Os09g0551900

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Revision as of 07:34, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0551900| Description = DNA mismatch repair protein family protein| Version = NM_001070406.2 GI:297609926 GeneID:4347792| Length = 9140 bp| ...")
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Gene Name

Os09g0551900

Description

DNA mismatch repair protein family protein

Version

NM_001070406.2 GI:297609926 GeneID:4347792

Length

9140 bp

Definition

Oryza sativa Japonica Group Os09g0551900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:22700271..22709410

Sequence Coding Region

22707128..22707421

Expression

GEO Profiles:Os09g0551900

Genome Context

<gbrowseImage1> name=NC_008402:22700271..22709410 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:22700271..22709410 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ctcttttattccataacagcaacatccaagtttcataatgtcatggttgatggggaacctagttccagaagttttggattaaatggcgaagcactcgcatcactatctgatatctctgttgttgaagtcaggacaaaagctcgcgggcgaccaaattcatattgcaagataataaaggtagtttacacacttaaccttttaaaagctcagcataatcttgatacatacatccatagcgtatctgaattcttctggcaaatatacagggatccaaatgctcacacctgggaatag</cdnaseq>

Protein Sequence

<aaseq>LFYSITATSKFHNVMVDGEPSSRSFGLNGEALASLSDISVVEVR TKARGRPNSYCKIIKVVYTLNLLKAQHNLDTYIHSVSEFFWQIYRDPNAHTWE</aaseq>

Gene Sequence

<dnaseqindica>1990..2283#agtgtcatttgcccgcctcacctgcactctctccatctctctcctccggcgaaggcgcggcgcggcggcgttctccccccgcctcgcctcctcctcctcgcgcgcgcggccgcggcgagccaggctcggaggcggcggcgttgacgggacgggctcctctcctctcctccccgaccacaccctaccttcgcccccgcgctgcctcctcgcgcgcacggccgggagacaagccaggggcgacgcggccggcctcgctccgctcggctccatctcggttccagtcgaattggaggtatccattctccctctctcagtctctctcctgctgcctcgcgccacctcatgagccggcgtccgcctctgatgctgcggattctgaaatttttggtttacactggtgtccaattcttcaatctcaagttggggtttaatacccgaccacccaaacctagaccgaagggtagatgcaggatcgtactagagattgttgagttgctgcagaatttaacttctggataggtaggtagtttgtgcagtttggaagaggggatggacatttttgggcatgggttacgttagttgtttgtcctagggggaaactgatcgtttgttgggttcgtggtggctactccatcaatgtaagtggaaggatactgtggcttcttacttctattatgttcatggtgcctgctcatttgatctgacatcatgttcacttcttcaagcaacctatctaagtgtacatttgaagtttctggaagaaacttctgatcttgtctactgtttttcttggataagtttcgctgccaacagttgctgattgtactattcccccagaatgcttaaatgcagacaataaaacggttgccaaaaagtgtccatagctcgttgcgctcaagcattgttctatttgacctatcaagggttgttgaggagctggtatataatagcattgacgcaaatgcgagcaaggtattactttcacatacaaaaaggcaaactattatgcatgcagtatcttcagtgacataagttttctttttgattcatttcagattgacatctcagtgaatgccagagcatgttatgttaaagtggaagatgatggtatgcctttatagctttgtaccttatgttttaaatttcttactgctggtatttgcttttagaatagtgtttcctgttgcaactattgcaggctgtggtattactcgtgacgaactggttcttgtaggagaaaaatatggtaagttaaaacttctactattatttatacattttcgtttactccctatactcaaaactgctgtttttgtcatattaaacaatgagggtgcattgttgcaagctccttcacttgttgaagcaggccttatggatgcttatctgatttctctaatgtcagaatagaattattatcttacagaaaagaaaaggtgaatacatgatttgcttagaattagatagtaataatggaaacagtatcattctgtgatatttgacatcgattattgatattgaaagcagatgtgtttattactattttttatcatcagatgtttttattgttattcgtatagattgatggttggtaaatgaaatcactgtgttgtttttgctgctgatgtcacccagtgatgctttatgcaaatcatcattaggtgcataaggatttcaagacaatatatctttgatttctcacttatgggtcatgagaagttagttgcattaatacctgttggcaggtgtgaatttactattttgtttattatgcttattcaccgtttctttgcaaccaaatatattttgatgtgctgtcctcagggtaaaaaagaattagttgtcagtgggtaggattatagaaacccctttatttaaacttttgtatcttgttagattcattcttttttaagacgtgttaaatgtatatccaccaccttaattacagtaaccattcactcttgttttcaatgcgctaataatgtataactcttttattccataacagcaacatccaagtttcataatgtcatggttgatggggaacctagttccagaagttttggattaaatggcgaagcactcgcatcactatctgatatctctgttgttgaagtcaggacaaaagctcgcgggcgaccaaattcatattgcaagataataaaggtagtttacacacttaaccttttaaaagctcagcataatcttgatacatacatccatagcgtatctgaattcttctggcaaatatacagggatccaaatgctcacacctgggaatagatgagcagagggaagttgttggaaccacaggtacatttttactctacatttaaagatcaagaaaataaaattttactctagtcgtgtattcatgtgtggtatatttacattttttgccatgttatataagctacgtatcgtaatgtttttcatttttgtgtagttattgttcgcgagcttttttacaatcaacctgtacgcaggaaacaaatgcaatctaggtaaatcatgttatctttttcatctgtacatgtttcttacaattcacaattttgttggaaagaagatttgattgtctttctcaacattatgtttttgtagttacaaaagagaactacatcttgtgaagaagtctgttctgcgagttgcactcattcatccacaagtttcactcagactttttgatattgagaggtagtctattgtgctacactagccatttttattttaccaataccgcgtgagaaagtgtatctattgacatatcttttttatgtatgtagtgaagatgagttgctatacacgattccttcatcctcccccttgcctcttgtatcaaacattttggggaaaaatgtctccagctgtcttcatgagatagctacctctgacaagcattttgctctttcagggcacatctccagaccaacagatgtgttctgtaataaggtaacatttatcatataagttgtgggttgttgaacaaaagtttggcaacatgtattcagcaaagtgtgtttttcctctgtaggatttccagtacttgtgtatcctacaatccagttcttcactgtctatttccatagtttcacataccatttttctgaaagcttgagttgggagatatccttgactttccaaagatatcaactcaagattcgtcagtaaaagcccaatccacaatatgctcaataacctggcatctagttttcaatcttctgcaaggaatgaggaaattgatgttcggagtaagaagaggcagaagaatgaagtctaccctgcatatctgctaaacttgtgctgtcctagatcaagctatgatctacattttgagccttcacagactattgtggaattcaaggtgatccattacacatttatgctttttaattccccttctttttctggtaaagcttcatatgtaaacaactgaccggataaaagtggtttgggcttttttttttttttgggggggggggcatgttgatttgtaccttcatttctatttattttaaaagcaaattttctttcttatagcttgacattcatttcccattcttttttatggtttttctactctttaggattggcaaactgtcatgtatttctttgaacgaactatcacagactattggaagaagcatgcacctcaactgccagaaggttagaaaaatatttacttccgtaatgatgtcttccctgaacaattttgaagtctagaagctgttgattgaatgattttcttattgttatccttttctattgtagtgaaagctattggcaatgatacctgtgtgcctttggaaagagatggtcagtgatttagtgtacacgattctcttcctcttttgattcgtctgccttgtgagctttgtgcacgtgttgtttttgcagtgaaatcaagtcaggaactgttaaggcgtcatggtgtgcagaagaaagaagatgtcgctgaattgtaccaaacagctctgcagaagaatacagtacgagacatgaattttgatacagctgccccagcagaacctaaagacaattacctttctttggatatggagccatccacatggcgtgcctgctatgaccagatcagtgatgcatcccacacagatgatgttgctaggaatggtcggaaatttggtcataagcaaatatgttcccttcaaagttatagttatcagtggttagaggacggctcttccctgttagaagactctgatctttcaagtgctaacccaactatttgtaaaatgcaaaagacagaagatatattccatgggcatgcatattctggtaagtttggactgctacaagatgcagaaatcgaaatcggtccagaaattaaactccaagaatattgctttgaatctcccaataaaccgaacagaatgacctgcgattttgtgcaaaagcaaaccaatatagaggcacacatttcaggccgtgatggattctatgttgattttgataaattgaacgaggactgtctactcaatgagatatcaaagacaatcactgatgtttcctgccctcaaatgccacactttaatgatggactctgtcctgaggacgttggctcctccaagagttcctgtagtgtcaggaaaaagtctagtaaaaggcaaaatagtgctaatgcaattgcccagatgaagttccatgatatgcaagcagtttgcgaaagtgattacatggataggtccttcatcaaggatacatgtggccttcatttctttcatccattctcgttggctgatacacctcgcagtcacagtcgtgcaaggattgacttggaattgcatggaaggtcaaatgaaagcattaacagttggaactgtgaaaatattggcactgattttggatttacttcagacaggtttaatattgattcatcaatgatttttgaaggaagcaaacatctcaataactttggcaatggaactcaatctcctagttacttcaatcatgaatattgttctgtcggtcagtttgcttccaaacaggatcggatacccttgaaatcaaaacatgatgcaagaatgtcatatgatatttctcctgagaaaagttctactggttgtcatttgaatgtttctttttcccaagtggcaaaaagcagcaagcttactgaagatcagtatggatgcagtcagaggcccaggctttccagaggtagatataggagtcgttctgcaccaccattttacagaggcaaaagaaaattccctagattaaacgaaccactaaccaaattgactacagaaggtggtaaatataccactgttaatgactcaggaggtacgtcttctcagagccatggcaaatctttatactgctctgtcatgagcaataagtttgtatcttttatactggatgcagatatcacacctgttcaggagtatacatcacatatgaacgcaacccaacctattcctgagacctttagcaatgacttttctgacctaaatttcaggtatgcttcttttgcatgttgccatactactgagaatgtcttactctttttttattttttcataaacctcttactatgtacttatttttgccattttcttagcttgaagggaaatgtcaaaatgtgcgaagagaaatgttctgatgaactcgaagattctactgcttcagatgaaataacaaaatggcgtgatgactctgaccatcatgcagttgagcattttgtgccaagagttatatcactgtgcacaattttctatgctcatattttatctctctgtgtaggtttcggagttgcaacatggtccttttgaacacgatgatgatgtacttagcatttcttatgggcccttacacctctcatgcagtgttctagttcctgaatgtattgataaaaattgctttgaggaggcaagagttttgttgcagctggataagaaatttattcctgtcatatctggggaagtactactccttgttgatcaggtctgtagtcaagtatgtcatttgtggaaaaaagttaaatttaggagtattctctccattcaaaagtcttaagacatatttcattttttggtttttccaaaagtctaaggcctatttgtaatctctatgtgctaaattaaattgttgaccggaacacaagaagccatcttagtacttattggttgcatgcatgtgtatacttcattggttttgtcacatggtggatgagttaattactccttgatctttgtgacaaaagaaataggtcttagactttttggatggagggagtattatttagcagtttgtttatattgttttgtggtaatagtcatgttgtggagatgaattctgttggattgcttgttgcatttgatgaccgcgatacaatacactacttttttttcttactgtttagaattgactagtcataggagatgtttgacctttatgtatatgatgcttgagcgcataaaatgtttgaaatatatgcaggataccagaaacttgttggattttttctttctttaagcaggaagaattcattttttatgttcacatactatatgaagtagtcagtgtgtatatggtgacaaaggtacttctcggacagattttagtaacttactccttgttcttactattttacagcatgcagctgatgaaaggatacgtttggaggaactccgtcgaaaggttgtttaacttaaattgaccaggaatgttcataacattgtttcccctctttcatattcactttgtttggatttacaggttttatcagatgatggcagagggattacttacttggactctgaggaggacttagtacgtcactttatactttatagcagttggcatctgctgcactgtgttaatagcttaatataatatatctaagagaattattttgagattaagataagttttctttgaacactaggatgtgttgtttgatcttctatcatctatttatttgccaggttctccctgagactggatttcaattgttccaaaagtatatgcaacagatccaaagttggggctggatcatcaacagtactaattcctgtgaatcattcaaaaagtaggtgcctgacaatcatgtgaatgaaaaactttcttttgtgtacttagccttcggtgctattttatcgaggtcttcttgcacatcttctagttatgttcatttgaatctacttctgtaattaagacaatctgagccttctagtgctgtttaggttgcacaattttagtttgtgtttatcataccttcagcttcttatagtataagaatagtcagttcagaaggtcacatgaatttcttcaattaacatttggtgataacatgttatgatgcttttggatggctcagtccatcattctctacccattgtgaaggagcaaaaagctgtttatcccctctgtatacactagaatataataattgacacataccatttactttatattttaaaggaacatgaacgttctgaggagacaatcgcgccgtcttactcttgctgctgtgagtaaccttttctgcgacccacatatattcaacctctctgcaatagctacttatcgtaccacccctgcaatctgtctaggtggtgtgttgctttgtacctgtgttggttatatgcttatttctatggtaaaagttagtttgataactttgatatccatgaaatgtccgaaagtgtttcaaaagaatatagacaagcttcaaacactatatttctttgaaaccttcaggccatgctacgtttcttaaaaataagggaaaaaaatatttaataagggatacttgttctcattgagtctggtaattagctgttttttatgcaatttgctatctgtagccatttatgttgtagtgatctagttaatcattgtgtacatttttttttgttactgctatttgaagcgcaaatattatcaggagtggctgtggatatgcaattgtcttttttatatcttgtttttctatgcatattatcctaatgctgttacaaatatctggcgaaattttctcagaaaatttgcaacacatgttatagtgccctcatcatgtaccctgcacaggttccatgtattttgggcgtcactttaacaggaaaagatcttatggacttcattcagcaggtgatttattctgctacacttcattttaagttatgaaactcatcaatttaggtcaacattagtcaaattgtttggatgtgtaatgctttttcttgacagtgtatttgtacaccgttagatgtaggtcccgtgtcttagaaaatgctagttcggaaggaagataaaactgcagggaaatgatttgttattctaactgcagagttttcttatgcattgctattttttccagcttgatgacacagatgggtcgtcagctatccccccagcggtcattcgtattctcaatttcaaggcttgcagaggtacaccttgtatctctccccttttgttcaaaagttttcacctcgactcaaaagcgacgccctgatgtttgttcttggttgaccttaggtgcgatcatgtttggcgatcctctgctaccatcggagtgctctctgattatcgaagaactgaaagcaacatctttatgtttccaggtaccatcgaaatgctacaatttccagatcttattcttactgttatctaagccattggtttactgatgaaagctccattaataaaccattagtagtgtctaatcaaggtttttctttgtttttttttcctggcagtgtgctcatggacgtccgaccaccgtgccgattgtgaacgtcgcatctctccgcggcgagttggcgaggctcggagcggtgaacggaaggcaagaagagacctggcatggtctctcgcaccatggacccagccttgaacgtgctcgaacgcgcctcagagaactgagaaagctacgtggtggcctgtagctgtacaacagtacaagatgtaggatcatatagagggtaaatagtccaaaagaaaaggagaagtgttgcatagtgcttcaataggaagcggctttgtagtttgcagagatagatatgccattggttcacgaagaagaggtaaaatggccatgagccgtgttgtacacttgtaaaccattgtgatttgtgaaggccattctcaccctgtaaatatatgacaatatttttcgc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0551900, RefSeq:Os09g0551900