Os09g0543400

From RiceWiki
Revision as of 07:34, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0543400| Description = Similar to Ornithine decarboxylase (EC 4.1.1.17)| Version = NM_001070362.2 GI:297609893 GeneID:4347746| Length = 122...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os09g0543400

Description

Similar to Ornithine decarboxylase (EC 4.1.1.17)

Version

NM_001070362.2 GI:297609893 GeneID:4347746

Length

1227 bp

Definition

Oryza sativa Japonica Group Os09g0543400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:22240913..22242139

Sequence Coding Region

22240913..22242139

Expression

GEO Profiles:Os09g0543400

Genome Context

<gbrowseImage1> name=NC_008402:22240913..22242139 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:22240913..22242139 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcaggccgtgctcatggcccccggcgtcaaggacaagaaggtgctcgccttcaagcgcggcaagggcaaggacgccgacgccggcgtcacggcgctcatccgcgacatcgtcgccggcggcgcccggagcgcgttccacgtcttcgacctcgccaaggtcgtcgacctccaccgcgggtggcgccgcgcgctccccgacgtgcgcccctgctacgccgtcaagtgcaaccccgacggcgccatgctcgccgcgctcgccgcgctcggcgccggcttcgactgcgccagccgcgccgagatcgaggcagtgctcgcgctcggcgtccgccccgccaccatcgtctacgccaacccgtgcaagcccgaggcgcacctcgagtacgccgccgaggtcggcgtcaacctcaccacctacgactccgaggaggaggtggccaaggtccggcgatgccacccgcgctgcgagctgctgctccgcatcaaggcgcccgactccggcgacgccaaggtcgacctggggctcaagtacggcgccaacccggacgaggtgctaccgctcctccgcgccgcgcagcgcgagggcgtcgccgtcgccggcgtctccttccacgtcgggagcggcgcgtcccgcgccgacgtctaccgcggcgccatcgaggcggcgcgcgaggcgttcgacgccgcggcggcgctcggcatgccgccgatgcgcgtcctcgacatcggcggcggcttcatggccggccggaccttcgacgaggcggcggcggtcatcaaccgcgcgctggagcgccacttcggcgacctcccctgcgtcgaggtgatcggcgagcccgggcggtacttcgccgagacggcgttcaccctcgccgcgcgcgtcatcgggaagcgcacccgcggcgagctccgggagtactggatcgacgacggcctctacggctccctcaactgcatcctcatggaccactacgtgccgcgcccgaggccgctcgccgccgccgccgccggcgaggacacgacggcggcgacgacgcacgcctcgacggtgttcggcccgacgtgcgactccctcgacacggtggtcaccggctaccagctgccggagatgagcgtcggcgactggctcgtgttcgacgacatgggcgcctacaccaccgcggctggctccaacttcaacggcttcgccacgtcagcgataaagatccacctggcatactccagctag</cdnaseq>

Protein Sequence

<aaseq>MQAVLMAPGVKDKKVLAFKRGKGKDADAGVTALIRDIVAGGARS AFHVFDLAKVVDLHRGWRRALPDVRPCYAVKCNPDGAMLAALAALGAGFDCASRAEIE AVLALGVRPATIVYANPCKPEAHLEYAAEVGVNLTTYDSEEEVAKVRRCHPRCELLLR IKAPDSGDAKVDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASRADVYRGA IEAAREAFDAAAALGMPPMRVLDIGGGFMAGRTFDEAAAVINRALERHFGDLPCVEVI GEPGRYFAETAFTLAARVIGKRTRGELREYWIDDGLYGSLNCILMDHYVPRPRPLAAA AAGEDTTAATTHASTVFGPTCDSLDTVVTGYQLPEMSVGDWLVFDDMGAYTTAAGSNF NGFATSAIKIHLAYSS</aaseq>

Gene Sequence

<dnaseqindica>1..1227#atgcaggccgtgctcatggcccccggcgtcaaggacaagaaggtgctcgccttcaagcgcggcaagggcaaggacgccgacgccggcgtcacggcgctcatccgcgacatcgtcgccggcggcgcccggagcgcgttccacgtcttcgacctcgccaaggtcgtcgacctccaccgcgggtggcgccgcgcgctccccgacgtgcgcccctgctacgccgtcaagtgcaaccccgacggcgccatgctcgccgcgctcgccgcgctcggcgccggcttcgactgcgccagccgcgccgagatcgaggcagtgctcgcgctcggcgtccgccccgccaccatcgtctacgccaacccgtgcaagcccgaggcgcacctcgagtacgccgccgaggtcggcgtcaacctcaccacctacgactccgaggaggaggtggccaaggtccggcgatgccacccgcgctgcgagctgctgctccgcatcaaggcgcccgactccggcgacgccaaggtcgacctggggctcaagtacggcgccaacccggacgaggtgctaccgctcctccgcgccgcgcagcgcgagggcgtcgccgtcgccggcgtctccttccacgtcgggagcggcgcgtcccgcgccgacgtctaccgcggcgccatcgaggcggcgcgcgaggcgttcgacgccgcggcggcgctcggcatgccgccgatgcgcgtcctcgacatcggcggcggcttcatggccggccggaccttcgacgaggcggcggcggtcatcaaccgcgcgctggagcgccacttcggcgacctcccctgcgtcgaggtgatcggcgagcccgggcggtacttcgccgagacggcgttcaccctcgccgcgcgcgtcatcgggaagcgcacccgcggcgagctccgggagtactggatcgacgacggcctctacggctccctcaactgcatcctcatggaccactacgtgccgcgcccgaggccgctcgccgccgccgccgccggcgaggacacgacggcggcgacgacgcacgcctcgacggtgttcggcccgacgtgcgactccctcgacacggtggtcaccggctaccagctgccggagatgagcgtcggcgactggctcgtgttcgacgacatgggcgcctacaccaccgcggctggctccaacttcaacggcttcgccacgtcagcgataaagatccacctggcatactccagctag</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0543400, RefSeq:Os09g0543400