Os10g0458700

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Revision as of 08:40, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0458700| Description = Ribonuclease H domain containing protein| Version = NM_001071302.1 GI:115482347 GeneID:4348807| Length = 5717 bp| D...")
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Gene Name

Os10g0458700

Description

Ribonuclease H domain containing protein

Version

NM_001071302.1 GI:115482347 GeneID:4348807

Length

5717 bp

Definition

Oryza sativa Japonica Group Os10g0458700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:17297266..17302982

Sequence Coding Region

17298290..17298385,17298974..17299132,17299295..17299396,17299461..17299553,17300100..17300189
,17301205..17301297,17301378..17301521,17301927..17302034,17302299..17302350
,17302430..17302464

Expression

GEO Profiles:Os10g0458700

Genome Context

<gbrowseImage1> name=NC_008403:17297266..17302982 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:17297266..17302982 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaagagggcagcaactattatcttgtcaggaagggggagatggtagctgtttacaaatctttaaatgattgccaggctcaaatttgctcatcggtatctggtcctgctgcaagtgcctacaagggtaactcttggagcagagaaaaggaggaatacctctcttcgcgtgggttaagtaatgctacatatgtaatcaatgcagctgaacttagggaagatctatttggtacccttatcccctgtacttttcaggagataactgtttctagttcaaatcaatcagctctaaatcatacaggtgtccttaacaatacaagatatcagcctggggcacaatccgtggatctgaactacgatgccgtgggatctggtcaagcctcagctgagcactatagccagcgtattaaccaaggctactctgttcggggacaagcatttaacaggctggaatcaagacctagttcttccagccatttctcaccgaataatcttgatcagagtggaactgttgatgcacaacctctctcgaaacaatatatggtatgcttacttcacttcgatggtgcatcgaaaggaaatccaggaaaagcgggtgctggggctgtgcttatgactgaagatgggagagtgatatctcgacttcgcgagggtcttggtattgttaccaataatgttgctgaataccggggcctgatcttaggattgagatatgctattaggcatggtttcaagaaaatcatagtatatggcgactctcaactagtctgttatcaggtgaaaggtacatggcaaacgaagaaccagaacatgatggaactgtgcaaggaagtgagaaagctcaaagaaaacttcgtctcatttgagatcaaccacattcgacgggaatggaatgccgaggcagatcgccaagcaaacatagctattactctttccagtggtgtggtctctgaggagcgtggcgatggctag</cdnaseq>

Protein Sequence

<aaseq>MEEGSNYYLVRKGEMVAVYKSLNDCQAQICSSVSGPAASAYKGN SWSREKEEYLSSRGLSNATYVINAAELREDLFGTLIPCTFQEITVSSSNQSALNHTGV LNNTRYQPGAQSVDLNYDAVGSGQASAEHYSQRINQGYSVRGQAFNRLESRPSSSSHF SPNNLDQSGTVDAQPLSKQYMVCLLHFDGASKGNPGKAGAGAVLMTEDGRVISRLREG LGIVTNNVAEYRGLILGLRYAIRHGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCK EVRKLKENFVSFEINHIRREWNAEADRQANIAITLSSGVVSEERGDG</aaseq>

Gene Sequence

<dnaseqindica>1025..1120#1709..1867#2030..2131#2196..2288#2835..2924#3940..4032#4113..4256#4662..4769#5034..5085#5165..5199#actgcgccgccgctcatcggcgcgacgctccggcggccggcgctcgcgggctccgagccggtcgccgcctccctctgctctcctctccgtcgccctctcctccaggccgccccctccggtgctccaccgtcgccctccctcgctccggcagctcacgctcgggggctggccgccgtcgccctctccggcagggttcaggtatcctaatcctccctaggatcaagggttcgccgattccgattggttgttaaacccagcatcccttccgcgtagaatcctatgaaagttaggagatctattcgaatgcttgtactgttgtacagctgcacctgcattggccattggagatcgaatgtaatgtgatatactattagactgacagcagcatttggtctcaagtgggttaaaatatgtgaaagttagagaaagccgtttttgttgatatgtaacgtttcggggtagcatttgtgcattattatgatgatctgatggagtttaggcttattttccaggggaaaattgagtattcgcttctctttttagggcttctatttttaggggaccttcagggtttgcccctatttttgtatgaattgaggattcgcacctgttttcgtaaaagtagctacaataggctcatatctaggtattttccccattttagtttattttttttctaaaacttaaatacatatacgaaaagactattgtgcactggttttttcacataaggcatctcttatatcactggcctctggggagcactctcttctggagatcacgccgacaacggtcgtgcggggtgaccactagcgttcctgcaggtgcagctgtgcgggtaagtagcaagagtgcctgctgctgctgttcgtgctggtctctaactatgccggcatcgtaactgaccattgcaatacttatcacttatgtagctactagaattagttctcttgatgacacatttgcactgaaatgatcttcttcatttgtgcttcatctttttgacagaattgcatttggtacgatggaagagggcagcaactattatcttgtcaggaagggggagatggtagctgtttacaaatctttaaatgattgccaggctcaaatttgctcatcggtatgtgtatttgtactaatgttattgtgattgtacattaagttttcctgttttcatccatttttctcatttatagtgtaagtttttggttttgctgttgtgaaatttttttttttaaaaaaagaacacagtgatcctacctgttgataaggtaaaggataagttgtttatgcaactttgcacttatccttgctccctcaacctcctaacacaatttgcgtatcttcatgtatcaaagggttaactttgtggtttgttttctatattcatttgaatattcatttgtggtttgttttctatattcatttgaatggattgtttttctatcttgccatgtcgttagcttaactgaagggagatgaaacaagtcaacgttagccctcttcacgttttctactaaaaaactatcaacattttggtgaattttacttctattttcaaatatcaagtaagaattgcacaactcctctgaaaactacttctcccaccgtctgtaatacattctgggattataaatactgtaaatttcatgcttctttctttgtatatggacagtaactcttgagattgctgatttgttttcaaaaggtatctggtcctgctgcaagtgcctacaagggtaactcttggagcagagaaaaggaggaatacctctcttcgcgtgggttaagtaatgctacatatgtaatcaatgcagctgaacttagggaagatctatttggtacccttatcccctgtacttttcaggtaatgtgccaacacacttatatgtgccttttccatctctggatgacatgtcgaatctgacaaagttaatataagctccaatattgtgtaatgggataattttttttaaaaaaaaaactagctttgtttttttattcactcatgctttgtcttcctttgtaggagataactgtttctagttcaaatcaatcagctctaaatcatacaggtgtccttaacaatacaagatatcagcctggggcacaatccgtggatctgaactacgtaagttttgctattgcaagcattcaagatatcagtgataaaacctcatcctgctttattacaggatgccgtgggatctggtcaagcctcagctgagcactatagccagcgtattaaccaaggctactctgttcggggacaagcatttaacaggctggtaagctaagtaccatggtgagactgcgagtgtgcgtatgtatgtgcctagcatgccactagacataacgagtgaatatgaggaaaatgaacattatttctagtttatactttccctggtagcaacatttggcacaggtgatgataatgcaaattaggtacacacttcattttcagagcatgtgattaagtgcttcctaaccacatgtaaatgcaggacggtggcaccagtacatacacatttaaagtgtataatgtccattcgcgtgagcacataatcatgagttaccatgtggcttccatcatgcatacacatgcataaagagatttaattctgtttttctttttaatttgagcagggcatcatgttcatgcttattaatatggtatcacaatgcatatgtatgttctgctgaaatgcatttgcatgtagtcatatgttcctgacaacccttaataaaggatacactgattcttcaagttattttatgttgatcctcaagacacttgttattacttggaataatatgatggccttatattgcaggaatcaagacctagttcttccagccatttctcaccgaataatcttgatcagagtggaactgttgatgcacaacctctctcgaaacaatatgtaaagtttggtcttgttttgctgattaattttctgcatctactacaatacttttgacttatcagatttctaaagctataatgcattcttaaaaaatgtgctattcaaggtgttgtgttaattaagttcgatattaaacagaaaaacatatgaatgctcaatatgcttttgtattgaatgctcttaatcactagcttcgtttttctattgttttgaccaggtaggcctactatcacaaacatgttctgccactaattcatttttcattaattaacttctgacatcttatctgtaaggaaataacaggttttttattttccaacatgaataagtattacatgattaggataggaagtttcaagcttgtagtacctgttgcttctttatagaaaagatgcgttgtgagtgcatggctttgcccactaaggttcaaatcttgatgtccccacttacacactcaggctcacagatttaccatgggcctctgcctgttgaactgcgttaaggggtacacgcacaagtgtgctgtgcttgtgtggtggtgtttgtgcatgtgcatcttccatgtaatcacaaaaaaatttatctcctgtgtattctccaaaagaaaaaggtgtgctttgcagaatcgttttgataaggctgtcgtatcagtaagacattcttttaagactgttaactccttaattactattcaactgtgcctatttcttgcatctctttaggatgctttactgcagaatcttttgtaaatggatgatgaaataataaatttaataatctatgtacttgaggccattaacccttaaagttgtttcaattgtgctcagatcctgcatgtaagttttccacttattaatccaactgtcacatctacaggcaaactgtggagctagaaatttatgttgccatagggttacctcctcacctcaccttgcatagaagtcatctacttggtcattaatacatgctattttactcgtataaatgttttgcaccttatctgttttttcagatggtatgcttacttcacttcgatggtgcatcgaaaggaaatccaggaaaagcgggtgctggggctgtgcttatgactgaagatgggagagtggtatacttaagtacttaatgcacttcaaagtttaatggttggttttcacttttatttcatgtgcttacttatccttgaagatatctcgacttcgcgagggtcttggtattgttaccaataatgttgctgaataccggggcctgatcttaggattgagatatgctattaggcatggtttcaagaaaatcatagtatatggcgactctcaactagtctgttatcaggtatattttgttctttgcttcttcatcactaatcaagtcacctcctttttatggttgtctgcctgtccggcatgttgggattgtcatgctgcttgatgtgctttcaattatgaaataagaactaaatgttcctagaagcaaacatttaagatcatgtttcaaatcaaatcatgaacaaagcacatatagaaactgaaaatgatctgccattcctctctttggcatagtcatgggcctcggacctcagcccaatgcccattacaatatagtaaattaagaaagaattcatataagtatttttcatagaaagtttttctcataccgttatcacatattcaaactacatattttagacaagagtatcattttctccgctaacagctttctcatatatttctcaaataggtgaaaggtacatggcaaacgaagaaccagaacatgatggaactgtgcaaggaagtgagaaagctcaaagaaaacttcgtctcatttgagatcaaccacattcgacgggtattatttaaacttccttcctgcattgcatttttacgttgatgatttgatataagcatgaacagtgagacaacattattttgtctcgttttgcatcagcggcatctcattcttcctagaccttcactgcatatctgatgtttctgtacagaagttgtctctagcgtatgcttggttgggcaagctaaaacaacagctatatctctaaggcactgatactttttggtattgctgattttctccactttctgtttctgcatgaaggaatggaatgccgaggcagatcgccaagcaaacatagctattactctttccagtaagatacatttacttgttctttttctttccaattctcatacatgctttcataaccatgaataaaacccatactgcaggtggtgtggtctctgaggagcgtggcgatggctagccttctccggctataacccttctagataatgggagtaactagtatatgtagttaactaattagcaggtggagacctatatgatgggagtaactaatatatgtagctaactaattagcaaccagagacctatgttttgcatcttgctgctctggcctctgggagtccagcttgcagtaacctgttgaagatgatccgtgtgaagggtacacctcgatgatgaacacttgagttaccaggcctcattttggagcactatgtgagctccagctagttattcttggtgtaagcttcactacttgggccttcacataggcgttgcccaagttagtagactggcagcgatgaactgattgagtgcgatgatgcaattgctagtttgccatgtgttgggttttggttttggggggctaagaaccaagtttggcctctttacctacgaaagcatctgcatgtaaactgagctataagctccattttgtcaggcttgtgaatgaaattgaaaactccgcggatcttc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0458700, RefSeq:Os10g0458700