Os10g0147400

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Revision as of 08:31, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0147400| Description = Similar to Auxin influx carrier protein| Version = NM_001070696.1 GI:115481135 GeneID:4348107| Length = 6190 bp| De...")
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Gene Name

Os10g0147400

Description

Similar to Auxin influx carrier protein

Version

NM_001070696.1 GI:115481135 GeneID:4348107

Length

6190 bp

Definition

Oryza sativa Japonica Group Os10g0147400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:2828629..2834818

Sequence Coding Region

2828966..2829340,2831164..2831629,2833390..2833487,2833782..2834078,2834287..2834694

Expression

GEO Profiles:Os10g0147400

Genome Context

<gbrowseImage1> name=NC_008403:2828629..2834818 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:2828629..2834818 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtccgggagcagcggcggcggctacgcggacgagaaggggccgggggcggcgacgatgcaggcgctggggctgcagcagcagcacggcggcggcggagaggtggaagaggagtcgtcggagatgggggagaagacggcggcgaggacgcggctgtcggggctgctgtggcacggggggtcggcgtacgacgcgtggttcagctgcgcgtcgaaccaggtggcgcaggtgctgctgacgctgccctactcgttcgcgcagctgggcatggccagcggcctcctcttccagctcttctacggcctcctcggcagctggaccgcctacctcatcagcatcctctacctcgagtaccgcacccgcaaggagcgcgacaaggtcgacttccgcaaccacgtcatccagtggtttgaggtgctggatgggctactggggaggcactggaggaatgtgggactggccttcaactgcacgtttttgctgttcgggtcggtgatccaactgatcgggtgtgccagcaacatctactacatcaacgaccatctggacaagcggacatggacgtacatcttcggcgcctgctgcgccaccaccgtcttcatcccgtcattccacaactaccgcatttggtccttcctcggcctcctcatgaccacctacaccgcctggtacatcgccgtcgcctccctcatccacggacaggtggagggtgtggcgcactctgggcccacaagcatcgtgctctacttcacgggggccaccaacatcctctacaccttcgggggccacgctgtcaccgtggagataatgcacgcgatgtggcggccgcagaagttcaaggcgatctacctgctggcgacggtgtacgtgctgacgctgacgctgccgtcggcgtcggcggcgtactgggcgttcggggacgcgctgctgacgcactcgaacgcgctggcgctgctgccgcggacgccgtggcgcgacgccgcggtggtgctcatgctcatccaccagttcatcaccttcggcttcgcctgcaccccgctctacttcgtctgggagaagctcgtcggcctccacggctgcccctccctctgcaagcgcgccgccgcccgcctccccgtcgtcctccccatctggttcctcgccatcatcttccccttcttcggccccatcaactccgccgtcggctccctcctcgtcagcttcaccgtctacatcatcccctccctcgcctacatggtcaccttccgctccccgcaatcccgccagaacgcggtggagcggccgccgaggttcgccggaggatggacgggggcgtacgtgataaactcgttcgtggtggcgtgggtgctggtggtcggcttcggcttcggcgggtgggcgagcatcaccaacttcgtccaccaggtcgacaccttcggcctcttcgccaagtgctaccagtgcccgcctcaccccgccgccgccgccctctcgccgccgggtgccatcgctccggcgccggcctcgatgctgccgccgttcaactccaccgccgccggcatctttgccgctccggtgccgtctcctgctccggctccggcaccgatgcatttcgtccttggtcaccaccaccatcaccggcaccaccgccacggcctctag</cdnaseq>

Protein Sequence

<aaseq>MASGSSGGGYADEKGPGAATMQALGLQQQHGGGGEVEEESSEMG EKTAARTRLSGLLWHGGSAYDAWFSCASNQVAQVLLTLPYSFAQLGMASGLLFQLFYG LLGSWTAYLISILYLEYRTRKERDKVDFRNHVIQWFEVLDGLLGRHWRNVGLAFNCTF LLFGSVIQLIGCASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLM TTYTAWYIAVASLIHGQVEGVAHSGPTSIVLYFTGATNILYTFGGHAVTVEIMHAMWR PQKFKAIYLLATVYVLTLTLPSASAAYWAFGDALLTHSNALALLPRTPWRDAAVVLML IHQFITFGFACTPLYFVWEKLVGLHGCPSLCKRAAARLPVVLPIWFLAIIFPFFGPIN SAVGSLLVSFTVYIIPSLAYMVTFRSPQSRQNAVERPPRFAGGWTGAYVINSFVVAWV LVVGFGFGGWASITNFVHQVDTFGLFAKCYQCPPHPAAAALSPPGAIAPAPASMLPPF NSTAAGIFAAPVPSPAPAPAPMHFVLGHHHHHRHHRHGL</aaseq>

Gene Sequence

<dnaseqindica>5479..5853#3190..3655#1332..1429#741..1037#125..532#aacacaccacacacacccacactggcagcagctcatacacatagctagctcagctgagacacacacacacacagtgagtagttcagctcaaagctagcatcagcagcagagctaattaacaaacatggcgtccgggagcagcggcggcggctacgcggacgagaaggggccgggggcggcgacgatgcaggcgctggggctgcagcagcagcacggcggcggcggagaggtggaagaggagtcgtcggagatgggggagaagacggcggcgaggacgcggctgtcggggctgctgtggcacggggggtcggcgtacgacgcgtggttcagctgcgcgtcgaaccaggtggcgcaggtgctgctgacgctgccctactcgttcgcgcagctgggcatggccagcggcctcctcttccagctcttctacggcctcctcggcagctggaccgcctacctcatcagcatcctctacctcgagtaccgcacccgcaaggagcgcgacaaggtcgacttccgcaaccacgtcatccaggtacctacttaccttctcaaggactataaaatcgatctctcacatatataaatcaatatgtgatatgatgatacatgtctctctttttttttatcttcttaaagtatgtttatggctggctttatatagcctactattatacctgctctaatatcgttaacgatatataaatcagtacgtgatatggtgatacatgtttttgtaccagtggtttgaggtgctggatgggctactggggaggcactggaggaatgtgggactggccttcaactgcacgtttttgctgttcgggtcggtgatccaactgatcgggtgtgccagcaacatctactacatcaacgaccatctggacaagcggacatggacgtacatcttcggcgcctgctgcgccaccaccgtcttcatcccgtcattccacaactaccgcatttggtccttcctcggcctcctcatgaccacctacaccgcctggtacatcgccgtcgcctccctcatccacggacaggtacatatatatcttacataatattcatagcagttttatagttcttgaggaggtatcatgatgtaccaaaaatttaatataaaatttggtacctcatagtatttaggtaccaaaatgtatcaaatttataatataaaaaatagtacctcacgatacatcttcaagaactgtaaaattactcatctttttttaatataagatcaaagtcccaaacgtcacttatttatgataacaaaatgatagtaatagtgatagatagtaattgtaatagtgcatatattgggaataatgcaggtggagggtgtggcgcactctgggcccacaagcatcgtgctctacttcacgggggccaccaacatcctctacaccttcgggggccacgctgtcaccgtgtaagccgaccatcctctctcttgattagctatggctcgattaaccatttgattggtcattagtgcctacttaattttactaagtttagtttagtttaattactctaaagtacgaacgattagtactgtatccacttatagctggcttgctgcctgcctattgttagttagtttacttctttccactaattaagctagcttagcagtagtgtaacggctcactgctaatggagcgtgagtgcgcaccatgcgaggcataatggcatgcatggtcacgtgccatgcacgcatggcttgaagtacttactgacatgtggtcccattaaacttagggaccaccacttgcacatataggaacacacggggtaccacgtgatgagacgtggatgtggttcctcctaacatccaagtacacgtgtcccgttcatctgtccatggaggagaaaattgtaatattgggactgtaaacatgagggcttcgctgttttaacacttcgagtggatgataaatgggtccatctgtgtctataaaatatgggtccagtgtcattataacaaaagttaatgtttgcagtgttataattgcaaatcccctctgttgagccagtgctaccgtcgagtctaagcaaccgtcgaaaaaactcgtaatattagccatggaatgtatttctgtagttgttttacgaaatatagctcatatcaatttggcagttggctataatatgctgttggtttcgtctaagttgattaagagggtgatatatatgctagcaaatgaagaatgaacatcgatcacatctcgttggtgactcatgtatttgtggtctaaccagtcatttttgccatgtttaatggatcaagctagtcttatagcaatgtaatgccaaatgccaacacaagctaactgggccctttggtgtaagctcagtctatagcagctagcatgcatccatcatctctagctactttgtactccctccgtcccacaatataagagattttaagtttttgcttttaacgtttgaccactcgtcttatttaaattttttttgcaaatataaaaaacgaaaagttatgcttaaagtattgtagataataaagaaagtcaaaaataaaataattaataattttaaaaaaatttaaataagacgagtggtcaaacgttacaaacaaaaactcaaaattccttaatattatgggacggagggagtatagtttgtgtctttatgtaccaaaccaagacaagacaagaccacactgtatacatgctactacaggaaaatcactttggtacaggttagaaaaccaatatttaacttcgatcggtcacctataactaaaaaagatgttatgaacctagaacaaacacctataaactcttataggtgccatattttaaaccgtccggtcacacgtggcatgacatgcgcaatgcccaccaacatctgggccctgcatcgtcgtttctcttgcacgaatctgaaagcacacacatgtactccctccgttttagattataagttattttgattttggtcgaaatcaaactgctttaagtttgactaaatttgtaagaaaaaaataatatttttaaccaaaataaacatttaattatagatttgattgaactgatttggtgttgtaaatattactacatttatatctataaaacttgggagtagattgattttaaccaaagtcaaaataacttatagtagtagtaattaagaaagtaattaagggatgaaatgcaaatgcagggagataatgcacgcgatgtggcggccgcagaagttcaaggcgatctacctgctggcgacggtgtacgtgctgacgctgacgctgccgtcggcgtcggcggcgtactgggcgttcggggacgcgctgctgacgcactcgaacgcgctggcgctgctgccgcggacgccgtggcgcgacgccgcggtggtgctcatgctcatccaccagttcatcaccttcggcttcgcctgcaccccgctctacttcgtctgggagaagctcgtcggcctccacggctgcccctccctctgcaagcgcgccgccgcccgcctccccgtcgtcctccccatctggttcctcgccatcatcttccccttcttcggccccatcaactccgccgtcggctccctcctcgtcagcttcaccgtctacatcatcccctccctcgcctacatggtcaccttccgctccccgcaatcccgccaggtaccttcttacttttcttcttactccatccgtttcaggttataagacgttttaactttgttcaaacttaaattgttttaagtttgactaagtttgtagaaaaaagtagtaatatttttaacctcaagacaaatttattatgaaaatatattcaattattgatttgatgaaactatatttagtattataaatattactatatttgtctataaacgtagtcaaatttgaaacagtttgactttgagcaaaaccaaaacattttataacctaacacggaaggagtactaattttctttatctttctaattctcatcatcaaaatgcattttacatatatacatgcttgaatttatttgtctttgagtgcctacattgggggtccattgcaaccatatttgctgaggctttaggtagagatgatatagtttcagtgctgttcctatgtatacatagttgccaaatgctagctatctagatacagaagcaaatgtttggtgattgatggaacagctggttgttgcaatgcagcctagacagcatgagcccaccatgcttccccatcacaccttgcttgcttcttctagtgcttactgataattagaacagatcaattaattaattaattgtttgtcttaattaatcaaagctagcgctagccattaacaagactagctagttggcgtctatttgattgatctgctgctgggacgtggcaaattccaatgaactcaacgtaacactggtaattaaacactattattattgtttctgctgctgctgagtgttgcaagtgtgtcattctcggtgaagaagagactgaatgcaagacaaatctgagcagcgacagcatgcaattcctttgagctgagctagaaaccagagcaagtggcgatatgatatgatatgataaaagaaaagctatatgtaccataaagctactgaaagtggtgtagagattaatcaggacgcttgctgctgctgctgtgctgcatgcttgcctgctgcaatgtttttgtaccatctgctgtccgggagccattggcaccgagcagacagactgcattgcaatattgcattgtatttgcattagagagagagctaggtcgacacccatgataccatgtctagaaagcaacaaaaataaagctttcagcaacagcatcatcacagtatactagtagcagtagaataccatcattcacctaatgacctacttgtgacatcatcccaatgcaagcttaacttatctttgcataatctttaatttcttcctgatctgcatccatatactgttctgtttgattctgaaacagtacatacaatacatacagttgcatgttctgtttcgtataattcggtaacagtagtataataactcaaacatatataattaagtaaaggtgcaatattattagacttttgcataatcttttctttctgatccctgcattcatatatactgctctctgttggattcttgaacagtaatctaactgaaaattataattagagcaagtttaatagtatagctaactgctgactctaaattatctatagttaacttaatagccaattaatagccaattcatacaatagttacctataaacatatactacataatcaatatttggtcccacctgtcatacacatatgcattttacagtctgtgctgtagctggcttacaaatctgtaacccgctactcttacctctactcttttatcttcttgaaatatgcttatagctgacttatagtcagctattgtacctgctatcacgagatgatagtaattaataactgattggattggattggattgcagaacgcggtggagcggccgccgaggttcgccggaggatggacgggggcgtacgtgataaactcgttcgtggtggcgtgggtgctggtggtcggcttcggcttcggcgggtgggcgagcatcaccaacttcgtccaccaggtcgacaccttcggcctcttcgccaagtgctaccagtgcccgcctcaccccgccgccgccgccctctcgccgccgggtgccatcgctccggcgccggcctcgatgctgccgccgttcaactccaccgccgccggcatctttgccgctccggtgccgtctcctgctccggctccggcaccgatgcatttcgtccttggtcaccaccaccatcaccggcaccaccgccacggcctctagctaattaatcgagatcaatcaagatcatgattatcagaggttgggtttgcattattgcactagtttttagcgagctactagctagttgatcatcactgcaagattgttaattagcgctagtaattagtaaaagtaagcctcttttcctaatcctattgtatgctttgcttctttcttcttcttctggttactgagagagagtgagagtgagaatgtttggtggtggggtatgcatgtcagagacacgtttcaagtctctcgtcttgtaatgtgtcctttttgtgtggagctgcttttgagaaagaaagaagagagatcaaatttaaaaaaaaaatgg</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0147400, RefSeq:Os10g0147400