Os10g0198600

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Revision as of 08:33, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0198600| Description = Intron-encoded nuclease 2 domain containing protein| Version = NM_001070831.1 GI:115481405 GeneID:4348255| Length = ...")
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Gene Name

Os10g0198600

Description

Intron-encoded nuclease 2 domain containing protein

Version

NM_001070831.1 GI:115481405 GeneID:4348255

Length

9810 bp

Definition

Oryza sativa Japonica Group Os10g0198600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:6549309..6559118

Sequence Coding Region

6549468..6549831,6550130..6550182,6551467..6551504,6556502..6556820,6557059..6557369
,6557976..6558585

Expression

GEO Profiles:Os10g0198600

Genome Context

<gbrowseImage1> name=NC_008403:6549309..6559118 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:6549309..6559118 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgccgcagctgcagggctgctacgcggtctcgtcctggccccggctcccgcggctgcccccgtggccctgcgcctcccacgcgcagcggcggcgggtgctgcgcctcctgccgccgcggcgccgctgcgccggtgcggtccgggtggtcgcggaggctggcccggccctggcaatagaccgcgtcgcggaggaggcggacgtgcggtttccgggggatgtggagggggttccgggccagcagcagcagcgggaggaggaggaggatgcagtggatgagagggagaggttgaggcggatgcggatctcgaaggcgaacaaggggaacacgccgtggaacaagggcaggaagcacaccccagagacgctgcagaggattcgggagagaaccaggattgcgatgcaggatcccaaggttaagaaaaagttgatgcatctgggacatgcacagagcgaagagacaagaataaagatatccatgggagtgaggcgaggatggaacttgcgtttacagaaattaatgatccaggatggttgctttgtggagtggagagacatgatagcagatgctgctaggaagggctttgctggtggaatatccctacaatggaattcatataaaatcttgactgagcagatgcggcaggagtggttggaaaaagtccagaaaagaagatcaatgcctcggccaacaggtaatcgacgagcaccaaaatctccagagcagcggagaaaaattgcagaagccattgctgcgaagtggctagataaggaataccgtgaacgtgtatgcagtggaattgctagctaccatggaacatcttctggaactaaagtaccacgaaagccaagatctgccagagaacctggttcaaagagagatactgtgaaaaagaaacctattcaatccagatcagctggattggaggatgcatgtggaacgactcccacagttaagagaaagaaaagtgcaactccttacaaagatccaatggctggtgaaaaactagagatgataacaaagattcgagctcaaagggcagccctagaaatagaaaagaaagaagctattaaaagggctaggtcactgattgcagaagctgagaaggctgcaaatgctctggagactgttgcttccacaagcccttttgctcaagcatcacttatagaagctagaaagcttgttacagaggctagattatcacttcaacacgttgatgatgaagggcctgcagatagtgcttctgatgatgcatcacaagactcaggtgcgtctgatttgcacaatcacgacatggcaaatcaaaatgacgtgatcaagcaagagaataaaccagtcaatgggatggagcttcctccaagcaatgttaatggcagagatttctattttgacgtgtcgactctcactgaaacagatcaccttagagattatcagagaatagaaaattctatggaaagagcctatctgcttccttccgcttcttcagctattcaagacgtgaacgaaaatcacaggatgaaagattttaacgcacatcaattaatggttaatgatgaatcaataacaattgaccaaattgcatctgaagtagcagaaatttatcctgacgagccacaggaggatgacacgctacctgtgcagaagtctaaaatgaggtgggtacgtgggcgactagttgaagtggaagaataa</cdnaseq>

Protein Sequence

<aaseq>MAPQLQGCYAVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRC AGAVRVVAEAGPALAIDRVAEEADVRFPGDVEGVPGQQQQREEEEDAVDERERLRRMR ISKANKGNTPWNKGRKHTPETLQRIRERTRIAMQDPKVKKKLMHLGHAQSEETRIKIS MGVRRGWNLRLQKLMIQDGCFVEWRDMIADAARKGFAGGISLQWNSYKILTEQMRQEW LEKVQKRRSMPRPTGNRRAPKSPEQRRKIAEAIAAKWLDKEYRERVCSGIASYHGTSS GTKVPRKPRSAREPGSKRDTVKKKPIQSRSAGLEDACGTTPTVKRKKSATPYKDPMAG EKLEMITKIRAQRAALEIEKKEAIKRARSLIAEAEKAANALETVASTSPFAQASLIEA RKLVTEARLSLQHVDDEGPADSASDDASQDSGASDLHNHDMANQNDVIKQENKPVNGM ELPPSNVNGRDFYFDVSTLTETDHLRDYQRIENSMERAYLLPSASSAIQDVNENHRMK DFNAHQLMVNDESITIDQIASEVAEIYPDEPQEDDTLPVQKSKMRWVRGRLVEVEE</aaseq>

Gene Sequence

<dnaseqindica>160..523#822..874#2159..2196#7194..7512#7751..8061#8668..9277#acacgcacagagccacgctactctccccacccagattccaccatttcacgcccccgcctccacttcgccttcgcctcgccgcgccgccgccgtctagcccttccgcgtaggcccaggcggccgggccggcgggaagcggcggcgagctcctcccctctgatggcgccgcagctgcagggctgctacgcggtctcgtcctggccccggctcccgcggctgcccccgtggccctgcgcctcccacgcgcagcggcggcgggtgctgcgcctcctgccgccgcggcgccgctgcgccggtgcggtccgggtggtcgcggaggctggcccggccctggcaatagaccgcgtcgcggaggaggcggacgtgcggtttccgggggatgtggagggggttccgggccagcagcagcagcgggaggaggaggaggatgcagtggatgagagggagaggttgaggcggatgcggatctcgaaggcgaacaaggggaacacgccgtggaacaagggcaggaagcacaccccaggtaagagctgttgttttatctccctgaccttcttttgtgagaaatgcttgattcaattgttgatgagctgagaacggactagttggaatctgtatattagccgcatgatgtcttaaacgtccttcatggctgagtatctcaggattcactatcgtagaaagaaaactaaataactgcaaggatgaagactcacaatgacactccttttcgaaaaagaaagaaaactaaataactgcaaggacaatgattcacaactgaagaaattatactgggttattgaattcaatttcgtatacagagacgctgcagaggattcgggagagaaccaggattgcgatgcaggatcccaaggtgaagtcatgtaagatttttattgttgttatttagtagtgtcatgcatttactggatagttgacttgccttagaaattgtgcaaagttccatagatctaggagtcctgatgataatattaaaaaagagtctgcctgaacaagactagatttctataagcacatagtattagcatcatatgatcaaatatggggacataattccatccgaaagaaagttaggtctctagctgtaagtttgcatctctcagtgttgttggcagggccaaattttagtgactaatgtagtctaccatgttatttgttagataagcatagcatctctactcttatcatcttatggttgagtttatctcacattgtggtgtaacaagtgttgctgctggacttgtgtatagctattaggcttgtggtgcaaaagcaccactaaatttctgatggcttagtggaatatatcatatctgaaagttataattccatctgttaaaattttcaaatgctttggttttgcattgctattggtgattttatataaatgctgccaaaactgtacatgactaccatacttacacttcaatattatagtagtaacatttcatttcatcatgtttattacaatcaagacgaaggcagtttaaattagactattcatgtccccatctctttccgccatccgttgtcccatgttttacaaccatgctaagcgacttatgttgcataaaattaagatacaatgccacattaagggcatgtggtaattaacatatcagaccaacagtttaagcacaatggttattgtgctgcagttatttttatagttcatgtgaaaagtaggaaatagtctcttatttggtttagttaatcagagcaaagttagttagattatattttattatgaagattgccataccacaatttgcatcatagttttttaatgtaaaaagacaatcatttccaatttcttaagaaagtgtagctagttgagtacccagacagaatatatcgaaatgtgatccacccaattgaggttattataagcaacttcaatcccaaaagtaacttaaatattccaactgcaaaggatcacaccaaactagttcccagtggtgcaatgcatgagtgcaccagcaacagtcctgtgttcagttttgaaccatgcttatctatatgattatttgttgggatcgctgttatcatttttttcatatctattatatttgactatagttcatatgataaactatttaatcaatggtgtagcttgcctaaagtgttttttgtgcaggttaagaaaaagttgatgcatctgggacatgcacagaggtaggatactatttgctcttaagttatatgcgtgcattttaatttgaaaagctatgattacagttgaactgaagaaggtattttatacacatccacgtacaaatgtaaaggattcactattcttctctaagtatgactgcattacttggcacgtgttctacttggtagcaactcccagtggtgaacccagcactaggttttaggtatggctgatttgccagcataaacaaagcaattgttatcaaatcagacgattagtcataaagtcggtttaggtgggcaatgtgttcgcagatagagtgttgggccttgggttaggtcggcagtgaaaacatggatgggcctaggcggctagtccattattgctttacgggaagggatactatagcaactgggaggtaaaccctagcctccacttcccctagccaacatcaagcagagaggagtgcaccaggggtgagaggagcgtcaccaaccaacctcctcctcccctgctctcagcctctcctccaatgctggtgctctgatctcctctgctcttccatctccctggctcccacttcttccaaattgctggtgctgcaagcctggaactagcctttccccaaaacaccaattcaccatgctaattggcctattgtgtttagtactttaggacttatgttattgctggctattccatattccatagtttctatcatatattgggctagcacagttgtaaagactatatagtccatcctctgttttcgcacgaccaaatcatggactagttgtgtacttgtcgactcagtagccaagtcggtgtagggggtacctcgactcaactttacgacttgacaacaatgaaacaaagtgtattacccacaatccaccaccataaaagcatctgaaaatgaacatgtatttgtattacaagcacattaccacatggaactaattgggatgaacaactgtagtctgtatgcaaacatgtgctgaaggcagtatgtagaagaattcctcactattgaagctttcaccacacttcaacagaagttaaacattaattacaattgataatttgatatttccattaccgttatgccttggctacattgtaatcagacataatcaaatttatttgacagttacttatagatcatgaccaacacatttttgagattctttaaaactgtctagcctttgacgactctattggcagcatataacatgcaaagagaaaatagagcacatgtcaaattgcactaatgtgatgcatccagataactcacgttaaatgctaggatctcattggtgtagacaacaatgaggaatatacccatcatggcttcacatgcactcatgtatggatctggcctcctgtctccgctggtcactgccgtaccagtgctagcgccacctgctacattgcttgcttgtgattcattaaccaaaatctgatgtgccatttttacagtctgctgatgagtgtgtgtgtgcgtgtttgggggggggggggtaggttagaaaccaactaagagcaagtttaataagaaaggaagtttctagttccaattatatctacgtcatctattgatcacatagtagatagctggtgcaatagatgagctctattctacagccacattctttattttattgatcaatttaggcccaccatgaccttgtttcagctatcgattggggaggaggaaggtggggtcgaccaggggcgggcccaggattttcaacttgggtattcgaaattggaagagataattttttccaacacaaagtctaatagttgtataatatataacggtataagcatgacgtcgtaaagtcatagattcatagaattgaccataaattaaatatgttaagcatattttaaagtacagtactaaagtattaattgacaaaacatgtcagatttataaagcatagaaaatggaaaaaatgataagaaatcttacaatttagagagaaacttttcgtttcttgatattttgaaaataagtgacgatgtctttatccttcactttcctcttcatgtttcaaacctacaaaacaacactatggtcttctaatttaagtattaaccatgctaactctgctaaatatgtgcactgactctgctacaaagcttcacaaatcagtgaatcacaagtttcaaagttcaattgttcatccataaaccatgaaccatccctgtatggctggattcaaatcctaaataaaatgaaccatcctggattcaactaggaactataaatccgaaattcctaaatcctattcgaacctaattaccaaaatgttcctaaccagttttaccttcgtctgggtcctgccgtctgggcgtttggcgcggtggagtggtggagacgacagaggaggccggagcacaagcgtggctgcgcgggcacctgggcgccacagtccacaggggcggcggcgcgtgggcgccataggggatgggcggatggcgcccttcgcggcaagcggcagcccgggggcgcaggcgtggccactgggtagccgtgaagctgcagcagcttggcagccagctgggaaccaccgccgtcggggttgggaggcgatgctgcgaccccgatgcgcctccgctagtccgctgtcgctgtgcccgtgcgccgtcaggagtcgggaatcagggtcgggaggccgccagggagaagatcgattgggaaggagaggttagggtttcattattcccttttgctgatatgggctattgggccaatgggccgaccagccgaggagaggacggaggtgggatgggatggtgctaagtcgggcttctctgaagaaacaagtctattttacatatttttttcatatacatatgaaatatatattacatatatgaatttttttgtcaaaaatcttgggtattcaactgaatacccatgaatcatggtgggcccgcccctggggcgcaggcgtggccactgggtagccgtgaagctgcagcagcttggcagccagctgggcaccgccgccgtcggggttgggaggcgatgctgcgaccccgacgcgcctccgctagtccgctgtcgctgtgcccgtgcgccgtcgggagtcgggaatcagggtcgggaggccgccagggagaagatcgattgggaaggagaggttagggtttcattattcccttttgctgatatgggctattgggccaatgggccgaccagccgaggagaggacggaggtgggataggatggtgctaagtcgggcctctctgaagaaacaagtctattttacatatttttttcatatacatatgaaatatatattacatatatgaatttttttgtcaaaaatcttgggtattcaactgaatacccatgaatcatggtgggcccgcccctggggtctaccccttcatcgtagcttagcttgtgctgcagttcatgctaatttagtcacccagtcctattctctttcctctcctctctcttccagctcacgcaaaaatctgatgtggcatttgtatagcttgctgatatagtactattgtacctgctttaacaggtaccttctcccaccgaataactcagttatactcttatcttttattcggcctcctaaacttggtgctgggtcctggaggctgcacctcctgcttcttgtttgtagtgtcgcctctgtgtaattactttggcctgcaactcagctcatattctagagcatagctcaggtggagttctccttcatcttacgcaacagaatcccactctcgaggtccatgctgcatggtggaggccattaatccactatggaggtggttcccgctttcggtgagtaactaccctagcctgccataatgggatgtccacccttggcaatgccttatagtctagttttgatactttagagttccagataaaccttggtggccatagaagctaattttactcttatgcaagctaagggaggaagcctaagtattattgtatgctggacatgcctaggtggttgacagtgttttggcgattggtatggttctttggtgcatattggcatgtattcatccttggtggagaacctacattagcattccaataggttattgaacgtgcacagtgttaagttagaaacatattacatgggaactggattggtctaagatttttcatggtgcataaggtcatgtatagcacgactctttgccgggcgcatggatgaagtttatttttctttttttgccaccatggagattaggggcgattcccaagggtgtgtgtgttgctgcttgagcatgcattggatgcatcaccgtccggccaaatgcatggaaagcaaacctgaggaggcaggcgcctaaagaatagctgcctctgttccagattaaggctcctacggagagatctttctctcattaggcagctacataaatctgtcccattttacatgccctaaggaggtttcgaaaggtacctcgctaatattggcgtaacaggagctaatattgtgttttgttataggaggtaccaggttgcattcaaatagtgttaatgctacctccagtaccttatcaaggactgtaaaatcactcgttctaaaatattaaatgtgtgacctactcaccttatagatgatatgtattcttcgaaatgatccaaaagcagctccacacgtgcatattggtcacaccaaaatcatatcagatgaaccttggcatttaggtactggtcactttgccataaggtacataaaatttaaaggagatatgcatcactatgtgaatattaatcattatcttaatactctaatgggttaccttcaaccacattcagaggtctagagatatccctccgattatatgggagggacaaattttgatctcaactgagcttttagtaaatctgcttgctcattatggtttgattaacccaaaacttgttggtccatttgcgtatgtcaagctgtaaatgtgatagctccagggggtcatagaaccaatcctaatgataggtatttcttcttaatatagcgaagagacaagaataaagatatccatgggagtgaggcgaggatggaacttgcgtttacagaaattaatgatccaggatggttgctttgtggagtggagagacatgatagcagatgctgctaggaagggctttgctggtggaatatccctacaatggaattcatataaaatcttgactgagcagatgcggcaggagtggttggaaaaagtccagaaaagaagatcaatgcctcggccaacaggtaatcgacgagcaccaaaatctccagagcagcggagaaaaattgcagaagccattgctgcgaagtggctagataaggtaaagagaatagcaataccttcctcttacatgtttctcattttcatttgaatattatacccaagctctgaactgatcttacaccattccttgtagctttgttacatggattaaatagtcttaactccaatactccatatagctaggagtatatggatcacacaccagcaatctatatggaaattggcataaaggagaaatatctagttttatgagtgccttatctgttttcttgtaggaataccgtgaacgtgtatgcagtggaattgctagctaccatggaacatcttctggaactaaagtaccacgaaagccaagatctgccagagaacctggttcaaagagagatactgtgaaaaagaaacctattcaatccagatcagctggattggaggatgcatgtggaacgactcccacagttaagagaaagaaaagtgcaactccttacaaagatccaatggctggtgaaaaactagagatgataacaaagattcgagctcaaagggcagccctagaaatagaaaagaaagaagctattaaaagggctaggtatgtctgcttattccatagttcaattgggtgggatcaacatttttccactactggtgattttttggcaacatatttttttttatattgcaaattttctcctcgcgcttacaagttcttctaactggattggattgttcttaataattttgtgaaatgtcagtcaaaaggcatatttccctgaaaattgatgcttactattctcacgtaaaaagttgttcataccaagggtattttcttttgtttgttcatcttgttcgatacattgactattatagttttgcagatgaaaaacagagatgtacacgcataataagtacttatgggaaaaaaaattcaaaagctctaatatgaacacctaaatatcttaaaacatgtaaaactacagatcattatgacttgaatatattttagtgcactatgcacttgatttcctgtttcagttatttggtactgtttgctgagcagaaaaactatacatgctatctgtacatccagggatatgttttttaagaaataatgcctgaagtttgcacttgttgggttgcacttaaaacatttaattctgtcactcaagtggcttctgattatattccttgtcattaggtcactgattgcagaagctgagaaggctgcaaatgctctggagactgttgcttccacaagcccttttgctcaagcatcacttatagaagctagaaagcttgttacagaggctagattatcacttcaacacgttgatgatgaagggcctgcagatagtgcttctgatgatgcatcacaagactcaggtgcgtctgatttgcacaatcacgacatggcaaatcaaaatgacgtgatcaagcaagagaataaaccagtcaatgggatggagcttcctccaagcaatgttaatggcagagatttctattttgacgtgtcgactctcactgaaacagatcaccttagagattatcagagaatagaaaattctatggaaagagcctatctgcttccttccgcttcttcagctattcaagacgtgaacgaaaatcacaggatgaaagattttaacgcacatcaattaatggttaatgatgaatcaataacaattgaccaaattgcatctgaagtagcagaaatttatcctgacgagccacaggaggatgacacgctacctgtgcagaagtctaaaatgaggtgggtacgtgggcgactagttgaagtggaagaataaacagttaccagaattatattggttgactaaactgttcaagatatcattatcttgcattccgcttctgctttgattactgttggtatggaccaaaatgggaaatgattgctgatcttggcacgtattcatggtgcattcaaccatgggaattagtcgggaatacgccatgacagagcctattatattctgaggtgagatgcttgtaattagtagttgccaactttagatattttcctcttcttgaatgtagtcaggttagccaaactgaaatcctaaaatcacggtgtggtggatgcatttatcttgtattagaacattttgtagctgtcagattgaggtcctacggatagccctaacacagatttcattaagtcaaatcatacgaggttgtcttgtaagataagtcaaatcatacgaggtcgtcttgtaagatattctgtagctatcattttttttctaggttatcttgtacctgagttcatttgtgaacttgtatcgagagaactactgtttctggctttctgctttgtgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0198600, RefSeq:Os10g0198600