Os10g0474966

From RiceWiki
Revision as of 08:41, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0474966| Description = Long-chain fatty alcohol dehydrogenase family protein| Version = NM_001189276.1 GI:297727682 GeneID:9266405| Length ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os10g0474966

Description

Long-chain fatty alcohol dehydrogenase family protein

Version

NM_001189276.1 GI:297727682 GeneID:9266405

Length

4664 bp

Definition

Oryza sativa Japonica Group Os10g0474966, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:18130591..18135254

Sequence Coding Region

18130591..18132327,18134709..18135254

Expression

GEO Profiles:Os10g0474966

Genome Context

<gbrowseImage1> name=NC_008403:18130591..18135254 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:18130591..18135254 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcggcggcggcggaggcggcgagggggcacccgctgctgaggggcggggagaggcgggagcggtacacgcacgggctgggggccgcgcagatggaggcgctccgcgccatctgcggcgcgttcatcccgtcgctgcccgaggcggcggcggcgctggcggaggcggacgacgagggccgcggcggcggcgacaaggacctcgagcggttctacctcgcgtccgccgccgacgccgccgtccccgacgaggtggcggagctgatggtgaaccggtgcgcgtgggaggcggtggcgctggtcaccgtcgtgctctggctgctcgccaccagggccggcacgctcgcgctgtgcggcgccgccgcgtgcgtcgcctcctccgccgccggcgggtggctcccgtccgtgcgcaggttcgccgacctgccgccggagcggcgggaggcggcgctgaggcggtggagctcggcgcggtggctgttcccgctcaagatcaccttcaccgtcatcaagatcatctgccacttcgtcttctacaccaagctggacgagaaatcgaggaacccaagctggaaggcgatcgggtacgccgcgcctgccgccgccgccgccgcggtggagcaacgcagaccggcgtcgccgtcgcggcggccgctcgaggatggcgtggtggagacgaggcggatggacgacaacgccctgctcaggtcgctcgtggagaagggcctcgccgtgaagacgggaacggccgcgcaccacacggtgcagtgcgacgccgtggtcgtcgggtccggctgcggcggcggcgtggccgccgccgtgctcgcgtcgaaggggtacaaggtggtcgtcgtcgagaagggggactacttcgccacggaggattacacctccctcgagggcccgtccatggagcggctctacgagaagggcggcgtgttcggcacgtccaacgtcacgaccatactgttcaccggcgccacggtcggcggcggctcggcggtgaactggtcggcgtgcatccgcacgccggcggagatcagggaggagtggtcgcgcgagcacgggctgccggtgttcgcgagcacggcgtacgcgcaggccatggacgcggtgtgcgatcggatcagggtgaccggcgggtgcgaggaggaggggttccagaacagggtgctccgccgcggctgcgacgcgctcgggatgcgcgccgacgccgtgccgcgcaactcgtcggaggggcacttctgcggcagctgcaacctcgggtgccccacgggggacaagaagggcaccgacacgacgtggctcgtcgacgccgtcgagcgcggcgcggtcatcctgaccgggtgcaaggccgagcacttcatcctcgagaggaacgccggcgggaggggcggccggagcaagaggtgcgtcggcctgatggcgacgtgcacgagcagcggcatcaccaagaagctccgcatcgaggcgaaggtgtccatctctgcgtgcggcgcgctcatgacgccgccgctgctgcgaaacagcgggctcaagaaccgccacatcggccggaaccttcacctccacccggtgtccatggcgtggggctacttcccggacagcacggcggagctcccgggcaagtgctacgagggcggcatcatcaccagcatgcaccgcgtcaccgaccgcaccatcatcgagacgccggcgctcggcccgggcgcgttctccgccgtggtgccgtgggagtccggccgcgacatgaaggagcggatgcgccggtacgcgcgcacggcgcacgcgttcgcgctggtgcgcgaccgcggcgccggcgccgtcgacggcgagggccgcgtccgcttctccccgagccgcgacgacgccgaggagctccgcgccggcctccgccgcgcgctgcgcatcctggtggccgccggcgccgccgaggtgggcacccaccgcagcgacgggctccgcctccggtgcaagggcgtgcgcgacgcggacgtggaggcgttcctcgacgaggtgaccatcgagaagggccccatgtacccgggttccgacaagtgggccatcttctgctcggcccaccagatgggcagctgccggatgggcgcgagcccacgcgacggcgccgtcgacggcgccggcgagagctgggaggccgaggggctctacgtctgcgacggcagcctgctcccgacggcggtgggcgtgaacccgatgatcaccattcagtccatcgcctactgcctctcgaacggcatcgccgacaccctgtcgcactag</cdnaseq>

Protein Sequence

<aaseq>MAAAAAEAARGHPLLRGGERRERYTHGLGAAQMEALRAICGAFI PSLPEAAAALAEADDEGRGGGDKDLERFYLASAADAAVPDEVAELMVNRCAWEAVALV TVVLWLLATRAGTLALCGAAACVASSAAGGWLPSVRRFADLPPERREAALRRWSSARW LFPLKITFTVIKIICHFVFYTKLDEKSRNPSWKAIGYAAPAAAAAAVEQRRPASPSRR PLEDGVVETRRMDDNALLRSLVEKGLAVKTGTAAHHTVQCDAVVVGSGCGGGVAAAVL ASKGYKVVVVEKGDYFATEDYTSLEGPSMERLYEKGGVFGTSNVTTILFTGATVGGGS AVNWSACIRTPAEIREEWSREHGLPVFASTAYAQAMDAVCDRIRVTGGCEEEGFQNRV LRRGCDALGMRADAVPRNSSEGHFCGSCNLGCPTGDKKGTDTTWLVDAVERGAVILTG CKAEHFILERNAGGRGGRSKRCVGLMATCTSSGITKKLRIEAKVSISACGALMTPPLL RNSGLKNRHIGRNLHLHPVSMAWGYFPDSTAELPGKCYEGGIITSMHRVTDRTIIETP ALGPGAFSAVVPWESGRDMKERMRRYARTAHAFALVRDRGAGAVDGEGRVRFSPSRDD AEELRAGLRRALRILVAAGAAEVGTHRSDGLRLRCKGVRDADVEAFLDEVTIEKGPMY PGSDKWAIFCSAHQMGSCRMGASPRDGAVDGAGESWEAEGLYVCDGSLLPTAVGVNPM ITIQSIAYCLSNGIADTLSH</aaseq>

Gene Sequence

<dnaseqindica>2928..4664#1..546#atggcggcggcggcggcggaggcggcgagggggcacccgctgctgaggggcggggagaggcgggagcggtacacgcacgggctgggggccgcgcagatggaggcgctccgcgccatctgcggcgcgttcatcccgtcgctgcccgaggcggcggcggcgctggcggaggcggacgacgagggccgcggcggcggcgacaaggacctcgagcggttctacctcgcgtccgccgccgacgccgccgtccccgacgaggtggcggagctgatggtgaaccggtgcgcgtgggaggcggtggcgctggtcaccgtcgtgctctggctgctcgccaccagggccggcacgctcgcgctgtgcggcgccgccgcgtgcgtcgcctcctccgccgccggcgggtggctcccgtccgtgcgcaggttcgccgacctgccgccggagcggcgggaggcggcgctgaggcggtggagctcggcgcggtggctgttcccgctcaagatcaccttcaccgtcatcaagatcatctgccacttcgtcttctacaccaaggtaagcacgcacagcgcacgctgaattatctggtttgatttttctttttttcttttgttgttgttgttaatttaatattggcagtcaaccccaacatgtcacgtgaagagaaaaaaacaatctgacattctgactatgaataatgaatgtctggtcttgccagatttctcctattcttccgtagttattgcgtgatcttagaataaatttataggtactccattcatcttaaaattttgatagtacattagatagataaaattgatatgaaatatgatttattagatttatttattttgaacggggaaatcttgtaaatagatggagagagtgtatgtttgatattggatactctattcatcccaaaataaatcaacaatttatatttagattgtaaaaacaacaatatattttaggaggaacatactttccccaaaaaaatactatcaatcttttattaaaaaaatgcttagaattggaggcctaactgaaaatttatttatttttactttttgctaacagtgtatagttttttctttacaactagtgtatagtttttcctaatgatattttcccggtttgatgcttaaactggatgagttgccattgctgcttgaacctttgcaaatcttagcttgagagcgtgtaggtctctttcacattgttagcataaagacatgcattttggcaataatactttctcaactgtgtcttcttctgctgctagaggtcccttttggaagctcagagtcatggttcgttctcatctaaaaaggacgttctccagccgaaatcatgtcgctagcgctgctgttttattgggaatcttgtgtagatggctatggtcccgtcacatatttttgctttgattaatggcattaattttctgcatctggacaaacaaatagcattaggatatgcgaagagatcaattactctctccattcctaaatataaacatttctagtttatttagcaaagattaaaaataatgaaaaaaatccttttcaattatcttattggttaaattgggaattttgaattgtttagattccccttctaatcacctgattggctgaaaatgcttgaatttctgtgcatttgaatcggtatcataaaaatgtttatattgtatagagaatttaaatcataggattgcttatatttgacaacataaagttattggtgtgattctatagctgtacaattttggtattttttgggccattattatggatttgaaaagacaactatgtgccaccaagagaggttgtagagagaacctataaatggtaccagagcatgtgcgattggaggattgagatcctctgcagtcaaatacacggtgcatttgtcactaacatatgggtccagggatcatcgggctcacatgtcacgtgacttcgactgcagaggattctaatccgtgattggatagatgtgatggagttgtggtgcacgaaaatatggacttaaaaggatgcataggctgcgaagagatggcgatattgcctcggccatagggaagaacatcaatggtagttgatagaacaaaagacggaaaacaatctaagccgtcttgttagaaaagctgtattaagagcgagcaggtgaatctagcggcatgatccatcggaaacatgagaaataagttcgggtttattttaggattttgcggccggttagccatttataccttacgcataaagtataccactagctacgaaactggacgcatgcggcggcaagcagaaagcagctagcccaacaacacatgccggggtaagtacacggactagtaaagttcgctggccggcggcaatggcggcggttgcaaggtcgcgacatcccggccactgtgcgcggcgacctctacctgtcacgtcgttgttcaggctggccgatgcgacgcccgcgtcgcgccgccgccggctagctgtgccgggacctcctcttactggttgtgagcagagagattctactctcacagtgtgcactgtgaggaattcaacccagattccagcccggcccggccactgtttggttctagttaggcctttggaccacgaccgtcttgtccggtccagcactccaatcattgattcgaatttggacaaattcccactcaaaaaagtaaaaaggagtctggacaaattctactttgggttatgaattttgtagatttcagtaccattcttgaaaatatattgtattttctattgtaaaatttaatactttcaagtagtattttgaggttacaaaaactttaacgtaaaatttagatatctagaatttagatatctagaggttttctcaatgatcataaaatttctcattttttataattcgtttaatttgagtgtaacccggtttggatgcagctggacgagaaatcgaggaacccaagctggaaggcgatcgggtacgccgcgcctgccgccgccgccgccgcggtggagcaacgcagaccggcgtcgccgtcgcggcggccgctcgaggatggcgtggtggagacgaggcggatggacgacaacgccctgctcaggtcgctcgtggagaagggcctcgccgtgaagacgggaacggccgcgcaccacacggtgcagtgcgacgccgtggtcgtcgggtccggctgcggcggcggcgtggccgccgccgtgctcgcgtcgaaggggtacaaggtggtcgtcgtcgagaagggggactacttcgccacggaggattacacctccctcgagggcccgtccatggagcggctctacgagaagggcggcgtgttcggcacgtccaacgtcacgaccatactgttcaccggcgccacggtcggcggcggctcggcggtgaactggtcggcgtgcatccgcacgccggcggagatcagggaggagtggtcgcgcgagcacgggctgccggtgttcgcgagcacggcgtacgcgcaggccatggacgcggtgtgcgatcggatcagggtgaccggcgggtgcgaggaggaggggttccagaacagggtgctccgccgcggctgcgacgcgctcgggatgcgcgccgacgccgtgccgcgcaactcgtcggaggggcacttctgcggcagctgcaacctcgggtgccccacgggggacaagaagggcaccgacacgacgtggctcgtcgacgccgtcgagcgcggcgcggtcatcctgaccgggtgcaaggccgagcacttcatcctcgagaggaacgccggcgggaggggcggccggagcaagaggtgcgtcggcctgatggcgacgtgcacgagcagcggcatcaccaagaagctccgcatcgaggcgaaggtgtccatctctgcgtgcggcgcgctcatgacgccgccgctgctgcgaaacagcgggctcaagaaccgccacatcggccggaaccttcacctccacccggtgtccatggcgtggggctacttcccggacagcacggcggagctcccgggcaagtgctacgagggcggcatcatcaccagcatgcaccgcgtcaccgaccgcaccatcatcgagacgccggcgctcggcccgggcgcgttctccgccgtggtgccgtgggagtccggccgcgacatgaaggagcggatgcgccggtacgcgcgcacggcgcacgcgttcgcgctggtgcgcgaccgcggcgccggcgccgtcgacggcgagggccgcgtccgcttctccccgagccgcgacgacgccgaggagctccgcgccggcctccgccgcgcgctgcgcatcctggtggccgccggcgccgccgaggtgggcacccaccgcagcgacgggctccgcctccggtgcaagggcgtgcgcgacgcggacgtggaggcgttcctcgacgaggtgaccatcgagaagggccccatgtacccgggttccgacaagtgggccatcttctgctcggcccaccagatgggcagctgccggatgggcgcgagcccacgcgacggcgccgtcgacggcgccggcgagagctgggaggccgaggggctctacgtctgcgacggcagcctgctcccgacggcggtgggcgtgaacccgatgatcaccattcagtccatcgcctactgcctctcgaacggcatcgccgacaccctgtcgcactag</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0474966, RefSeq:Os10g0474966