Os09g0498800

From RiceWiki
Revision as of 07:30, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0498800| Description = Protein of unknown function DUF246, plant family protein| Version = NM_001070104.1 GI:115479950 GeneID:4347473| Leng...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os09g0498800

Description

Protein of unknown function DUF246, plant family protein

Version

NM_001070104.1 GI:115479950 GeneID:4347473

Length

3296 bp

Definition

Oryza sativa Japonica Group Os09g0498800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:19946491..19949786

Sequence Coding Region

19946818..19947095,19947331..19947914,19948172..19948257,19948414..19948481,19948562..19948706
,19949558..19949674

Expression

GEO Profiles:Os09g0498800

Genome Context

<gbrowseImage1> name=NC_008402:19946491..19949786 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:19946491..19949786 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggtcgacccgcgccaggtggtggccgggttcctgaccctgtccatgttcgtcatgctcggcaacatgatcaagcacgaccacttcacccccgtcggcgccggccaggaggagttgggcttggaggcaacaggcatagaatcaaacgaaattaaaattgcagatactactgaaatgactaaggtcaacaaggctggagtggatctcccaaaggagactgctgaggagattagaccctgctggtctaaaccaagatcaaatgttcaggagtctaagggttttgttacattctcattgactatgggccctgaataccacatctcacagattactgatgctgtggttatcgcaagatatttaggtgcaacacttgtgcttccagaaattagaggaaatgagttaggaaagaggcggaaattcgaagacatgtatgatgtggataaattcatgacgagcttggatggagttgtcaaagtagtacattcacttcctaatgcagtgtcttctaagaagccagcagtagttagagtaccaaaccgggtgactgaagagttcatcacgggaaccattgagccgatcttccaaagaaataactacttacgacttgcgactattttctcttcagtaagtttgaaacagaaggagtcgggtaacaaggacttggattcgactgcctgccttgcaatgttcagtggccttcagttgaaacctgaattttcagcagtagccaagcatatgttggacaagcttaaagaaataagcgagaaatccgatgggatggttatagctattgatttacagaccgaattgctagaaaagaagatctgtaagacgaatggaggtgcaagaagaagaggctgttattaccctcaggaagttgtgcacttcctgaagaaggttggcttctctgctgatacaaccatctacttgacggagacatggtggcacaaaagcctggatactctgaaggaggcatttccaaacacttataccaaggatgatataatgccggccgctaacaaaggcgagttcctgaaatccggggattcataccttgcaagagcactggacctcaaaatctgctcggagagcgacgtgttcgtccctgccatccccggcctgttctacggacatgtcgccggtaagaggatcgctgcaggcctgacaaacatcatagttcctgctccagtgtccagcagttcagctctggcttcagagttcgtctccacatacgtgtccaagaagagccatcttgcctactcatgttactgctag</cdnaseq>

Protein Sequence

<aaseq>MAVDPRQVVAGFLTLSMFVMLGNMIKHDHFTPVGAGQEELGLEA TGIESNEIKIADTTEMTKVNKAGVDLPKETAEEIRPCWSKPRSNVQESKGFVTFSLTM GPEYHISQITDAVVIARYLGATLVLPEIRGNELGKRRKFEDMYDVDKFMTSLDGVVKV VHSLPNAVSSKKPAVVRVPNRVTEEFITGTIEPIFQRNNYLRLATIFSSVSLKQKESG NKDLDSTACLAMFSGLQLKPEFSAVAKHMLDKLKEISEKSDGMVIAIDLQTELLEKKI CKTNGGARRRGCYYPQEVVHFLKKVGFSADTTIYLTETWWHKSLDTLKEAFPNTYTKD DIMPAANKGEFLKSGDSYLARALDLKICSESDVFVPAIPGLFYGHVAGKRIAAGLTNI IVPAPVSSSSALASEFVSTYVSKKSHLAYSCYC</aaseq>

Gene Sequence

<dnaseqindica>2692..2969#1873..2456#1530..1615#1306..1373#1081..1225#113..229#ctgacctcgtgcttgtcctctgggtctctgtccccctcatctctctcctcctcactctcctcggctgctctcctcctctgtcggtggtgcactgcttgctcgatcctctgcaatggcggtcgacccgcgccaggtggtggccgggttcctgaccctgtccatgttcgtcatgctcggcaacatgatcaagcacgaccacttcacccccgtcggcgccggccaggaggaggttcgtgcttcttgattccttccctttcccgtggagatctctctcgtctttagctaattgctcttccaggttcttggtctctgcgtgaggaattctttctttcgctgttgatttagctcactctctttgtccgggtttctttggttcggagagtagttcagatgaagggatttagtagctgttcgtgttgatttggctcgccggtggaatgcaggagtgtgattatgatttgggtttctttgtttttgttttaattcttggataattgcaagcgatctgtggatctagtggtgaaggggatcttgaacgtcttgtgaccttgactttcattaggggttaactggggtttacattaattattacctactagtcgatcagcacgttgtctgcagtcaaaaaagaatccgaagctcgataaccgtgaagaatagcactaaattatatgccttcagccttcctaaagaaaggctagttggtgggggacacatcatcagtaaagagagcatcaattgcaaagatgaaaccaaaggaggaaatacagtacatcgtttttaatctctttggatagtgatagttatcattatgaacttgatatgacagagagagctcagtctctccaggaagcaaatcatgtgcgattgtgtcatgagcttacttgttctgattcttgtatgcaaatcattgatgtgccagatttttggaatcttttactacagtgttcattttgtccaatgctcaactggtatgagtcaattgacactgtcccaagcttccagtgatgaacgattcttttgaactgactaaatttaaactgggcattatatgactgaccccaatttgaaaaccaacagttgggcttggaggcaacaggcatagaatcaaacgaaattaaaattgcagatactactgaaatgactaaggtcaacaaggctggagtggatctcccaaaggagactgctgaggagattagaccctgctggtctaaaccaagatcaagtaagtaaaatatattcttgacaagttctttagatcccaactcttgagtcttgacacattggcacttgtaatttctgcagatgttcaggagtctaagggttttgttacattctcattgactatgggccctgaataccacatctcacaggtgagcttgcaactcagagctcatatgtatagttaattactatatgtaagaaaaacaagttttgtgtctgcatattctgtttgattgaattgctggaaccccgcttgaaattttcaggaccatggtttttcttactgaatatacttctgtctgcagattactgatgctgtggttatcgcaagatatttaggtgcaacacttgtgcttccagaaattagaggaaatgagttaggaaagaggcggtatgtttcattgctagaaccttacacttttcccccctcaaaactgcacaaggctatcggctattgctatcttgtattcatatttactttagatatactgaagaatttcaaaactacaagcttttcttttccaatttataaaatcttccacaatttgtttacaattcctttcatgaattcattaaaaaaaacgtttcttctataaacatgaaaaagatgtcattcatttgcactaatgatataaggaatatacacaggaaattcgaagacatgtatgatgtggataaattcatgacgagcttggatggagttgtcaaagtagtacattcacttcctaatgcagtgtcttctaagaagccagcagtagttagagtaccaaaccgggtgactgaagagttcatcacgggaaccattgagccgatcttccaaagaaataactacttacgacttgcgactattttctcttcagtaagtttgaaacagaaggagtcgggtaacaaggacttggattcgactgcctgccttgcaatgttcagtggccttcagttgaaacctgaattttcagcagtagccaagcatatgttggacaagcttaaagaaataagcgagaaatccgatgggatggttatagctattgatttacagaccgaattgctagaaaagaagatctgtaagacgaatggaggtgcaagaagaagaggctgttattaccctcaggaagttgtgcacttcctgaagaaggttggcttctctgctgatacaaccatctacttgacggagacatggtggcacaaaagcctggatactctgaaggaggcatttccaaacacttataccaaggcaagaaaactctttcaccaattttttagtttgtatgaatcatcatccatcttctccccccaacaaaatttactgaatgctacactgaaaagctattcatagagaaacacacttaaagttcagactgaatttgatcgttggcttgtgattccaacttgtgacatacatcagtttttttttaataagtataaaccgagctggcggaattcttgacacatagttatcattcttgcaggatgatataatgccggccgctaacaaaggcgagttcctgaaatccggggattcataccttgcaagagcactggacctcaaaatctgctcggagagcgacgtgttcgtccctgccatccccggcctgttctacggacatgtcgccggtaagaggatcgctgcaggcctgacaaacatcatagttcctgctccagtgtccagcagttcagctctggcttcagagttcgtctccacatacgtgtccaagaagagccatcttgcctactcatgttactgctagtactgttcttatatcatcagcatcagcatcagcatcaataagttcaactgaagtgagttgcttggccaagctttgggtacatatgtaagtccttttgttgtatactagttcatgatgttgtgaggaacagtatcatttatgtgttacttaattgttgttgataacaaaaggagagaagcacagaattagtgtgctgaaaaaaaaaggacactagattaggcatgtggaaagagtgtgtgcttcatgtactaccaagttatggttcatcagctggaaattactccaaaatactgcttccatagaagatgtgatgtgtgaaattctctt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0498800, RefSeq:Os09g0498800