Os10g0104700

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Revision as of 08:29, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0104700| Description = Octicosapeptide/Phox/Bem1p domain containing protein| Version = NM_001070556.1 GI:115480855 GeneID:4347952| Length =...")
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Gene Name

Os10g0104700

Description

Octicosapeptide/Phox/Bem1p domain containing protein

Version

NM_001070556.1 GI:115480855 GeneID:4347952

Length

6206 bp

Definition

Oryza sativa Japonica Group Os10g0104700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:339670..345875

Sequence Coding Region

340780..342601,342689..342805,342939..343049,343138..343224,343487..343828
,345615..345616

Expression

GEO Profiles:Os10g0104700

Genome Context

<gbrowseImage1> name=NC_008403:339670..345875 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:339670..345875 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>agattacggaacaactctggaggcatggcagaggggtccctagttgttgccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaaggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggatgaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccgaacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgattttactgctagttctgcacaagtggatgtttttttgataagtagagtggagaacaggagtataactcagactggagcctccactgctaaacctgggtctaatgcacgaggtgataaaaggaaaacgccaacttccaaaaataaggcatcaaaaaacaagaagaagactcccagtgctactggcactgcagttcaagctaatgccaataatgtgaaacagccaagacaagttgttaccgaaaatgatgacaacagggtttttccactggaatttgggagtgatattgcctttgccaatacagctggagctggttccacagctccagacatcttgaatcagcaaaagcttgctcttgttgataacacagcgagggaatcagttgggctttttgatgattcagtcaatccatatgttggctctgagatcacaacagaacctacacagggtcttaacaatcctattgtgttttgggatgatattatcaaaggtgtcggtcaagaatttgataatgtgaaggattttcgtgctcagttatgcaagtatgctattgggaaaggatttgtttatcgattcattaaaaatgaaaccacacgtgtcactgtaaaatgtgttggtgagggttgcacatggcggttgcatgcatctgaatcatctcggaacaagaaatttgttatcaagaaaatgacagacgagcatacatgtggtggaggaagtggagagggtcagcggcgagcaacaagacagtggctgactactgtcattaaggagaagctgcatgagaatccattgttcaagccaaaggaccttgtcaaggaaatttatgaagaatacggagttatgctgacctattcacaggtttggcgaggtagagaagtggcacagaaggagctttatcatgctatccgggagacatatagccatttgccctggtattgtgaaaggcttttggagaccaatccaggtagcatagctttgttgtctccgatggtggatacaaaattccgccgcttctttgttgcattccacgcttctttgcatggcttcacaaatgggtgtaggcctctcatatttcttgacaaggttccgcttaaagcgactaatgagtacaagttgctggttgctgctggagttgatgcagatgatggtgtctttccagtggcatttaatgtggttgaagatgaaaattatgagagttgggtttggttcttgatgcagctgaggtatgctctccagaatcacaactatccttacaatgctatgacatttttgtccagtggacaaaagggattggatgctgctgttccacaagtgttcgaagaaagtcaccacgccttctgtttgcatcatatcatggaagaattcaaaggagagctgaggaagggaccgtggtcacaacagataagagatgggatggttgaggatttcactcgagcagcccaagcctgcagcatcgaggattttaacgcatcaattgagagcataaggaatatatccactgaagctgctgattggattattgcaagtaagccggagcattggtcagatgccatcttcagaggctgtcgttatgatcatttctcctcgaacattgttgatgcttttaataactggatacctaccaagaaggaaggatcaatagtgctgatgatagactctctgagaatgaaaataatggaggtgatagaagcaaggcgcgagtcttgcaagtcctggtcagggcctttaactccttccatggaattcaaagtgcaggatgagatgtccaaagctgggaagctgactgtgctgtgctcttctgaaaccgtgtttgaagtccggggcagtgcaatttatgttgtcaaccttgcaaattgggaatgcacctgtcgaaggtggcaactttctggccttccttgtatgcatgctgttgctgtgttcaacagggttgggcgatctttctatgactactgttcaaaatttttcagaatagagagctaccatttggcttactcaggagcaatattcccaattcctgacatggataccgttgattttagtgctggggcaaatttgattccacctcctaagccacggacatcagataaacccagaaggaagcgttttaaccccaacaagatacctactgttgtacggctctgtagcaggtgcaagcaagcaggacacaataaggcaacctgtgaagcgattttgtag</cdnaseq>

Protein Sequence

<aaseq>RLRNNSGGMAEGSLVVAICQYGGEFTSGPNGNLIYKGGEAHAVD VTREMSLDNFKDEVSKVFHVEVSDVSLKYFLPNNNRTLITISCDRDLQRMVDFTASSA QVDVFLISRVENRSITQTGASTAKPGSNARGDKRKTPTSKNKASKNKKKTPSATGTAV QANANNVKQPRQVVTENDDNRVFPLEFGSDIAFANTAGAGSTAPDILNQQKLALVDNT ARESVGLFDDSVNPYVGSEITTEPTQGLNNPIVFWDDIIKGVGQEFDNVKDFRAQLCK YAIGKGFVYRFIKNETTRVTVKCVGEGCTWRLHASESSRNKKFVIKKMTDEHTCGGGS GEGQRRATRQWLTTVIKEKLHENPLFKPKDLVKEIYEEYGVMLTYSQVWRGREVAQKE LYHAIRETYSHLPWYCERLLETNPGSIALLSPMVDTKFRRFFVAFHASLHGFTNGCRP LIFLDKVPLKATNEYKLLVAAGVDADDGVFPVAFNVVEDENYESWVWFLMQLRYALQN HNYPYNAMTFLSSGQKGLDAAVPQVFEESHHAFCLHHIMEEFKGELRKGPWSQQIRDG MVEDFTRAAQACSIEDFNASIESIRNISTEAADWIIASKPEHWSDAIFRGCRYDHFSS NIVDAFNNWIPTKKEGSIVLMIDSLRMKIMEVIEARRESCKSWSGPLTPSMEFKVQDE MSKAGKLTVLCSSETVFEVRGSAIYVVNLANWECTCRRWQLSGLPCMHAVAVFNRVGR SFYDYCSKFFRIESYHLAYSGAIFPIPDMDTVDFSAGANLIPPPKPRTSDKPRRKRFN PNKIPTVVRLCSRCKQAGHNKATCEAIL</aaseq>

Gene Sequence

<dnaseqindica>3275..5096#3071..3187#2827..2937#2652..2738#2048..2389#260..261#gtgcgaaaaccaccccacaaaaatatcgtctcctccgcgtgtgcggaaaccaccccgcataatttccaaaatacccccgagccctaatcccctcttccccttcctcctcgctacggcggcggcggcgacggcgaccgccggagccgacccgatcccacccgagtccttccctgtgcgcgcaccgctccttcctctacttcccgaccgccgcttcctcccctgttggtgtgggcgcgggcggctagaggaatcgaattgaaggtatacgtcctcttcctcctctgcgtcgtgacttggtggattgaagggccggccacctgcgtgttgtagattgggaatccgtccacttcttttttctcttctggatcgatttctttctttcttccccttcaatctcatgactctgcttctggatttctttgatgcggtgtggggtggggtggggtggggtggctggtgtagtactaccaggcaccagcagcagcttgtgtttcatcctcctcctcctaagaaaaaaaaagaaaatagaaccaacccatgctccatgttaggtcagccccttgggcttcttgttattttggatctgttgtttcttctttgcaatacatctcaaggccatgtttttttttcattacagataagctggggttccttttggtgcctgtcggtccataaaaatagtttctttggttcaccgaatggtcaaaaaaagtagaattgggggaccaaatgtgtgattcgtatgtaattagggggctttccattatatatatttggggtgtgtttcaatcctcttagcacccatgaaaacacgactgtttcttaaagtattctgtttccaagtgtaaaaaggaaaaggaagatatgtagcaggggcatcctgattcaaaatctaccttaggtttggggtcacgcaaaattacaatgttgaactgttaatttgtttgcttacagttcatttgcttccattttgaactgttgcatatatgttttgatacagtggaacagattacatcttcagtcttggttctttttttttggataatcactggaggggagagattccccacctgaattttccattgataagagatttcattacaaaggaggttacatagggcgggcagaacgacagtgccgttgccattacatatgttggagttgcataggacaggagaaaatttctttccaggctgaaaccacaatctgatcagggcgctggatacgctcagcccacaagttagcttcatcaagacagcgtcgaagaagtcgtcggagggaaggttgctcatttctgaagacgacatcgtgttggtggttccacagacaccatcagcagagcaagaagatggtccgatggtgcgccaccggtattgtttcaggggggtaaatgcaaccgacatctcgtacatcagagattccaggatgaacagagagggccgcccagaagtcgcaggtgaaagggcacagcaggcataagtggctggctgtttcatcgtcgagtccacagatatcacaagttggggattgaacagaacacttatctattctaaaccactaatataaaaaaagtatcacttgcgttcttccctacctccacccaaaagaggtgtacactgaactactacagtcacctgccttcaatcaaatccaacgttccaacattcaccgttgcaatacggacaaactatgcaattaatgcattaattacacataaatatctaaggtagatcataaaacctgctaaatcctcaccctaaataatgcccatgaacgtagttaacatatactgctattttgttctgcttgggaaacttgctcgctgaatcattcttttttttaaaataaataaataaatattttagcagggccataattcacgcttctgtagagttcatgtatcagggatatcgatattattgggtttcatttaattttggataataatatttatttcatagtgacgtggattctttatgtactacttaatttcttattgtactgtcctggattacgcatgcacattgatttatttcctaacatgtagattacggaacaactctggaggcatggcagaggggtccctagttgttgccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaaggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggatgaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccgaacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgattttactgctagttctgcacaagtggatgtttttttgataagtagagtggagaacaggtatttccttttttacctttttgtgcagccttttggagtaacttttgcaagcctacagaaccttcgacaaagttatcttagaagtacagattcaagccgtaattttgcgataccatggcttaaacctatagttttcttataaattgagtgttaaatctatactttttttatactatatcttaaatttctagttttgcaaaatttactattttttgagtaaatcattcatgttctgttttgattagtatgtttctcttgctaggagtataactcagactggagcctccactgctaaacctgggtctaatgcacgaggtgataaaaggaaaacgccaacttccaaaaataagtaggtgccactgttccagttttctctatctgatgttatttatagccccgtgcttttccatgttatattgaataccatctttctccagggcatcaaaaaacaagaagaagactcccagtgctactggcactgcagttcaagctaatgccaataatgtgaaacagccaagacaagttgttaccgaaaatgatgacaacaggtacataattgggtttcatagaattgccacatttttgcatgtcttctctaattttagatgttacatcattttattttaatgaccgtatcatgcccaaatttatacggttgctacttttgttaaaataaactagggtttttccactggaatttgggagtgatattgcctttgccaatacagctggagctggttccacagctccagacatcttgaatcagcaaaagcttgctcttgttgataacacagcgaggtaattgtttgactaattttatgttcttcatcattcctgcaagtttgtgaagtatgagttcaacggatgttggcatggcttttgcagggaatcagttgggctttttgatgattcagtcaatccatatgttggctctgagatcacaacagaacctacacagggtcttaacaatcctattgtgttttgggatgatattatcaaaggtgtcggtcaagaatttgataatgtgaaggattttcgtgctcagttatgcaagtatgctattgggaaaggatttgtttatcgattcattaaaaatgaaaccacacgtgtcactgtaaaatgtgttggtgagggttgcacatggcggttgcatgcatctgaatcatctcggaacaagaaatttgttatcaagaaaatgacagacgagcatacatgtggtggaggaagtggagagggtcagcggcgagcaacaagacagtggctgactactgtcattaaggagaagctgcatgagaatccattgttcaagccaaaggaccttgtcaaggaaatttatgaagaatacggagttatgctgacctattcacaggtttggcgaggtagagaagtggcacagaaggagctttatcatgctatccgggagacatatagccatttgccctggtattgtgaaaggcttttggagaccaatccaggtagcatagctttgttgtctccgatggtggatacaaaattccgccgcttctttgttgcattccacgcttctttgcatggcttcacaaatgggtgtaggcctctcatatttcttgacaaggttccgcttaaagcgactaatgagtacaagttgctggttgctgctggagttgatgcagatgatggtgtctttccagtggcatttaatgtggttgaagatgaaaattatgagagttgggtttggttcttgatgcagctgaggtatgctctccagaatcacaactatccttacaatgctatgacatttttgtccagtggacaaaagggattggatgctgctgttccacaagtgttcgaagaaagtcaccacgccttctgtttgcatcatatcatggaagaattcaaaggagagctgaggaagggaccgtggtcacaacagataagagatgggatggttgaggatttcactcgagcagcccaagcctgcagcatcgaggattttaacgcatcaattgagagcataaggaatatatccactgaagctgctgattggattattgcaagtaagccggagcattggtcagatgccatcttcagaggctgtcgttatgatcatttctcctcgaacattgttgatgcttttaataactggatacctaccaagaaggaaggatcaatagtgctgatgatagactctctgagaatgaaaataatggaggtgatagaagcaaggcgcgagtcttgcaagtcctggtcagggcctttaactccttccatggaattcaaagtgcaggatgagatgtccaaagctgggaagctgactgtgctgtgctcttctgaaaccgtgtttgaagtccggggcagtgcaatttatgttgtcaaccttgcaaattgggaatgcacctgtcgaaggtggcaactttctggccttccttgtatgcatgctgttgctgtgttcaacagggttgggcgatctttctatgactactgttcaaaatttttcagaatagagagctaccatttggcttactcaggagcaatattcccaattcctgacatggataccgttgattttagtgctggggcaaatttgattccacctcctaagccacggacatcagataaacccagaaggaagcgttttaaccccaacaagatacctactgttgtacggctctgtagcaggtgcaagcaagcaggacacaataaggcaacctgtgaagcgattttgtagacaatggaagttctggattatccagtatgcgtagaaggtatgccttcagtccgtactccaaccttttcgtctcctaagataacctctttccttcattatgaagtttgaaatgtgtgagactgaaattcgatagtctgtagaaatccgacatcttaaacagttaaaatcgatatgccagttgtatctataagtataactgtacagaaagagagcttgttgactgaaaacatctaaatgtcaatatcatggtctttcatatgccaaaaaaggatatcctttatgtaaaattcatatatgccaaccctccaattcaggggcaatgaaaatgcaaatggcttgtattcgagaaaaagaaaatgcaaatggctttcctatggtattgcctattcttccgctgattttgattttacattctagattgtgatcctgggtatcaatttcctaatttgtaatggtatggggaggactatatgtgcattcccatgttttcgccagtagaaaataccgatatttatggaatgtaacagtagatatcaatttgctcacaagctattgttcccctctgaatatgttttcctctgttgaatttactactttccactggtagcatggaaccatatacatattggaggagctgtgctgtactggtgaaatagtaatttgggcgtactgaaaagtagttggtgtagtatctgttgatctttgtctgaaatgtttgactaatcacatattctgaacattttatctctgtttgacgattacagggtgaaaggtctgaagctttaagtggagtagcgctggtgagaagccgtagattttgttggatggatggaagaacgatgagatatgatgaatgataccaccgttttgtaacttaatattatattataaatgggggtggaaagatgtagtaatttaaatgtcaaatcttaagaagaagaggaatgaaggatgagctttgttagtagatagattatggttagcggtttagaagtcataataggtagcatggctgttgaaaatgatgatgattcaagtgtaccagtccatgattttaaacattgtctttctagtcttctattcagtgttaaggatggctatcaactagtt</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0104700, RefSeq:Os10g0104700