatgtatacttatctcactatctgtagtgaatagttttgttatccaaccatctaatcttgtaacaagatagatctgttttattgagaagacgacattagtaacatggataacataaataattgaaacccatcgattcaatcaatagcagaaatctcagtcaggacatcatgccagctaaatgttgaaaaaatggtaggaaatgatgtgctcacagtccttccaggcctaatacagtgtaactagcattgtggtccgcgcagattgcacggctagcatcattatatttgctctcatataatagcatatatgttttctcattatattattaaaatatattaaaatgataatataattttaaattttgcaataactctcatattatttatttttatttcttaatttttattatttctaattttatttctatgtggactctaaactcatctttgaatattcttttaatttttaatttttcgaatttcagtacttctaaattgtattcctatattgaccttaaactcttcttcccatatttttcttaattttaaattttagttatttgtaaattatatttttatacggactctaaactctacttttaattttattatgtttattccaaattttagttagttttaaattcctatatggactctatactctacttctaatattccttatttttaattccgaatttctatttttttcttaattgtatttctatatagactctatactctacttctaatatttcttatttttaattctgaatttcagttatttcctaattgtatttctatatggactctatcctctacttctaatattccttattttcaattccgaatttcagttatctcctaattgtattcctgattgtatttctatatggactctagtctcctcttctaatattccttatttttaattccgaattttagttatttcctaattgtatttctatatggactctagtctcctcttctaatattccttattttttaattccaaatttcaactatttctaaattgtatttctatatggactctagtcttatcttctaatattccttattttttaattccgaatttcagctatttctaaattatatttctatatggactttgctttttcttttttctgattaatgtgagaatttctaggccatgagagcgaacgtggaggctcctttttctattcctttaataatataatagattgagagtgaaaaatgagtagtgggtattgaagtttatatttgtgtaatcttcctcacattgtttcatcttcccctttaccccttttctgctagagcatgagctcacaggtttttactctttaacagatatggcttccaatcatcattcgcaatcaattttctcggccgtgctttgcagcttcggcaactgtttgcaactgaatattgcgtatgctttcaaacctgaagaggttcttgtcaagctcactgaattcaatagaaggttggaggctaggagtgatgacataaaactaatgatcagtatggctgggagcaaacaacaaacctgtaagcatgaagtgctagattggcttcaaacagttgagctggcccgaactgaagttgatgcaatactgcaagattatagcaaaagatccaaacacctgatctcaaatttcaacatcagcaggagagcctctgacaaactggaggaattggttgacctgtatgacagaggttcttttgaagttgtatctgttgatggacctctaccttccattgaggagaagcctatcagggaaaaattggttggaatgcatttaaatgtgatgaaagttctgagctatctacttgatgcaaaaatcaggttaattggcatatggggcatggggggagtaggaaagacaatcttcttgaaggtcatcaataaccagtttcttggtgttgttgacaatatgccctttgatcatattatgtgtgttgcagcagccaggggttgcgtcctggaaaatcttcagatgaacatagcagagaagctgggattgctctcgaagcagggagatagcatagaatctcgtgccgcaaccatcttcaaccatctgaagaacaagaactttttgctgctcctggatgacctttgggagcacgttgatcttctagaggttggcattccacctccaaatgaatcgaagatccagaaagtagtctttgctactcgctctgaggaaatttgttgtgtgatggaagccgataaaagaatcaaactggaatgtttgcagcctgatgaggcatgggagctgttcaaatacagtgctacagaagaaacaatatgtgcagatatgccgatagaaaatgtcgcgaaaagagtttgtgcaaaatgccgtggtttgcctttggcactaatcactgttgggaggtccatgcgtgcaaagagaacgtggcgcgagtgggagaatgccctgtcaacttttgatgagagcactcagcttttggaagcttcagagatgaaggtcattaaccctattctgagcaccctgaggatttcctatgacaatttggagaatgatcagctgaaagaatgttttctggtttgcttgctatggcctgaaggctattcaatttggacagttgatcttgtgaattgttggattggtttgggtctcgtccctgtcggtagaacaatcaatgatagccataacattggattatcacgaattgagaagttgaaaagattgtgcttactggaggaaggtgatatcaaacaatcagaggtacgactccatgatattatccgtgatatggccctctggattgcctcggactataagggcaagaaggatagctggctactgaaggctgggcaccgattaagaaatgtgttaagctgtgaagttgatttcaagagatggaagggtgccacaagaatatcactgatgtgcaacttcttagattctctgccatcagagccgatcagttctgacctatctgtgttagttctgcagcaaaatttccatttaaaggatatcccaccatccctttgtgcaagcatggctgctctcaggtatttggaccttagctggacacagattgaacagctgcccagagaagtttgttcattagtaaaccttcagtgcttaaaccttgctgattcacacatagcatgtctgccggaaaatttcggtgacctgaagaacttacggttcttgaacctcagctacactaaccatcttaggaacatacccagtggtgttatatctagtctgtccatgctgaaaatattgtacttataccagagtaagtactcaggctttgaattggagttgagcaaaaacattacgggcagaaatgatgaattcagtttaggagagctgagatgctttcacacagggctatccctgggtattactgtgagaagtgttggtgctcttcgcacactatcgctgcttcctgatgcctacgtacaccttcttggcgtagaacaactggaaggggagtccactgtgagcctgaagctgcagagtaccgtcacggtggtaaacttcaggatgtgcctcggtgtagaagaattgtcaatcgaacttgacaatggccaagatccagagaaatccattccgcagttggagtacctcaccttctggcgcttgcccaagttgtcttccgtgaagattggtgtggagctcctctacatccgaatgctatgtatcgttgagaacaatgggcttggcgacatcacctgggtgctcaaacttccgcagctggagcatcttgatctgtcattctgcagcaagcttaactcggtcttagccaacgcagaaaatggagagagaagagatgccagcagagtccattgcctgtcaagactcaggatattacagttaaaccacctgccgagcttggaatcaatctgcacatttaagctggtctgcccttgtttggaatacatagatgtgtttggctgcccattgctgaaggagctcccgttccagttccagccagacaacggtggctttgctcggttgaagcagatccgtggagaagaacaatggtggaacagtctgcggtgggacggtgatgccacccgtaatatgttgttgccattttacaaggtgtttgacaagaacctagagacttttgagccagctcttggcaccaatccgttcgtccaagcttcagggtcattcttcgcacatcgcaaaccaatgatgaggacggctattcagttctcgtcatatctctcgctgctctttggagcacaggtggcatcgaccaattaacaggtctgtcggttttttatttaagaatcgaatcaaatacatcgtctggctaaatttctaataactcctcctcttgaaatggtggaccagcacccacttgaatgtatttccaatgtactactattgctagaattgcaaatatcct</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0311600, RefSeq:Os09g0311600