Os10g0545300

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Revision as of 08:47, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0545300| Description = Zinc finger, CCHC-type domain containing protein| Version = NM_001071742.1 GI:115483227 GeneID:4349279| Length = 363...")
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Gene Name

Os10g0545300

Description

Zinc finger, CCHC-type domain containing protein

Version

NM_001071742.1 GI:115483227 GeneID:4349279

Length

3639 bp

Definition

Oryza sativa Japonica Group Os10g0545300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:21767018..21770656

Sequence Coding Region

21767272..21767815,21768516..21768611,21769648..21769751

Expression

GEO Profiles:Os10g0545300

Genome Context

<gbrowseImage1> name=NC_008403:21767018..21770656 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:21767018..21770656 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcagccgcagcccgccaccaaaggaccgcaggattcgtactgagcgtacctcataccgtgatgcgccatacaggagagacagccgccgtggtcctagcagatttcctaatgatttgtgcaacaattgtaagcgtccaggacattttgctagagattgtccaaatgtggctctttgccatgcatgtgggcttccagggcacattgcagcagagtgttcttccaaagatctctgctggaactgcaaagaacctggccacatggctaacagctgcccaaatgaagggatatgccgcaactgtggcaagtcgggtcacattgcaagagaatgcagtgctccaccaatgctgccaggtgaaatgaggctttgcagcaactgctacaaaccagggcaccttgctgcggaatgcaccaatgagaaggcctgcaacaactgtaggaagagtggccatcttgctcgtaactgccctaacgagcccgtctgcaacctatgcaacgtgtcaggacatttggcccgagagtgccccaaatctgatgctatcaatgagaggggtgggcctcctcccttccgtggtggatacagtgatgtggtctgccgtgcttgcaatcaggttggtcatatgagccgtgattgcatggccggtgcgttcatgatctgccacaactgcggtggtcgtggtcacatggcttatgagtgcccatctgggaggcttatggatcggtttccccctcgccgtttttga</cdnaseq>

Protein Sequence

<aaseq>MSSRSPPPKDRRIRTERTSYRDAPYRRDSRRGPSRFPNDLCNNC KRPGHFARDCPNVALCHACGLPGHIAAECSSKDLCWNCKEPGHMANSCPNEGICRNCG KSGHIARECSAPPMLPGEMRLCSNCYKPGHLAAECTNEKACNNCRKSGHLARNCPNEP VCNLCNVSGHLARECPKSDAINERGGPPPFRGGYSDVVCRACNQVGHMSRDCMAGAFM ICHNCGGRGHMAYECPSGRLMDRFPPRRF</aaseq>

Gene Sequence

<dnaseqindica>2842..3385#2046..2141#906..1009#cacgcttctcctcctcttcctatcccaatccactcggcgacccccctcgccgtcgccgcgctgcgccggcgagcgccacgggagcagcagccctcgccgctccgcggctagctagctcgtctcctcgtccgcctcgcgcctgctggagatccgccccccgacccccgtggtaagccctggacctggggttggttttcgtctgtccctaatctgccgctgatgtgcgagccgaaatcaaatctatcgacgaggtttcgtgcggttagtgtgggatcgatcgatttgctcggtagtatctgtaaatccgctcgctgttactggtttggtcgctcgctcgtcaggtagggtttcgttcgctgctctcgcaaattggtcgtggactcgtggttcagcgcgcgtgcatgtttgtaggatgggagcgtaggttgtggagtagtcgaagcagtaggatgggagcataggttgtggaatagtcgaagcagtaggaatatgggagcataggtagtatggttgttgaacttgaatcctatggtaaagatatgatgatttgttgtagattgggcggttgtgttggggggactaggagggaaatcttgtgtatgagcaattgagcaaatggctcgatggtccttgtttgtagtaatcaaggatggaggaaggtggggcattcggagagtcgtttgccctactgttggaattcgggcctgtgcttaggaaaggatggttgctgttgtttgggctcatggagctggaattcagcctgtggttttgttgtggacaggaaggaaggaagaagggagggttgtaacagcctaacaggttgtgggagtcttggaggtgctggttttgtggtgtggtgttcgcagtttggttggagcttggagatttagaaggaaggtttgacgatgagcagccgcagcccgccaccaaaggaccgcaggattcgtactgagcgtacctcataccgtgatgcgccatacaggagagacagccgccgtggtcctagcaggtttgagttgtcttgtttaaataaataaagaaaatgagtatctggcaccgtatatcctaatgttgccgcttgctatcaacctctcttgatcatgttggcaggataaccataattgtcatttctgtttggatgtatatattctctgtttttcttccacaataattacttatgcatgtagtatttgtatagcctcttgatctaaggccatgaatccatgacctatgttgctccagtatgtaatatggatagggcgacactacatgtggtcaacccattgctgtaatctaggctaaggcaacagttagtttatctttttctttaaaggagaagttggtttgtcttcatgtcttttgtctatatctatactctatatacaattctaaaagactccagtggtggtggcagtgaatctgccaccaccacctactcactgtcatgtgggcccatgacgatcctactttcaaaatttaagcaacttcttcagagttggtcaatacccaatatacttctccatgactcccaaattgtacaaggttctccagtgtagcaagtgaccattccctctacaatgaatgaggtctctaaaaaagtgaagagttttctccttttagataaaatgaagttccccattatgatgtctatacttactatgcctagactcgaattaaaacagtcgggtatatgtatcaactatcaattctaacatgtcctgttgaaactcctatagtttattattatttcttcaaaatccattacaacgcatgggcactctgctagtaaaagtaaaagagtacatggagtacgatggacctcattccctttattggacgatcacttggtttaagtgtgcaaaatgttcaacaaggcataagctaatgttgtttcgtgattttcggaaaaccctctcatgattacattagtttgtcatgattcatgacctgaagagtgcaatttaataaacgaatttcagattcctgtcaatctgcaatgtatctgagcttttgtatcctccacttctttgttttcttccctgcagatttcctaatgatttgtgcaacaattgtaagcgtccaggacattttgctagagattgtccaaatgtggctctttgccatgcatgtgggcttccagggtaaggactatttgttattctgttttgcagatatttcatgttcttatagcctttaaagaagtcttccattattcagtatctatttgtggtgtacttgtgtttattttctcttatattgttttgccatgcttttaaaattctgtattctcaatagcactgcttgtttatgtcattgtgtatttagaaccatatccatctagattacaaatgtgcagtgaatgagacgtgatctcaataattgtgacagttcaaccgtaatgaagttgatgttaggtgaacatgatagatggctacattgatttgctaatatttaacagttttgaggtaccccatgctcctttcgtgatggatgagacttagtgttggcatcaccaattatttgagatttgttcccaaaacacgaaacatggttcattgtcttttaacagttcaatttatagtatgcatctaatatttttttattagcttattcatatttatgacaaatcagcaaaaggtagctaaagaaactgaaatgttgaagcttaagccatgcataaagttgccagaagatggttagtaacagttaagcaataacttgtggaattaaataattgtaatttaagtcacagattatagtttcatgtgatcaagaatgcttacatgcttcaccttcttatctgtgagctagcattacttactctaatgcttactttggcaggcacattgcagcagagtgttcttccaaagatctctgctggaactgcaaagaacctggccacatggctaacagctgcccaaatgaagggatatgccgcaactgtggcaagtcgggtcacattgcaagagaatgcagtgctccaccaatgctgccaggtgaaatgaggctttgcagcaactgctacaaaccagggcaccttgctgcggaatgcaccaatgagaaggcctgcaacaactgtaggaagagtggccatcttgctcgtaactgccctaacgagcccgtctgcaacctatgcaacgtgtcaggacatttggcccgagagtgccccaaatctgatgctatcaatgagaggggtgggcctcctcccttccgtggtggatacagtgatgtggtctgccgtgcttgcaatcaggttggtcatatgagccgtgattgcatggccggtgcgttcatgatctgccacaactgcggtggtcgtggtcacatggcttatgagtgcccatctgggaggcttatggatcggtttccccctcgccgtttttgagtgattttccaagtgctcaatcagatgactcttcgttgggaccggcattatgaataatcatatctcgtgctttatgccttaagaatgttagtgtatttcagatacttcagttttcatagtttgtcagcttacttgtatttgtcggttctgctgtttaactgcgatactcgttgatcggtgaggatgaattccagatgggatacttgttttaattcctacaaacttgaagttagtcttatatgccttgcagttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0545300, RefSeq:Os10g0545300