Os09g0498600

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Revision as of 07:30, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0498600| Description = KH domain containing protein| Version = NM_001070102.1 GI:115479946 GeneID:4347471| Length = 6189 bp| Definition = ...")
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Gene Name

Os09g0498600

Description

KH domain containing protein

Version

NM_001070102.1 GI:115479946 GeneID:4347471

Length

6189 bp

Definition

Oryza sativa Japonica Group Os09g0498600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:19933568..19939756

Sequence Coding Region

19935073..19935309,19935550..19935801,19936559..19936936,19937345..19937421,19937695..19937803
,19938412..19938555

Expression

GEO Profiles:Os09g0498600

Genome Context

<gbrowseImage1> name=NC_008402:19933568..19939756 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:19933568..19939756 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcctgattatcatgcaaggaattattcaagtaatatggctgcccccggtcctagattctttgttgaacaagagatagtcttcaggatgatatgtctcaatgaaatggtggggagcataatcggaaaaggtggttcaactattcgcgcattacaaagtgaaactggtgcttcgattaagattatagagcctaattctgattcagaagaacgtgtaattgtgatatctgcacatgagaattctgagatgatgcattctccagctcaggatgcagtacttcgggtgcattctagaatctcggagtcatcgatggataaaagttctgctgtaactgcaagacttcttgtaccatcacagcatattggttgcttactaggcaaaggtggttctatcatcgcagaaatgagaaaaataacaggagctggtatccgaattttcgggaatgaacaaattccaagatgtgcacaacgaaatgatgagctagttcaggtcacaggtagttttcaatccattcaggatgcattgcttcatatcactggaaggattagagatgtcatcattcccatgaagccacatccaggtggaggtatgcccccatatccacctggtggaaacgctccacctcaccacccaagacaagaaccagcaccaccgcatcccactggaggcatgcctccatatcctatgccttctttcagagctgatcgtcctatgggtccttttgatatggtcgatcatcgaccacctccccctcattcaatggagcacatgggtgctgataggatgccctactcatatggttgtgaacaaggaggtggtcctcgaccttttctggaccagccatcaccaagtgcctgggctcctgaggcaccaaacagtgaagctccaagaaatatgcctgagacagtaccacctgcagatttcagaaagggagcagtggcaggaacaaatcaagtggctacaccatctaatgcaactgaagtcattattccccgcaagtacataggttttatttgtggagccaatggcagtgaccttgctgagataaagaagatgtcaggtgccacaattactgtccatcatccaaaacctggggatgcaaatgcattggttattatatgtggggatcctgaccaaactaagaaggcacaaagcctacttcacgcgttcatcttttgtggtctctaccaaacttag</cdnaseq>

Protein Sequence

<aaseq>MPDYHARNYSSNMAAPGPRFFVEQEIVFRMICLNEMVGSIIGKG GSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSEMMHSPAQDAVLRVHSRISES SMDKSSAVTARLLVPSQHIGCLLGKGGSIIAEMRKITGAGIRIFGNEQIPRCAQRNDE LVQVTGSFQSIQDALLHITGRIRDVIIPMKPHPGGGMPPYPPGGNAPPHHPRQEPAPP HPTGGMPPYPMPSFRADRPMGPFDMVDHRPPPPHSMEHMGADRMPYSYGCEQGGGPRP FLDQPSPSAWAPEAPNSEAPRNMPETVPPADFRKGAVAGTNQVATPSNATEVIIPRKY IGFICGANGSDLAEIKKMSGATITVHHPKPGDANALVIICGDPDQTKKAQSLLHAFIF CGLYQT</aaseq>

Gene Sequence

<dnaseqindica>1506..1742#1983..2234#2992..3369#3778..3854#4128..4236#4845..4988#gttagctaagctgtagggttttagctcaaccgtccacccccatggaaatctcccccaactccgccgccgccaccgccgccgccacggcggcggctccggcctcttcctcgacctcctccccatccgcccccaagcgcctcaccaccacgctccgcatcctctgcccctccagccgcgcgtccgcgctccgcggggcgtcgcgggacctccacgtggaccagccccccgtcggcgacgaggccgtgctctccatctccgggccggacgcccccgccgtggccgtgagggcgtgggagcgggtcgtggggcacagggtcgggggcgacgaggccgccggggaggaggagagggaggtgcccggcgtggtgggctgccggatgctggcggcgagcgggcaggtcgggtgcgtgctggggaagggagggaagacggtggagaggatgcggcaggagagcggcgcgcagatcagggtgttccggaacagggatcagctccctccctgggctgcgccggtggacgagcttatccatgtacgcatctcaactcagctcacagatatttcttcttttttgtgctatattcatctaatcatcccccctgacattgcgtgggtggattattcatcacaatttttcggtgcgcccggcgtgttcatccgttagctagaaatttatgatgaaatgaggtggttcaaacttataatgaggtggatcgtgtgccttagttgcttgcaaaactgctaaaattgtttatgggagtttgagcggtgtattgcactatgcaaactaatgaaaaggcaattttttgataggatgataatttaatataggtggtaggataagtttcagttcattcatggttatgttacgggtcctgtatttctttcagctcatatgcatcttgttcaaatgaacaaataagttcgaaatgagctatcttgcctgatttgtactttataattggctcttattgcgattcagcaattgaaaacataagggtgatgtctttcatataatttattacaatagtgttttatcgataaggagtttgtagagaaaatataattaaaggttggttatttttgttgcatagagtcatagaagtcaaattcattatgagcaagttccgcacctctgattatgtagttctaggaaatcataatgtcccagttctaaatatactaaaattgtaatagttctttttacctttcccgtatacttaagtgttgcattgctaacggctttatagtttgaaatgctcaagatggacatttttcttctttaacttgggtacctattaaaaattcaggtcattctgacacggtaaccttttcctgttagataagtgggaacttttctgcagtaaggaaagcattattgttagttacaacctgccttcaagataaccctaggccagatgcaagcaactttccacctggaagatttgggcctcctggcccagttggcatagatcctcattctcaaagaggctatttaccaccatccatgcctgattatcatgcaaggaattattcaagtaatatggctgcccccggtcctagattctttgttgaacaagagatagtcttcaggatgatatgtctcaatgaaatggtggggagcataatcggaaaaggtggttcaactattcgcgcattacaaagtgaaactggtgcttcgattaagattatagagcctaattctgattcagaagaacgtgtaattgtgatatctgcacatgaggtgtgtctctgaacctataaataaaagtatctgtttaatttcaagtgattaaaatccttatgcagggagagtgaattttattttctcaacgtacaatatagatctgtgcatctgtaaacattggcatgccatgtgcatcggtgtcctgccaacaatgatgggagatatgcgattaattttgtccttaggttttcagttgtctggagttatttttgatgggtttaatcttatttgttgcagaattctgagatgatgcattctccagctcaggatgcagtacttcgggtgcattctagaatctcggagtcatcgatggataaaagttctgctgtaactgcaagacttcttgtaccatcacagcatattggttgcttactaggcaaaggtggttctatcatcgcagaaatgagaaaaataacaggagctggtatccgaattttcgggaatgaacaaattccaagatgtgcacaacgaaatgatgagctagttcaggtatttaatgttatagtaatcaaccactccattttatgttcttgtgcatgctatgaattttcagtaataagttccatgttttatgtgcgccgcagtggtctcttaagtttacatgtccattcgaaattttcatcgttatgcatataatctactaataacacctagttatagtgtgttctttgctttaattgtggtcttgtagcaaaaattttaagtttgatacaagtgttggttaatgtaaagtatcaacactactataaagggtcccaccttactgaatcacattaaaggttcagtgttgaggtgaactttgtttaccagtaatagctaagagcataaggtcttcagacttcagtgtgatactgtgaatatgtgatcaattcaagtatgttgggaaatgtcaagtatgcaaagcatgctcttgaaaaagatttccaagtgaactactttatacgtattcaaagaagcaaactacagaatatctttgtcctgttaaatttaagaaagcagaattgtttactttgtggcatatgctgtaactcttttgtggtaattttggccaacctgtttcacatcacaagttatccatttgaaaaatgatccacagtttatcacaactaatcaactctttcaagtggctttcattgaatcttccttttaagaaagtttacttaggttattcatagctgtgttattcttattcccttgacaattgctgaccaggtgttaaatgtaactatggagtttcttcttacaggtcacaggtagttttcaatccattcaggatgcattgcttcatatcactggaaggattagagatgtcatcattcccatgaagccacatccaggtggaggtatgcccccatatccacctggtggaaacgctccacctcaccacccaagacaagaaccagcaccaccgcatcccactggaggcatgcctccatatcctatgccttctttcagagctgatcgtcctatgggtccttttgatatggtcgatcatcgaccacctccccctcattcaatggagcacatgggtgctgataggatgccctactcatatggttgtgaacaaggaggtggtcctcgaccttttctggaccagccatcaccaagtgcctgggctcctgaggtaacttactatgcgtttattctagaatgtaggaaacacatatatgggaaatgcagtttggaattaggcagaagttcttcagcatttttcctgggtgtgcagtgcacaatggtctctttcatgaatttccaccaacattcgggtcctgctgacaagcgataggatgcttgccagcaggggtggatccaggactgggcagtctgggacaactcagcctattttggctcatgttaacttagcatcataaaaagatcaaagcccatttgtcgtaaaaaaatacatcaaagtccaggacttgggtttgccttgccaccagagttttattagaaaactgtaaaagtttgcacaccacttctcttgttgatttaggtgttgtaggcttagaataaagtccctgatcttgtgcaggcaccaaacagtgaagctccaagaaatatgcctgagacagtaccacctgcagatttcagaaagggagcagtggcagggtaagttaatttccatttggtggtgtttctttctctttgacctttcactaaaaggaaatattctcaatttctcattctgttaatcttttaggggctaaaagactttgaaaagtatatgcatgagaacttgtgtggaaagcaaaagattgaatcgaagcatatatagttctcttctagcaatgcaacccattttgaaaaacaaaactaaatggcaaattctcctttctaaagaaggttacttagaacagtgttttgacttgttcttctcaacagaacaaatcaagtggctacaccatctaatgcaactgaagtcattattccccgcaagtacataggttttatttgtggagccaatggcagtgaccttgctgagataaagaaggtacttactctctgctttattagttttcagcattcatctaacttcccttgttgtcttgccctcaccagtgatgcaaaggacatgccagtttttttacttgttatcatggagtggaagcccttgtcaacttgttgccttgtccttttctctagaacaaagtccatgcatacagcctgtgcaacagtcactatcatgccatatttactggtaccagaaaatgaaatgaaaattaaaagaacatgtaaaacattcttcttcactatacctatttcaaattcactctgttttaaggctgaaaagaagagaaaaggcaatcaaatgataaattaaaaggaaaagtgaaaaaataattattcatagcaaacttgtctttttgtatcttaaaaattttgtccttgaagttgaaatattgatgggtgctaggacaatccataaagtatatatcttcatttgttcttggaattttccatattgatttggtgctatatacaaaagctgattgtacctcaaccaatgattgtactagatgtcttgccataacaagatccctcgcatcatctttgttattttgatggttctaacgctgggagttaatgtttacctttcagatgtcaggtgccacaattactgtccatcatccaaaacctggggatgcaaatgcattggttattatatgtggggatcctgaccaaactaagaaggcacaaagcctacttcacgcgttcatcttttgtggtctctaccaaacttagccctgagctttcaggttggtttcccccctgactgattgcacatgtacaattgtaactggcatgaatgtggatgagaatgtggaacattctttcaatgtgaattatttttttctcatttcatgtgagccgtgcgcatgcgcattactgcatcaatgtaaatcttgtattatttttgttctggtacaagaaatggccatgaagcatgagtgtctatgtgttttgcatgtcgatgttgctctggatcttcagctggattttccgtatggtcgtacgagggatttttttccaggaaactcatcagtggtcactggtcacagatgcaactgttcttttgtgctatctggtaagtcttgacttgctggatcatagacgacctcctccgatgtacaagcaacgacgctggcagtgtcaatcagctagctcgtctttgcttggaatccaaatttttgtcacagccattcccagttcaattcaatttggtgagttttcacttttttttgttagcctactatttgtatgagtgttttctagttctaacttagttgtgttgaatcctttttacatcttaattatgtccgtcatttttttcttcacaaacacctaggcaaaatcatttggcaagctttactaccacaagcaatgaaatgcaagttggctggtcagttttacgaactcgaattccttgctgagctagaaacttcgcatgacacagcatagtttcttggaaacataaggagagcacaggaaattggaatatgcaggacatctcacggatgcactcaaaatcatatctaccaattggcagaggcgacgctagactttggcatgaaggtcttcccagttcccaatgaacttgtaggcaattgcaagcctgacatttgtggcatcctgttgctatgctttttgggttgtaatgtattgcttcccttgctttgaacaatgaacaagtcacacgagctttctttgatctgaagcatctcttgctgtcaaagcataggtgttggctggtcacctgctatggcttttagccagataagagcaagttttacagaaggggtaattgtcacatttaattttattcatgtaagataagagaacatctaattttattcaaagtagtcgtaatctgtgtaattagttatttttaagcctatatttaatacttcatataggtgttcaaacgtttgatgtgatagggtgt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0498600, RefSeq:Os09g0498600