Os10g0204100

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Revision as of 08:33, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0204100| Description = Zinc finger, RING-type domain containing protein| Version = NM_001070841.1 GI:115481425 GeneID:4348266| Length = 477...")
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Gene Name

Os10g0204100

Description

Zinc finger, RING-type domain containing protein

Version

NM_001070841.1 GI:115481425 GeneID:4348266

Length

4775 bp

Definition

Oryza sativa Japonica Group Os10g0204100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:7148041..7152815

Sequence Coding Region

7148471..7148665,7148836..7149337,7152016..7152596

Expression

GEO Profiles:Os10g0204100

Genome Context

<gbrowseImage1> name=NC_008403:7148041..7152815 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:7148041..7152815 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggaacatgggcagcagcggcggccaccgtcgccggaacaacggccacggccggcatcaccaccatggtcagcccaccgcgccgccgccgccgccgcagcagcagcaacaggaggtggcgccgaaccgctacgtgttcgcggcggcgagcccttacccgccgcagtacccgaatcccaacctgccgcagtactacccgcagtacgggaacttctacccgccgccgccgccatcgatgccagggccgctcccggcgccgtacgaccaccaccaccgtgggggtgggccagcacagccgccgccaccaccgccgccaccccagccgatccatgccgcaggggagttcccgcctgctatgctgcaacagcatccccactaccatggctggggtggaaacttctcgtatggtccacctacccagccgccggcgccggcgccgccgtatgttgagcaccagaaggctgtcaccatccgtaacgatgtgaatctcaagaaggagactctccgggttgagcctgatgacgagtgccctggacgattcctcatcaccttcacctttgatgccaccgtcgctggaagcatgactgtttacttctttgcaaaggaggagctgaactgtaaccttacagcaacgaaagaagatttactcaagccagtcactgtaacatttaaagagggtcttggtcaaaaatttaggcaaccttcagggacaggaattgacttctcgttgtttgaagatgctgaattatttaaggagggagagatggatgtatatccacttgcagtgaaggctgaaacaacattctcaattggtcaattctcagaaggggaagaacaaaagtcacaaactccaaattcacagatcacccaggctgtatttgagaggaaggagaatggggattaccatgttcgtgttgttaagcagatcctttgggtcaatggcacgagatatgagttgcaggagatttatggaattggaaactctgttgaaggtgacaccgaagggaatgatcctggcaaagagtgtgttatctgcctatcggagccaagggatacaactgtcctcccatgtagacatatgtgtatgtgcagcgagtgcgcaaaggttctgaggtaccagaccaaccgatgtcccatctgcaggcaacctgtggagcgtttgctcgagatcaaagtcaacaacaaaggtgaagagcaacagcagcagcagataccacaaccaccaccacctccttcaaccgcgcctccgcaccaacagcaagagtcgcaagcgtga</cdnaseq>

Protein Sequence

<aaseq>MGNMGSSGGHRRRNNGHGRHHHHGQPTAPPPPPQQQQQEVAPNR YVFAAASPYPPQYPNPNLPQYYPQYGNFYPPPPPSMPGPLPAPYDHHHRGGGPAQPPP PPPPPQPIHAAGEFPPAMLQQHPHYHGWGGNFSYGPPTQPPAPAPPYVEHQKAVTIRN DVNLKKETLRVEPDDECPGRFLITFTFDATVAGSMTVYFFAKEELNCNLTATKEDLLK PVTVTFKEGLGQKFRQPSGTGIDFSLFEDAELFKEGEMDVYPLAVKAETTFSIGQFSE GEEQKSQTPNSQITQAVFERKENGDYHVRVVKQILWVNGTRYELQEIYGIGNSVEGDT EGNDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQPVERLLEIK VNNKGEEQQQQQIPQPPPPPSTAPPHQQQESQA</aaseq>

Gene Sequence

<dnaseqindica>4151..4345#3479..3980#220..800#gtcgatttcgttccctagccaagcgctccaggtcgtaaattccacccaaattcgttgcctcccccactacccaacccaaatccgtagaggaacatagcagaagtgaagccaagaaaccagtaaaaaagcaaagcttccttgcttcgatcgatttatgatcaatttttgaagatacttccggccaccgctggtcgattccggcgaccccgtttccaggagatggggaacatgggcagcagcggcggccaccgtcgccggaacaacggccacggccggcatcaccaccatggtcagcccaccgcgccgccgccgccgccgcagcagcagcaacaggaggtggcgccgaaccgctacgtgttcgcggcggcgagcccttacccgccgcagtacccgaatcccaacctgccgcagtactacccgcagtacgggaacttctacccgccgccgccgccatcgatgccagggccgctcccggcgccgtacgaccaccaccaccgtgggggtgggccagcacagccgccgccaccaccgccgccaccccagccgatccatgccgcaggggagttcccgcctgctatgctgcaacagcatccccactaccatggctggggtggaaacttctcgtatggtccacctacccagccgccggcgccggcgccgccgtatgttgagcaccagaaggctgtcaccatccgtaacgatgtgaatctcaagaaggagactctccgggttgagcctgatgacgagtgccctggacgattcctcatcaccttcacctttgatgccaccgtcgctggaaggtgagatttgtgatgcttgtttatttatatacgtacatgtgatgtactactccatacctatacatacatgttgtaatagtgtagcatataacatgatgagctgatgaccgtagctgtgatatctacagtttcttgttaccattgaaatgttaatgtttgttttttctctcatgttgaccttgacctacaatttcatgttggctccttctatgtgttttgtcaagaattttgatgttccctatcttgatgctgatgttttgtgagattcatctttctctatattatgtcacactcaccaagaaataatcgaactaaaaagggaactaaagaatcgttgtagaactgaagtacatttctagcagattcttgtagctgaacagcttaatttctaggggtgataaaggtcattgtggaaatttatgtttttatgggtccatgggcaccctagaattttagttggtacagtatttgtgtttgtgaaccaaggagagcccaacaaatatggaagtagagctgacattatactctgggatgctaaggaattgaggaatttgagcagtatgttcagatcgacaccatgtaggtggagtttcgtttggcttaattggcgaagtttattacaatggtgcctgattaagtgattattttagtagttccatgatgtgagttcgttaatattaagagtcagtttgagttttaatttgagtcggtggtctatatactagcagagtgttttagcaaatgggattaaccaaagggccatattattgtagcattattggacaagattcgcctggcctgctcggttatgttggttttctgcgtgtggttgggcctgtgcacgttggagtccatgctggcttggtctccaggcccaataagtctgctcatagtctttgtgcagagattagattagtttttgctctcgtgtgtttgcctatgtttttgcccatcgtgttgatgtgaaaagaaaggccgtacctgtgcattgctccatgacatgacccttagttcctgctggttccatatattggttaaagttttgcacttttgccatactactaattatgttggttctgcctactggagtgctagccacggttttggtttacttcgagtgctttgttgttctaaccttaatttgtgtcatatatatttatgctttttggactcttcacattgcatccattcagagtaaaaaattgctgctctttgttggtaccgtgaaagatagaggggaatagggtacttgctaccgggtgctcaccatattttgatgttataacttactgacaaacaaaaggatggtaacaataagtgacaagcggcaaagagaattacaacttccattatctttgaaccatcaaaagtgaatgttcacttgcatattgaattctgtttacagaaaattaagcccaattttttgtgggctgggcccttcatggaccacagttggccatagttattaattctttattatgaattttcatgtcatattataggataaatatctgtgaccaacatgccatattgtagaaatgcctaaatggtttcccagcataatttttttttatcaattcttgtagtttgtacgttcttaatatttttgtgggaacttaagatgacattcagttagaagaagtgaatttgtaatgtaggcgccattgctctatatcatgtgtgaaagcttgaactttggagtcaaccgtttacctaattttctggatgatctaggttttgctactgaaatcaaggaattagctgccccagttagtggtgaatgtaaacaatgtagctgttgtttagccaagggcagtgctaggatgtacagaatcatttaaagccatcttttgttaggctttgttcggcagcagttgattgggagaaaacccccttgttatccgtgccttcctgaactgctaagtggtgcattttttacaaaagatttctacaggaaaattgctttaaaaaatcatattaatccatttttcaaatttgaaataattaatacttaattaattatgagctaatggctcaccttgttttgcgttatcttttcaatcttttccttttcatctcctctcaaacacacacttagtcctcactttgttttagaaaaaaatagatcatgcttttaagctatcatattgtgtcttgttgagttattagtgtgcatcttttatggagtagtagaaaaatatcccatgcttgtagttagcaatggataatcagtatcatctccatttcttgctttgtagttcgttacctttagaaacttgttttctttcctgtttctgtcttcggcatcttttttactgttcgtttttctcctagtacctttgtagactggtgtctacattagattgtattttgaagatcaatgtgtagggacaggaggctttattttaattggtaatcactagtttattagtggtgctaattgtttgttcaatcggtataatatttttatggtgatcaaagttttctttgtctgtacattgtccattacatgagttgttctcctctgatgtctaaatatatatttttgcaggaggtgtgtaatcctttactctatctctatagctgtgcatactgtcgactgatttgaagttacttttagttgattttaacttgtgtttcttcctttttttaatgaattgtgtttctttgttgaacagcatgactgtttacttctttgcaaaggaggagctgaactgtaaccttacagcaacgaaagaagatttactcaagccagtcactgtaacatttaaagagggtcttggtcaaaaatttaggcaaccttcagggacaggaattgacttctcgttgtttgaagatgctgaattatttaaggagggagagatggatgtatatccacttgcagtgaaggctgaaacaacattctcaattggtcaattctcagaaggggaagaacaaaagtcacaaactccaaattcacagatcacccaggctgtatttgagaggaaggagaatggggattaccatgttcgtgttgttaagcagatcctttgggtcaatggcacgagatatgagttgcaggagatttatggaattggaaactctgttgaaggtgacaccgaagggaatgatcctggcaaagagtgtgttatctgcctatcggagccaagggatacaactgtcctcccatgtagacatatggtaagtcttgaaacaggctcttgagtttatgtttgtcctttattttactttatgctgaaattatgtcctacaactcttctgttcatgttttacatagtagatgcctagatcgtcatcgtcgtgaaattttcggaatgacaaacccttttgacattttccttatggtgcagtgtatgtgcagcgagtgcgcaaaggttctgaggtaccagaccaaccgatgtcccatctgcaggcaacctgtggagcgtttgctcgagatcaaagtcaacaacaaaggtgaagagcaacagcagcagcagataccacaaccaccaccacctccttcaaccgcgcctccgcaccaacagcaagagtcgcaagcgtgatcgcatttgaacttcatacatattacatacactacttgatgtctggtttgctgcctccatatatacaggagctccccttgaataagtggaaaacagggagaagacatgtgcgtttttagtatatgtgagcacaaaagcttgctgcgcgcggtggcttgcaaacttgcacttcagtgctgggtgtgctgaggatgggttagttaataccctgcatccatgaaaacaaggtttgtacataaattctctctacttgtactactgcgacagaaattctcacgatttgtattactgcggctgatggaagtggagtgcgtgtgcggtattggctatagttctgtcgttaacttgccctttgaggcaacagtatgcgtgtaattatctggcaattactcccatcaaacaagagctaaatggatattatttccccgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0204100, RefSeq:Os10g0204100