Os09g0528800

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Revision as of 07:33, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0528800| Description = RabGAP/TBC domain containing protein| Version = NM_001070274.1 GI:115480290 GeneID:4347651| Length = 4669 bp| Defin...")
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Gene Name

Os09g0528800

Description

RabGAP/TBC domain containing protein

Version

NM_001070274.1 GI:115480290 GeneID:4347651

Length

4669 bp

Definition

Oryza sativa Japonica Group Os09g0528800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:21548055..21552723

Sequence Coding Region

21548398..21549631,21549893..21549946,21550475..21550524,21550700..21550835,21552446..21552711

Expression

GEO Profiles:Os09g0528800

Genome Context

<gbrowseImage1> name=NC_008402:21548055..21552723 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:21548055..21552723 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaaggcgctgcggcgatccagcacctcgtcctccccgtcgtcgtcgtcctcgtcgccgacggccgcgtcgtccccgccgtcctcgtcgtggatccacctccggtcgctgctcgtcgccgcggcgtcgtcgtcttcgtcggcgtcgtcgtcggcggcggcgggaagctccgtggccatggtgtccgcttcggcgcccgccgcgtcgtcgtcgccgtcgccgtcgccagcgcccgcccccgcgccgtcctcgccgcactcggatcggggtggaataaagtctccatggtctcgaaggaaaagaaaacgagtactttctcgtcaacaatgggaaggtctgttttctgctaatgggaaacttcgtgatcgaggaaagaagtttctgaagaaagttcgcagcgggggcattgaaccaggaatcagggctgaagtttggcccttcctgctaggagtctatgatttaaatagcacagaagacgaaaggaataccatcaaaatcaagaaaaggaaagagtatgaaaagttgaggcgacagtgccagcaaattctgaattgttacaagggcaatgggctgaaagtaataaatgaaaataatgaggagtgttctggtatagagtttagtgctgaaggatcagaatcaccttgttttgaagatgtcaatattgcaagggcttctgtgtcacatgaggagctgaaacctgaatccgagcctgagcaaccagataactcaatgtgtgctgttacagaatgtatggaagaagacacgggtgaattaatttgtttagatccttgcatagcagagtcagaatcttctgattctgaatcatctgatgaagatgaccctggaaggatatcgatgtctggtgaggaaaattgtgatccagatcctaaatttaccaggactacttcattcaaggcagacttttttaagtctagcaagacttcagaggattttgccacgtggcaacgcattataaggttggatgctatccgagcaaacacagaatggattctgttctctcgcaaccaggccgaaatttctagagagagagctttgcagtgtgcagaatctgttgggttaagagattatgaccatttagatcccagtatgatttatcatgctgctcgattagtggggcttcttgaagcatatgcggtctatgatccagaaatcggttactgtcaaggtatgagtgatcttttatctccaataattgcagtgatggaggaggacgatgaagcattttggtgctttgtgggtttcatgaggaaagccaggcacaacttcaggcttgatgaggttggaataagaaggcagttgaagattgtctctcagattatcaagcgaaaagattcgcacctgtacaagcacctgcagaagctgcaagctgaggactgcttctttgtgtacagaatggtagtggttctcttcaggagggagctcacctttgagcagaccgtatgcctttgggaggttatgtgggctgatcaggcggcgattcgcgctggtattgggagatccacctgggcaaaaataaggttgcgtgctccaccaaccgacgacttgttgctttatgccattgcggcttgcgtcctccagaggaggaagctgataatcgagaagtatagtagcatggacgagatattgcgagaatgcaatagcatggctgggcaactggacgtctggaggctactcgacgacgcacacgacctggttgttaacttccacgacaaaatctga</cdnaseq>

Protein Sequence

<aaseq>MKALRRSSTSSSPSSSSSSPTAASSPPSSSWIHLRSLLVAAASS SSSASSSAAAGSSVAMVSASAPAASSSPSPSPAPAPAPSSPHSDRGGIKSPWSRRKRK RVLSRQQWEGLFSANGKLRDRGKKFLKKVRSGGIEPGIRAEVWPFLLGVYDLNSTEDE RNTIKIKKRKEYEKLRRQCQQILNCYKGNGLKVINENNEECSGIEFSAEGSESPCFED VNIARASVSHEELKPESEPEQPDNSMCAVTECMEEDTGELICLDPCIAESESSDSESS DEDDPGRISMSGEENCDPDPKFTRTTSFKADFFKSSKTSEDFATWQRIIRLDAIRANT EWILFSRNQAEISRERALQCAESVGLRDYDHLDPSMIYHAARLVGLLEAYAVYDPEIG YCQGMSDLLSPIIAVMEEDDEAFWCFVGFMRKARHNFRLDEVGIRRQLKIVSQIIKRK DSHLYKHLQKLQAEDCFFVYRMVVVLFRRELTFEQTVCLWEVMWADQAAIRAGIGRST WAKIRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEILRECNSMAGQLDVWRLLD DAHDLVVNFHDKI</aaseq>

Gene Sequence

<dnaseqindica>3093..4326#2778..2831#2200..2249#1889..2024#13..278#gggagaggggacatgaaggcgctgcggcgatccagcacctcgtcctccccgtcgtcgtcgtcctcgtcgccgacggccgcgtcgtccccgccgtcctcgtcgtggatccacctccggtcgctgctcgtcgccgcggcgtcgtcgtcttcgtcggcgtcgtcgtcggcggcggcgggaagctccgtggccatggtgtccgcttcggcgcccgccgcgtcgtcgtcgccgtcgccgtcgccagcgcccgcccccgcgccgtcctcgccgcactcggatcggtgggttttctccctctccttcggattggtgaaaaggaggagtaaaaatgactccttttttagtcctttccttttgggggcgtcttgatctgcttcccgtggagtctagcctcacatgttctgatctaattggtggtctggaggctgcttaggtgctcatgttatggtttttttgtgcgcctcaatccaaccaagtctttggatttcagcttaagagtgcagtaaaacgttagagtgacagcctggcttaattgtgtgcctagcaattcctgcctcgtgcaggaaggttgcggggcctgcaatccaaactgaggacaccggatttttaagagcgaatcgattatgtgttcaatctgttgacatgatagtgggggagattcggtttgttgattcagagagatcatggattctgttgcagagtggtttgcttactctaaaggtgccttccgtctaagttctagtgtgataagattttgtcatagtttagtggcagcgttagtgctgaatgcagcttgcacaattgcctcaagatatgttgatgatgtgatgctgttggtggtttgaacaagggacagcttgctgctatcttgaattatgtgctttaggttgttggatggcatggtatttaagaccttggaggtgatcctgtcccctaaggtagcaaatttagtttctaagaataatagggggggtgcttgatgtttccttttggtttgggagtgaagctgtggcactgtaaatgctacctaaaagtttggatcttccatgagttgaacaattttgctgacctgaataggtatcaccgtaaatcacaagagtttttagatgatacacctccagttttcctgtgatctgctcttgttccgtagttatctcttgtcaagtttgctttcaacttatttgttcactgatctaggtattatattgaactgcatgttgactataacgattcctttttgtagcccaggtcctcagataactcataactatgaatcattgcctagaaaatcgttttatgtggtcatcttttcttaatccaattaccaagttcaataccatcaatttttttcactagcgtatggtgttagggaccctgtttcatccacagattccatagtattgtctgatttatgcctcttgatcgatgtatgtattattcagctatgtagttttgtttagataatggataaaattgtatggttagttcaaaatatggtagaccatactgcttgattaagaatcagttcatgctgcgcataacgaatgtatccttgacgctgcacaattatgttcttaacagcactttgaaacaataactaggaggaagtttttcagtatcacgtttgtttcgtaaactaattaataccttaatatctgtctattttatgaatttgttttatatccaaccttttcgtgtgcatacaaattatatgtgaagttggatttatgaggactcaaagcattccctcttcggatgctgtagcttagagagtgtgttaaagatggtactattagttagtctgtcagttggtatggcagtgttatcttttattgatccatatcttccttgttgctccactttctaaaactattctttaatcttctttcaggggtggaataaagtctccatggtctcgaaggaaaagaaaacgagtactttctcgtcaacaatgggaaggtctgttttctgctaatgggaaacttcgtgatcgaggaaagaagtttctgaagaaagttcgcagcggggtaagtttgattatctatttgtttagatgtcctgcatatgtttacaagaatacttgcctattgttttgtttgttcaaagatttagacatatatagtagtgatattgaaagcatgttctgcatcttactccgtacagtctaattaatatactggccttttttttctgttgtgtcagggcattgaaccaggaatcagggctgaagtttggcccttcctgctaggagtgtgagttttttaatctcttctatgcatctagtaattcataagctttcgtttctttgaccaagtttgaggtcgcaactacatacacgtagacttcctatagcacctaattggttatgtgaccacatggagtgtgcatgttttgtgtagctctacgggacggctccgattcatggactagggtccttccttactgtttcccataatgaaaaggtttaggattatcagttagagaagatagttcttcatggcaatataatacaccattcttagtatttgaatccaggataattaataccttcatactacctctgtcccaaaaagacttcatttctcagttcttgtccaggtgcatagccagaaatgaagtctttgtggggcagaggtagtaacatcttttccagtttggttttggttgatgtgataaattgtatggttgttgtcataaagtctgttcggattgttgtgttgtgtttaatgtattctgtcttcaaaccaagagagattgacgctgtcaattcttatgtgcagctatgatttaaatagcacagaagacgaaaggaataccatcaaaatcaagaaaaggtattatattcattgctctgaaaggctgttcaatttaagtaggattgaaacattttgctcaatgtgctgtgtttccatcaagctacactaaaagcccaaccactaatatgtaacatagcagaagatccccaagtagtttcagaacatcaatattgttattttgcaatggcctaaagaaaatgagactatgatattctaaatgcgaccaatataatttctaatctgataagaacttgttgattgatgtggcttttggttcaggaaagagtatgaaaagttgaggcgacagtgccagcaaattctgaattgttacaagggcaatgggctgaaagtaataaatgaaaataatgaggagtgttctggtatagagtttagtgctgaaggatcagaatcaccttgttttgaagatgtcaatattgcaagggcttctgtgtcacatgaggagctgaaacctgaatccgagcctgagcaaccagataactcaatgtgtgctgttacagaatgtatggaagaagacacgggtgaattaatttgtttagatccttgcatagcagagtcagaatcttctgattctgaatcatctgatgaagatgaccctggaaggatatcgatgtctggtgaggaaaattgtgatccagatcctaaatttaccaggactacttcattcaaggcagacttttttaagtctagcaagacttcagaggattttgccacgtggcaacgcattataaggttggatgctatccgagcaaacacagaatggattctgttctctcgcaaccaggccgaaatttctagagagagagctttgcagtgtgcagaatctgttgggttaagagattatgaccatttagatcccagtatgatttatcatgctgctcgattagtggggcttcttgaagcatatgcggtctatgatccagaaatcggttactgtcaaggtatgagtgatcttttatctccaataattgcagtgatggaggaggacgatgaagcattttggtgctttgtgggtttcatgaggaaagccaggcacaacttcaggcttgatgaggttggaataagaaggcagttgaagattgtctctcagattatcaagcgaaaagattcgcacctgtacaagcacctgcagaagctgcaagctgaggactgcttctttgtgtacagaatggtagtggttctcttcaggagggagctcacctttgagcagaccgtatgcctttgggaggttatgtgggctgatcaggcggcgattcgcgctggtattgggagatccacctgggcaaaaataaggttgcgtgctccaccaaccgacgacttgttgctttatgccattgcggcttgcgtcctccagaggaggaagctgataatcgagaagtatagtagcatggacgagatattgcgagaatgcaatagcatggctgggcaactggacgtctggaggctactcgacgacgcacacgacctggttgttaacttccacgacaaaatctgatctgagggatgcgtttctctttgttcttgcggtagaacaaatatagacctcgacattttttttttttgggggggggggggggggtttctttgctgcttgcagaaaagtgttatgttccctgtagctcgtaccggcatagaacattagaacccacttctaagtatagagattgttgtaacttaaaaagagtgaggactcgagtgttcctcacacacgaagatcagcaatactgcttgatgttactgaggctctgcagactactactattcattgtttaacctgttataggcacggacagatttttcattgaaaggtatatctgtgtatgcctgtatggtctgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0528800, RefSeq:Os09g0528800