Os09g0318600

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Revision as of 07:21, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0318600| Description = Homeodomain-like containing protein| Version = NM_001069387.1 GI:115478513 GeneID:4346704| Length = 4540 bp| Defini...")
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Gene Name

Os09g0318600

Description

Homeodomain-like containing protein

Version

NM_001069387.1 GI:115478513 GeneID:4346704

Length

4540 bp

Definition

Oryza sativa Japonica Group Os09g0318600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:9535027..9539566

Sequence Coding Region

9535504..9536679,9536763..9537170

Expression

GEO Profiles:Os09g0318600

Genome Context

<gbrowseImage1> name=NC_008402:9535027..9539566 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:9535027..9539566 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtcctcgcccacctggtggttcttcagataaaaaaagttgtcaaaatgtcacaccagataaagacagctctatgaatttctgccaccaacaatatccgcagcacctattttcacaaccaccatatgcaatgaatttcccattcccaccatttcctcactaccctccatacacacaaaatttgcaatatgctgttccaccacaatatgctccatacacattaccacctcctgctggagctatgccatcaacatttttacctgctccagttattccatccaaggcaccgtctgaccaaggcaccccgcgttcaataactggtccaggagaacaaggcactgacaatgctgaacctgagaaggctactaagcgactatattggacagaaaaggaggacataagattgataagcgcctggttgatttattacaagactgacaggtactgggaaaaggttgtagcagaatacaacagtacaatccctgcaactcgaagaagggaacttcaacatgtgaagggccactggcacaagatattcagaaaggtggcacacttccatgattgttggtgccgggttaaggcaaaatatcctagtggccactctgagggcatgcaactgatggacaaaacttggctgatgtataatgaggaagcacgtgtgatgtatcttgaagaagcagagcataatttcgccttcgaccattgctggaaagcagtttggaaccaacccaagtggaaagcatacatgtcttgtttatttacgaaaagaacaatgcagtctgattcttgggagtacatgtcgtcttctgaagactctgaagaaatgcctggaaaagaaataggtgaagaagtttgcatgacatctaaggaagctaaagttaagaggtcaacttcgtcttcagagatgcaagaagacatgcttatcaagaaccctgaggagctgacagaagtagagccttctatctccaatgaaaagcttctgttggccagtttgaaacaacaagatgcttgcaccaaggacacaggaatttccaagaagcaatcagaattattgacagctgatacttcctggcccactggatttcgtcttgttgacacttcagaattgaatgaacatcaacaggggttggcagtaagggatgatatgcttgaaaaagaatcacgtccacaaggtttcgatgcacaagacaacgagagggcgacaagggaaaacattcctagaaaagaaacacagccacgaatttgcaaggcaccaaagttcagtcggaaacgtaaaggcaaggcatcgtcttcctcatgcgaggtgcaagaagacatcaaacatgcgatgcatcttcagaccatgcttaacaatgatcgtgtgaagatgtcagaggtacagctccgcctctcgaaagagcagcttgaattggccagaataaagcaggaagaagcaagggagaagaaggaaactacactttacaagaagtacacggagctgttgctggcagacacttcaaggttcgatgagtttcagaaggcagagtatgagaaagcactgaggcatataggaggaatgctattcagcaaggatggcaattag</cdnaseq>

Protein Sequence

<aaseq>MGPRPPGGSSDKKSCQNVTPDKDSSMNFCHQQYPQHLFSQPPYA MNFPFPPFPHYPPYTQNLQYAVPPQYAPYTLPPPAGAMPSTFLPAPVIPSKAPSDQGT PRSITGPGEQGTDNAEPEKATKRLYWTEKEDIRLISAWLIYYKTDRYWEKVVAEYNST IPATRRRELQHVKGHWHKIFRKVAHFHDCWCRVKAKYPSGHSEGMQLMDKTWLMYNEE ARVMYLEEAEHNFAFDHCWKAVWNQPKWKAYMSCLFTKRTMQSDSWEYMSSSEDSEEM PGKEIGEEVCMTSKEAKVKRSTSSSEMQEDMLIKNPEELTEVEPSISNEKLLLASLKQ QDACTKDTGISKKQSELLTADTSWPTGFRLVDTSELNEHQQGLAVRDDMLEKESRPQG FDAQDNERATRENIPRKETQPRICKAPKFSRKRKGKASSSSCEVQEDIKHAMHLQTML NNDRVKMSEVQLRLSKEQLELARIKQEEAREKKETTLYKKYTELLLADTSRFDEFQKA EYEKALRHIGGMLFSKDGN</aaseq>

Gene Sequence

<dnaseqindica>2888..4063#2397..2804#gccgccaaaaccctcgcctccttccccccacgccgcgctccgacctctcgccgccggcgagcccccgcgtgatctccatcctccaacgcagcgccgccgcccgcccgcgctcccgaccaccgcggccctaacgcgctgcgccgggggagcttcccgtctccgcggcgctgcttcgcgtacgcctcctcctcctcctcccgccgccgcaattccgacctcctgatgtgctccgagaaaggcatcggggaggagccggctgttgccctcgccgtcaatctctgatttccacccaaggttgggagctggggcgagtagaaatagtttcttttcttcgtgttgcagtgttattgaagatctagcttttttttttcctttcctttctctctttaggaggagggatcgaagcaggaggcctgagcccaagaatccagctggattaggttaccattttcatcaatctgagtgtatgcttgcagactatgcattattgatttcttcttatgataatgcagtaatgtggttgtgcttattgctgccattttatagaaatttgtcccagtagtcaaaataatgggttgcattgtgcaattaaccactctatatgccagttatcttcccaacttggcagatgacatccatgtaccgtatttgtctttcctaatcttgagcttcttctcatttttgtcgatgtaaatggcatttctgtttgtgaaaaatattagtttatctgcctgtcatagagtggctaatgcagcttttattttctcgcttttttggactggacaatggatgttacagttttatggcaattatttttcttttagatgacactgtggcctgtaggacagactattagggaactcttacaattaggttctatgaaagtttggatgttggctgcttgttatttttggacgtaaactattaaatagaccacattcagtttagtgatggcattatgcacctccttccttattgaacaggcactttcttttcatatcacatcttatttgtttagtttgcggagatggactgctcctttcaaagatagcttgtgttttctcttatcccatgctctgccatgttggtagaactgatgcttccattcagtttcttacccttataccgtcataatatcaaaatgatttaggagataacatgtcctttgtgaaacttggaacatttagtttccattaatgattttgacattcaatttgcacaggtgaattagatctgtcatagtaaacactagctttacttgtggaatttatgcaaagacttgttgcaaatgatgtaccctttttcttcagaacctttattatgtaaaaaacagttgaataccactatcaagactccaataggtctacattgtttgagaatggcatttccagtccggtgcaagactccaataggtcttgcattaagctctgtatttctattggcctctgattccttttaggacactgtaacagttggcttctcaaacatagaaacagcatattctgtttcatatattgtgcatcttggtctacttaaaggtcttgtttatctttctctagatgtcttatccggagtgacttaagacacacatttggtcgaactgtatcatgttcatttctcaccactggaattagagtaaatccttttgcactttgattgttcaaggttgcgtgttttactagacaacttgagcttggtaatgttccaaaaaaatatgctgaagttgataggagttcgcacttggcagacggtagggggcacatcaaaggttttgattgtgggttggtaatttcttgcctatttggtcggcactttgttgcttggttcacttaattcttgttgtgagcagtactttggttactctgtgttccatgtggaaatgggaattgattcattagagaatctggcctttgggctctactaaaagggccctaactcaatatacttcagagcaaaaaaattaaaaatttgagttcataatttgttttgtagtgtgatgaatttaatagagttatttcattaggtgataaaaaattcttattgtttgtaataaatcagattaagtacataatttcaaatcttttattctattatgcttttttgcaggagtgttacaccggccttgacacaattaattgcaatactactgtttctgctgacctgctttggtctagtgggagatcaagtgttaatgtttccgatttgtggtatctccaggacagtgactgaaagtacacaaagagctgaacaaaagagctattgggtatatttcccttaacagtttgttgggaacatttgccaaataggtggttcagaattgcctccaaacccatgtgtttcacacacatctgatcacacccaatatacacattccgtacaatcttctctcgtttgcaatgggtcctcgcccacctggtggttcttcagataaaaaaagttgtcaaaatgtcacaccagataaagacagctctatgaatttctgccaccaacaatatccgcagcacctattttcacaaccaccatatgcaatgaatttcccattcccaccatttcctcactaccctccatacacacaaaatttgcaatatgctgttccaccacaatatgctccatacacattaccacctcctgctggagctatgccatcaacatttttacctgctccagttattccatccaaggcaccgtctgaccaaggcaccccgcgttcaataactggtccaggagaacaaggcactgacaatgctgaacctgagaaggctactaagcgactatattggacagaaaaggaggacataagattggtaagcatgccttggccttttttctatttgtaatttttggaccttgcaaatggcgcactaacatctttctgctggaacaacagataagcgcctggttgatttattacaagactgacaggtactgggaaaaggttgtagcagaatacaacagtacaatccctgcaactcgaagaagggaacttcaacatgtgaagggccactggcacaagatattcagaaaggtggcacacttccatgattgttggtgccgggttaaggcaaaatatcctagtggccactctgagggcatgcaactgatggacaaaacttggctgatgtataatgaggaagcacgtgtgatgtatcttgaagaagcagagcataatttcgccttcgaccattgctggaaagcagtttggaaccaacccaagtggaaagcatacatgtcttgtttatttacgaaaagaacaatgcagtctgattcttgggagtacatgtcgtcttctgaagactctgaagaaatgcctggaaaagaaataggtgaagaagtttgcatgacatctaaggaagctaaagttaagaggtcaacttcgtcttcagagatgcaagaagacatgcttatcaagaaccctgaggagctgacagaagtagagccttctatctccaatgaaaagcttctgttggccagtttgaaacaacaagatgcttgcaccaaggacacaggaatttccaagaagcaatcagaattattgacagctgatacttcctggcccactggatttcgtcttgttgacacttcagaattgaatgaacatcaacaggggttggcagtaagggatgatatgcttgaaaaagaatcacgtccacaaggtttcgatgcacaagacaacgagagggcgacaagggaaaacattcctagaaaagaaacacagccacgaatttgcaaggcaccaaagttcagtcggaaacgtaaaggcaaggcatcgtcttcctcatgcgaggtgcaagaagacatcaaacatgcgatgcatcttcagaccatgcttaacaatgatcgtgtgaagatgtcagaggtacagctccgcctctcgaaagagcagcttgaattggccagaataaagcaggaagaagcaagggagaagaaggaaactacactttacaagaagtacacggagctgttgctggcagacacttcaaggttcgatgagtttcagaaggcagagtatgagaaagcactgaggcatataggaggaatgctattcagcaaggatggcaattagtgcccttgcttcaatttgtcttaaagcgttactgtgcaaatgtcatctcaagcactagctagtcatagatccttctattctacctgttgaatgaagggactagtcatagatcacttgcaagtttagcctagacttactgacatccagtttgtggaacttgactaattgaatcctgtaagtgatggatcaatatgtagtcagctttagttggctcgtctaagttcttaggaatgttcattcagctggcagaaatgtccattttgctaacctgatctacactagcaagaatgcttgaacagtgatgtctatgcaacatcgacggcaagaatgcttgaacagctatagtgtagataaggcaacctctttgttggttgtcgtgagaacattctggggtgtcagctgtgatctcacattgcatcccatgccaaaaacaaaatgttcctattcggacaagagaaaactaattatgttgcatcc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0318600, RefSeq:Os09g0318600