Os09g0545000

From RiceWiki
Revision as of 07:34, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0545000| Description = Sodium/hydrogen exchanger family protein| Version = NM_001070369.1 GI:115480480 GeneID:4347753| Length = 2864 bp| D...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os09g0545000

Description

Sodium/hydrogen exchanger family protein

Version

NM_001070369.1 GI:115480480 GeneID:4347753

Length

2864 bp

Definition

Oryza sativa Japonica Group Os09g0545000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:22376004..22378867

Sequence Coding Region

22376143..22377459,22377529..22378695

Expression

GEO Profiles:Os09g0545000

Genome Context

<gbrowseImage1> name=NC_008402:22376004..22378867 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:22376004..22378867 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtggatcggccgtgaattgcgccgtgcagaacgtgtccctggacacgctcttcctcatcgtcatccagggcgccgccgtcatcgtgctcggcaagttcatccacctctccctccggcgccacaacctgcccagcgccatctcccagatcgtcgccggtgtcgccgtcggcagcctgggcctgcacgacatggtcgtccacgtcgaggtccagaacgtggaggacacctacgggtggtacgtctccgaggcccgcatcttctacatgttctacgtcggcctcgacgccgacctcgccgcgctctggaacgacgcgcaccgctgcaccgtcgtcacgtacgccagcgtcgccacctgcctgctcctcgccgccttcgtctccggcggcatctacggcagcatgatgcacaccccggtcaggtcccccgagctgctctccgccgtgctcatgctcacgctggccaacaccgcctccgtcgacgtctccaggatggccgccgagctcgacctcacggccacgggcggcggccggctcgccgtctccacggcgatcgccaccaacatcatctgcatcgtcggggagggggtgttctcgtgcatgaagctggcgtcgagcaggacgccggggtacagcgcgtcggagcggctggggatgggcgtgctcgcgctgctcaaggtgggcgtcaccatggcgctgctccggccggtggcagcgtacatgaaccggcgcaacgccgggcgccaccgcatcgggaactgggagctggtgctgctgctcgtcgccgtctccttcgtcggcaacttcccggagcacgccgggttcgacggggtgccggcgagcctcctgctggggctggcgttcccgagggaagggcccgtggcgaggagcgtcatggacgccatcgcctacccgctccacgccctggcgctgcccttctacttcggcgccatgggcatgaggatcaacttcggcgccatgtccggcgccatcgtcgtgcccgccgtcctcctcacgctgctcggcctcttcggcaagtgcgctggcaccatggccgccgccaggtacctcaagatgccgctcgccgacgccatccgcctcggcgtcctgctcaacatcaagggccacgtcaacatgatcgacatgagcttcgctagctcggaagggatatgggcggagcaggcgctcatggcgatggtcgtcggcagcatcataagcaccgtcgtcgccgggccggtgttcgccgtgctgttccggaaggagaaggaggcgtacgcgtgcagcgaccaggcgctcgaacacatggcgccggacaaggagttgcgcatgctcgcctgcgtgcacggcgcgcgcggcgcgccggcgatgctcagcctcctcgagctcctggcgacgacgccccgcgcgcagcccaccatccacgtcctccacctgttcgacgccagccgcaagcacgtcggcccgaagcgctaccaccagcgggtccaggacagcgacaagcacattgaccgccgcatcgacgacgccacgcaggtgaactgggccgtcgacgtgttcacctccgtcaccggcctcgccatccgccagttcgacgtcggcgaccgcggcgccgccatgaagaacgcgaagaacatccaccgccgcttggaggaagtccgcgccgggctcctgttgttgccgtaccacaaggagcagcgctacgacggcaagatggtctgccggcgagacgaccgctgcgagctcaaccgcaaggtgctcgagctcgccccgtgcaccgtcggcgtcttcgccgaccgcccgttctggaggggcggcgccagcttccggctgccgaccaagatatcaacgagcgaggagacgacggcggcgaggaaccaaggcgaccagaaggcggggacccagatcgccgccgtcttcctcggcggccccgacgaccgggaggcggtggcgttcgcgtgccgcctcgccaagaacgacggcgccatcaggctgaccgtcatccgcctcgtgctaggcgtcgccaccaacgatgaccaccgcatcccgacgacgagcgccgccaatcacatcggcatctacgacgacgacgacgaggacggcggcgaggaggaggtgctgtccgtggtggttcaagacgacgaccccgacgagcggtgcgtgtcggagctgcggcgcgagtacgtggcgaaggagcgcgcggagtacgtggagagggcggtgagcggggcggtggacgtggcggcggcgttgcgcgcgacggcgggggcgttcgcgctcgtggtggtggggcgcggcgggcggcagccgccggagctggtggtggggctcgaggggtgggtccagatgatcgagtacccggaggtgggcccggtcggggagatgctcgcgtcggaggagtcgctggagatgggctccgtgctcgtcgtgcagcagaggacggcgccgccgccgccgtttcatctcaacattccgccggcgatctga</cdnaseq>

Protein Sequence

<aaseq>MGGSAVNCAVQNVSLDTLFLIVIQGAAVIVLGKFIHLSLRRHNL PSAISQIVAGVAVGSLGLHDMVVHVEVQNVEDTYGWYVSEARIFYMFYVGLDADLAAL WNDAHRCTVVTYASVATCLLLAAFVSGGIYGSMMHTPVRSPELLSAVLMLTLANTASV DVSRMAAELDLTATGGGRLAVSTAIATNIICIVGEGVFSCMKLASSRTPGYSASERLG MGVLALLKVGVTMALLRPVAAYMNRRNAGRHRIGNWELVLLLVAVSFVGNFPEHAGFD GVPASLLLGLAFPREGPVARSVMDAIAYPLHALALPFYFGAMGMRINFGAMSGAIVVP AVLLTLLGLFGKCAGTMAAARYLKMPLADAIRLGVLLNIKGHVNMIDMSFASSEGIWA EQALMAMVVGSIISTVVAGPVFAVLFRKEKEAYACSDQALEHMAPDKELRMLACVHGA RGAPAMLSLLELLATTPRAQPTIHVLHLFDASRKHVGPKRYHQRVQDSDKHIDRRIDD ATQVNWAVDVFTSVTGLAIRQFDVGDRGAAMKNAKNIHRRLEEVRAGLLLLPYHKEQR YDGKMVCRRDDRCELNRKVLELAPCTVGVFADRPFWRGGASFRLPTKISTSEETTAAR NQGDQKAGTQIAAVFLGGPDDREAVAFACRLAKNDGAIRLTVIRLVLGVATNDDHRIP TTSAANHIGIYDDDDEDGGEEEVLSVVVQDDDPDERCVSELRREYVAKERAEYVERAV SGAVDVAAALRATAGAFALVVVGRGGRQPPELVVGLEGWVQMIEYPEVGPVGEMLASE ESLEMGSVLVVQQRTAPPPPFHLNIPPAI</aaseq>

Gene Sequence

<dnaseqindica>1409..2725#173..1339#aatcaccacccaaacgaacgaacgaacgaccgaccagagagaggagatctccaccctcctcaacaccgcacatcccgccgcgttggaggctgcagctgcagggccaccgtctcctccgccgcacgttcgccagccgttggcattcggccggcgagccggcgagccggctggcatgggtggatcggccgtgaattgcgccgtgcagaacgtgtccctggacacgctcttcctcatcgtcatccagggcgccgccgtcatcgtgctcggcaagttcatccacctctccctccggcgccacaacctgcccagcgccatctcccagatcgtcgccggtgtcgccgtcggcagcctgggcctgcacgacatggtcgtccacgtcgaggtccagaacgtggaggacacctacgggtggtacgtctccgaggcccgcatcttctacatgttctacgtcggcctcgacgccgacctcgccgcgctctggaacgacgcgcaccgctgcaccgtcgtcacgtacgccagcgtcgccacctgcctgctcctcgccgccttcgtctccggcggcatctacggcagcatgatgcacaccccggtcaggtcccccgagctgctctccgccgtgctcatgctcacgctggccaacaccgcctccgtcgacgtctccaggatggccgccgagctcgacctcacggccacgggcggcggccggctcgccgtctccacggcgatcgccaccaacatcatctgcatcgtcggggagggggtgttctcgtgcatgaagctggcgtcgagcaggacgccggggtacagcgcgtcggagcggctggggatgggcgtgctcgcgctgctcaaggtgggcgtcaccatggcgctgctccggccggtggcagcgtacatgaaccggcgcaacgccgggcgccaccgcatcgggaactgggagctggtgctgctgctcgtcgccgtctccttcgtcggcaacttcccggagcacgccgggttcgacggggtgccggcgagcctcctgctggggctggcgttcccgagggaagggcccgtggcgaggagcgtcatggacgccatcgcctacccgctccacgccctggcgctgcccttctacttcggcgccatgggcatgaggatcaacttcggcgccatgtccggcgccatcgtcgtgcccgccgtcctcctcacgctgctcggcctcttcggcaagtgcgctggcaccatggccgccgccaggtacctcaagatgccgctcgccgacgccatccgcctcggcgtcctgctcaacatcaagggccacgtcaacatgatcgacatgagcttcgctagctcggaaggggtaacgtgtttgcacccgacgtctagcttagccaccacaatggcgccactaatttggccgcgcgtgcagatatgggcggagcaggcgctcatggcgatggtcgtcggcagcatcataagcaccgtcgtcgccgggccggtgttcgccgtgctgttccggaaggagaaggaggcgtacgcgtgcagcgaccaggcgctcgaacacatggcgccggacaaggagttgcgcatgctcgcctgcgtgcacggcgcgcgcggcgcgccggcgatgctcagcctcctcgagctcctggcgacgacgccccgcgcgcagcccaccatccacgtcctccacctgttcgacgccagccgcaagcacgtcggcccgaagcgctaccaccagcgggtccaggacagcgacaagcacattgaccgccgcatcgacgacgccacgcaggtgaactgggccgtcgacgtgttcacctccgtcaccggcctcgccatccgccagttcgacgtcggcgaccgcggcgccgccatgaagaacgcgaagaacatccaccgccgcttggaggaagtccgcgccgggctcctgttgttgccgtaccacaaggagcagcgctacgacggcaagatggtctgccggcgagacgaccgctgcgagctcaaccgcaaggtgctcgagctcgccccgtgcaccgtcggcgtcttcgccgaccgcccgttctggaggggcggcgccagcttccggctgccgaccaagatatcaacgagcgaggagacgacggcggcgaggaaccaaggcgaccagaaggcggggacccagatcgccgccgtcttcctcggcggccccgacgaccgggaggcggtggcgttcgcgtgccgcctcgccaagaacgacggcgccatcaggctgaccgtcatccgcctcgtgctaggcgtcgccaccaacgatgaccaccgcatcccgacgacgagcgccgccaatcacatcggcatctacgacgacgacgacgaggacggcggcgaggaggaggtgctgtccgtggtggttcaagacgacgaccccgacgagcggtgcgtgtcggagctgcggcgcgagtacgtggcgaaggagcgcgcggagtacgtggagagggcggtgagcggggcggtggacgtggcggcggcgttgcgcgcgacggcgggggcgttcgcgctcgtggtggtggggcgcggcgggcggcagccgccggagctggtggtggggctcgaggggtgggtccagatgatcgagtacccggaggtgggcccggtcggggagatgctcgcgtcggaggagtcgctggagatgggctccgtgctcgtcgtgcagcagaggacggcgccgccgccgccgtttcatctcaacattccgccggcgatctgacacgctacatacaaaacgtacaaaaaaaattaaatcagtgtaaggattattatagctgtgtatatttagagcgtggtagaagactagatcaaattttgtattcagtaaaattcggggaaaaagaaacgacgaaatagtt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0545000, RefSeq:Os09g0545000