Os10g0546600

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Revision as of 08:47, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0546600| Description = Similar to Chloroplast carotenoid epsilon-ring hydroxylase| Version = NM_001071752.1 GI:115483247 GeneID:4349290| Le...")
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Gene Name

Os10g0546600

Description

Similar to Chloroplast carotenoid epsilon-ring hydroxylase

Version

NM_001071752.1 GI:115483247 GeneID:4349290

Length

4717 bp

Definition

Oryza sativa Japonica Group Os10g0546600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:21823664..21828380

Sequence Coding Region

21823767..21824288,21825241..21825537,21825670..21825867,21826203..21826304,21826415..21826555
,21826626..21826733,21827043..21827125,21827284..21827446,21828091..21828149
,21828282..21828294

Expression

GEO Profiles:Os10g0546600

Genome Context

<gbrowseImage1> name=NC_008403:21823664..21828380 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:21823664..21828380 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgccgccgccgccgccgccgtcccgtgcgtaccattcctgtgcccgcctcctccgccattggtctcgccgcgtctccgccgtggccacgtccgcctccgcctgcggccgccaaggagcagcggcggtggaggcggaggcggagcggggggagacgagccgcccatcaccacctcgtgggtgagccccgactggctcacggcgctctcccgctcggtggcaacccgcctcggcgggggcgacgactcggggatccccgtcgcctccgccaagctcgacgacgtgcgggacctcctcggcggcgcgctcttcctccctctcttcaagtggttccgcgaggaaggccccgtctaccgcctcgcggcggggccgcgggatctcgtcgtcgtcagcgatcccgccgttgccaggcacgtgctgcgtgggtacggttcgaggtacgagaaggggctcgtcgccgaggtttccgagttcctcttcggctccgggttcgccatcgccgagggcgctctctggacggtgagacgtcgatcagttgtaccatctctacacaaacgatttctctcggtgatggttgacagagttttttgtaaatgtgctgagagattagtggagaagcttgagacatctgctttaagtggcaaacctgtaaatatggaagcaaggttctctcaaatgactttagatgtgattggtttgtccttgttcaattacaattttgattccctcacatcagatagccctgttattgatgctgtttacactgcactcaaggaagcagaacttcgttctacagatcttttaccatactggaagattgatttgctgtgcaagattgttcctagacaaataaaagcagaaaaggcagttaacatcatcaggaataccgttgaggacctaattaccaaatgcaagaagattgtagatgctgagaatgaacaaattgagggtgaggaatatgtaaatgaggcagaccctagcatcctgcgattcctacttgctagccgtgaagaggtaaccagtgtgcagttacgtgatgatctattgtcaatgttagttgctggtcatgaaacaacaggctctgtactgacgtggactatttatcttctcagtaaggatccagcagcgctgaggagagctcaagcagaggttgaccgtgttctacaaggtagactccccagatatgaagatctaaaagagctgaagtacttgatgcgctgtataaatgagtctatgcggctttatccacacccacctgtgttgatacggcgagccatagttgatgatgtgcttcccggaaactataagatcaaagctggtcaagatattatgatttcagtgtacaatatacacaggtcacctgaggtttgggacagagctgatgattttattcctgagagatttgatttagagggacctgttccaaatgagacaaacactgaatacagatttatcccattcagtggaggtcctcggaaatgtgttggagatcagtttgctctcttggaagcaattgtggcacttgctgttgtgttgcagaagatggacattgagcttgtgccagatcaaaaaattaacatgactactggggccacaattcatacaaccaatggcctgtatatgaatgtaagtctgcgtaaagttgacagggaacctgattttgcactcagtgggtccagatga</cdnaseq>

Protein Sequence

<aaseq>MAAAAAAAVPCVPFLCPPPPPLVSPRLRRGHVRLRLRPPRSSGG GGGGGAGGDEPPITTSWVSPDWLTALSRSVATRLGGGDDSGIPVASAKLDDVRDLLGG ALFLPLFKWFREEGPVYRLAAGPRDLVVVSDPAVARHVLRGYGSRYEKGLVAEVSEFL FGSGFAIAEGALWTVRRRSVVPSLHKRFLSVMVDRVFCKCAERLVEKLETSALSGKPV NMEARFSQMTLDVIGLSLFNYNFDSLTSDSPVIDAVYTALKEAELRSTDLLPYWKIDL LCKIVPRQIKAEKAVNIIRNTVEDLITKCKKIVDAENEQIEGEEYVNEADPSILRFLL ASREEVTSVQLRDDLLSMLVAGHETTGSVLTWTIYLLSKDPAALRRAQAEVDRVLQGR LPRYEDLKELKYLMRCINESMRLYPHPPVLIRRAIVDDVLPGNYKIKAGQDIMISVYN IHRSPEVWDRADDFIPERFDLEGPVPNETNTEYRFIPFSGGPRKCVGDQFALLEAIVA LAVVLQKMDIELVPDQKINMTTGATIHTTNGLYMNVSLRKVDREPDFALSGSR</aaseq>

Gene Sequence

<dnaseqindica>104..625#1578..1874#2007..2204#2540..2641#2752..2892#2963..3070#3380..3462#3621..3783#4428..4486#4619..4631#actgccaactgctcatctcgtctcgtctctctctccccccaatccggcgaccccaattccccaaaatccatctcgaatccctagctcgcgggcggccagtgcgatggccgccgccgccgccgccgccgtcccgtgcgtaccattcctgtgcccgcctcctccgccattggtctcgccgcgtctccgccgtggccacgtccgcctccgcctgcggccgccaaggagcagcggcggtggaggcggaggcggagcggggggagacgagccgcccatcaccacctcgtgggtgagccccgactggctcacggcgctctcccgctcggtggcaacccgcctcggcgggggcgacgactcggggatccccgtcgcctccgccaagctcgacgacgtgcgggacctcctcggcggcgcgctcttcctccctctcttcaagtggttccgcgaggaaggccccgtctaccgcctcgcggcggggccgcgggatctcgtcgtcgtcagcgatcccgccgttgccaggcacgtgctgcgtgggtacggttcgaggtacgagaaggggctcgtcgccgaggtttccgagttcctcttcggctccgggttcgccatcgccgagggcgctctctggacggtgctctctctctctctctctgtctctcttcgtgttctggactaatgctgtttttgaggggatggctaagtgactatcctatagtagtatagtgctgtgaaatgttcctgattggcttaaacctgcaaaaattatagcggattatgtcgttgtagtaaatccttagaatttggttatttttagattgagttaccaaaggatgtgggccattcgattgtttgttaagcggtaattgtggagtagttagagtttttgacattaccccgtgattcctttatggctgtcctttttttttctggataatctattctgtattgatgtgctggtggttcatagcatagcatcctagggatttggaaataaatacctaactttttaccgctcccagaagatattgcctctggtcctcacttgataaggatagaaatttaggtatggagtgaattttgcatagttaggtgaagttaacagttttcctctaactttgtaatttggttgttttaagctgtttgatgtagccatttagtttctcgtatgtgttgaagaaatttccctgcattttgaattggataggacacacgaaggtattgccttgcaatgttattagatcttatgtaatgttatcagaagtcaatgttattacccatttagtattacagtagcttctcacaagctattaacagaatataggtgctcctgtggacatgaggatattctgtagtgtactagagtagtatttcattttgtagctggaacagtgaaactagtataaaaaaatatgaaaacaaaaaggtgattgtgggttggttctgaaaggtgaaaggttcctatatctaattcacatggtttggtgttttcttacaatcccttgtttgccccttacctttttatgtgctacttacctaattgataatctcttgttcaacttacacttgttttggtatctgttcaggtgagacgtcgatcagttgtaccatctctacacaaacgatttctctcggtgatggttgacagagttttttgtaaatgtgctgagagattagtggagaagcttgagacatctgctttaagtggcaaacctgtaaatatggaagcaaggttctctcaaatgactttagatgtgattggtttgtccttgttcaattacaattttgattccctcacatcagatagccctgttattgatgctgtttacactgcactcaaggaagcagaacttcgttctacagatcttttaccatactggaaggtaatgttccttttgccatgttattttctaaaaaatccaattatggttggcctatctaacttctagtgagacgaaattgctgactgatgtcgctgactgatgtctgatgtagcccttgtttgttcttgatagattgatttgctgtgcaagattgttcctagacaaataaaagcagaaaaggcagttaacatcatcaggaataccgttgaggacctaattaccaaatgcaagaagattgtagatgctgagaatgaacaaattgagggtgaggaatatgtaaatgaggcagaccctagcatcctgcgattcctacttgctagccgtgaagaggtactttgactaatctaaagccttgatgttgttttacagcaattgtagtcttcattgatttttgtactagtaggaagctattccctcatttcatagaattttgtgacatggacttattattgatttttgaatcttataagacagtttccatgcacagttcctttgtttttgtgggtaatactttcacggaatccacaaagcttttgtttcaaactaatgatgcatttgaatggaacttcctattaatactctttttcactatctcacatgcatgcatcttgcttttgacttgttttactgccgttacctaacatgcttttctttatgcggtccaggtaaccagtgtgcagttacgtgatgatctattgtcaatgttagttgctggtcatgaaacaacaggctctgtactgacgtggactatttatcttctcagtaaggtactcccttattgcttgcgccttgcgctaatgatttaacaagtaaaacgttacttaagataagctatcccttaactatatgttgactactcagtattgcactactgaaggatccagcagcgctgaggagagctcaagcagaggttgaccgtgttctacaaggtagactccccagatatgaagatctaaaagagctgaagtacttgatgcgctgtataaatgagtctatgcggctttatccacacccacctgtacattccttgtgcttagtcaaccaacttcagagttagtttaggttactcaagggcttcttgttaacaggtgttgatacggcgagccatagttgatgatgtgcttcccggaaactataagatcaaagctggtcaagatattatgatttcagtgtacaatatacacaggtcacctgaggtacgttttccatctgaatattggagcacatgcattattgattggcgttttttaagctctttatgccaattgtttagagaaagtaccatatctatgtccagcatatttgtgaaatgtagattttctttagcagcgcattgcagggttatctgctcactagttgaaatggtgtgactggcaatgaaatttatgtcacagtgaataagcaatcattctgctgtctttatgatattgtcatcctcttagcaatgtctgaacgaccataacattatacattgttacaattgattgtttgttccttatgcaaaggtttgggacagagctgatgattttattcctgagagatttgatttagagggacctgttccaaatgagacaaacactgaatacaggtcatcttgagatatttttttaacctgtttttacaacgtgtccacttatcatcgaactgactttaaatcatctggacacacacacacacacacacacacacacacacacacacacacaaattaaactatgctgcctttctgtcacttctctttttcagatttatcccattcagtggaggtcctcggaaatgtgttggagatcagtttgctctcttggaagcaattgtggcacttgctgttgtgttgcagaagatggacattgagcttgtgccagatcaaaaaattaacatgactactggggccacaattcatacaaccaatgtaagtgttccactgtcaatgcttatgactgctagcagatggcattaaatgttgaaatataacaaatactaaaccacttacctgtctactactccctccgtttcacaatgtaagtcattctagcatttttcacattcatattgatgttaatgaatcctgtctagattcattaacattaatatgaatgtgggaaatgatgacaagattcattaacatcaatatgaatgtggaaaatgctagaatgacttacattgtaaaacggaggaagtaggaaagaacctagaacgagataattatcgtcacacttgtaaagggcacatgatctgagtttataatttgtctagatcagctttagagtttagaagtagtcacttttcctgcatatttcaccataccactcctcgcccaaaataaataaataaatatataaaaactagttgaaacttggtcgaggaaattggaaaatctggtcatgttgcaattggaactattgcatatagtcactgtaagttgccagcttctacctgaatgggcagacgggatgctggaaatgaagaaatatttgcttcaattgacagcagaactcaatcctcccatcttattcagatctgaaaaatacactaaaatactcttctttctcgcagggcctgtatatgaatgtaagtctgcgtaaagttgacagggaacctgattttgcactcaggtacatatgcaccatgatgattcatgaatgttgctttaatgtatcagttaatccgtttcaagcccaaattttactaggtggtcgttgtacatactttccatagtttaacatactatcattttcctctttcagtgggtccagatgaacggaaggaaacagcttcaaagcagaaaagcaaaagatgtacatcgacacacatgagatgtaatctacaagtttaaatttattgct</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0546600, RefSeq:Os10g0546600