Os10g0567100

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Revision as of 08:49, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0567100| Description = Similar to Chlorophyll b synthase (Fragment)| Version = NM_001071962.1 GI:115483519 GeneID:4349430| Length = 3634 bp...")
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Gene Name

Os10g0567100

Description

Similar to Chlorophyll b synthase (Fragment)

Version

NM_001071962.1 GI:115483519 GeneID:4349430

Length

3634 bp

Definition

Oryza sativa Japonica Group Os10g0567100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:22928849..22932482

Sequence Coding Region

22929155..22929336,22929487..22929782,22929870..22929982,22930097..22930281,22930695..22930842
,22930926..22931204,22931280..22931384,22931747..22931992,22932394..22932468

Expression

GEO Profiles:Os10g0567100

Genome Context

<gbrowseImage1> name=NC_008403:22928849..22932482 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:22928849..22932482 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaaaccactgtgtctttgctgccgcacctgctcgtcaagccttcctcctccttcagctgttgcttcacaatgggcattggtcgtcgatatggaagaatcaaggtgtatgcagtgctcggtgatgatgaagctcaacatgccaagaacaacatgaggggggccttgttccatgtcgataaccccgggccaatggctcccattgcaaaaggcaacttcttggatgttaaccaggcccttgaggtggtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatggttctgcacaacaaggtggtagaggttctcaaatctttagcaatagagttcaagtcaaatggaaccttgaggaaagagcttgcagagttgcaggaagaattggccaaagctcacaatcaggttcatttatcagaaactagagcatcatctgcacttgataagttagcacaagcggataacctggtgaatgacagactgttgcaagacggaggctctagtgcatctatagacaactatgtttctcttgcttcaagaacgtcatcagcgtcccgttttgtgaacaagaaaactctgcgtccgagtctggacgtgtctggtccagtgcagccatacaatcccaatctgaaaaacttctggtacccagttgtcttctccggtgacctgaaagatgatacaatggtaccaatagattgttttgaggagcagtgggtaattttccgaggaaaggatgggagacctggatgtgttcagaacacatgtgctcacagagcctgccctcttcatcttggctcagttagtgagggtagaatccaatgccctttccatgggtgggagtattcaactgatggaaaatgtgagaaaatgccagccacgaagttgctcaatgtgcgcatccggtcattgccatgctttgagcaagaaggcatggtttggatctggcctggtgatggcacaccggagtcgactatcccttctctgcagcccccttcaggatttacaattcatgcagagatggtgatggagctaccggtggagcatggacttctgctggacaatctattagatattgctcatgctccttttgctcatacgtccacctttgccaagggttggagtgttccaagcttggtgaagttcttgacacctgcatctgggctccaagggtactgggatccttaccccatcgacatggagtttcgaccgccatgcatggtcttgtcaaccactggcatctcaaagcctggaaaactagagggaaagagcatcaagcaatgttccacacatctccaccaactccatatctgcttgccctcctccaggaataaaaccaggatgctgtaccagatgtccctcaactttgctccctggctcaagcacatccctttcatgcacatactatggtcacattttggtgagaaggtcttgaatgaggacctacggcttgtgcttgggcagcaagagcggatgataaatggcgcgaacgtatggaactggccagtgtcatatgacaagcttggtatccggtatcggttatggagagacgccattgagaggggagcaaacaggttgccattcaataaccaaagtgagagtggatcatag</cdnaseq>

Protein Sequence

<aaseq>METTVSLLPHLLVKPSSSFSCCFTMGIGRRYGRIKVYAVLGDDE AQHAKNNMRGALFHVDNPGPMAPIAKGNFLDVNQALEVVRFGIQYCDWRARQDLLTIM VLHNKVVEVLKSLAIEFKSNGTLRKELAELQEELAKAHNQVHLSETRASSALDKLAQA DNLVNDRLLQDGGSSASIDNYVSLASRTSSASRFVNKKTLRPSLDVSGPVQPYNPNLK NFWYPVVFSGDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVQNTCAHRACPLHLGSVSE GRIQCPFHGWEYSTDGKCEKMPATKLLNVRIRSLPCFEQEGMVWIWPGDGTPESTIPS LQPPSGFTIHAEMVMELPVEHGLLLDNLLDIAHAPFAHTSTFAKGWSVPSLVKFLTPA SGLQGYWDPYPIDMEFRPPCMVLSTTGISKPGKLEGKSIKQCSTHLHQLHICLPSSRN KTRMLYQMSLNFAPWLKHIPFMHILWSHFGEKVLNEDLRLVLGQQERMINGANVWNWP VSYDKLGIRYRLWRDAIERGANRLPFNNQSESGS</aaseq>

Gene Sequence

<dnaseqindica>3147..3328#2701..2996#2501..2613#2202..2386#1641..1788#1279..1557#1099..1203#491..736#15..89#actgctactgctccatggaaaccactgtgtctttgctgccgcacctgctcgtcaagccttcctcctccttcagctgttgcttcacaatggtgatctctttttgtttcttttttggattcttcggctatctttgaatcagtttatggttctttggccatgggagaaacttctcattcctttcttgcttggagtttcagttgttgttctttttctttgcagttcatctctatttctgcacatgtgcacatcaatctaatatcagtatgttgtttactaagctatttcctccgtttcacaatgtaaatcattctagcatttcccacattcatattgatgttaatgaatctagacttgtgaaatatgaatgtgggaaatgctagaattgtgaaacggagggagtaccagataatccctacagtaatgcagctgtctgcactgcaataaaacaaatttcgtttgatgaggttacctcctatgtgaaaccatgcagggcattggtcgtcgatatggaagaatcaaggtgtatgcagtgctcggtgatgatgaagctcaacatgccaagaacaacatgaggggggccttgttccatgtcgataaccccgggccaatggctcccattgcaaaaggcaacttcttggatgttaaccaggcccttgaggtggtccgattcggcatccagtactgcgattggagggcgcggcaggacctcctcaccatcatggttctgcacaacaaggtatgaaatagtatatatgaaatattggccatgcagaaagtttcagatgaaaggtctcagggcctgttcactttgatgccaaaaaaaaccttaccaaattttgtcattaccaaaattttggcaggatttcctatatagttaccaaaatttggcaacaaactaaatgtagccacttttctggcaactttaccaaaatttggtaaggttgaaaatgtcatcaaagtgaacaggccctcaatttgcataccctggattttactggtcatgaatttcagtttttgactgaatgctgaatagtgctcgaggttgaagttgtggacgactgacacagattcttccacgaattgttaacattaatgcaggtggtagaggttctcaaatctttagcaatagagttcaagtcaaatggaaccttgaggaaagagcttgcagagttgcaggaagaattggccaaagctcacaatcaggtattgcacttgcaggagtcaaatgataacccttcaatctcatctggattctgatgttttatttgtctgatccaggttcatttatcagaaactagagcatcatctgcacttgataagttagcacaagcggataacctggtgaatgacagactgttgcaagacggaggctctagtgcatctatagacaactatgtttctcttgcttcaagaacgtcatcagcgtcccgttttgtgaacaagaaaactctgcgtccgagtctggacgtgtctggtccagtgcagccatacaatcccaatctgaaaaacttctggtacccagttgtcttctccggtgacctgaaagatgatacaatggtaacgcaatgaatgattcaggcatttacaatgtccggagtaccagttaatgatatgttttgatgtggtctgtgtgttctcaggtaccaatagattgttttgaggagcagtgggtaattttccgaggaaaggatgggagacctggatgtgttcagaacacatgtgctcacagagcctgccctcttcatcttggctcagttagtgagggtagaatccaatgccctttccatggtaagaaaaaagaaactttatatgaaatttcattttggcacgcttctgctgtttttacaatctgattttcaaagcatcagctagcactatggctatatgaaaaaaaaaagctttcttcctttttagaaacacaagcttgttgcactccacaatgtacatacattgtgtgatgacactgataatttataatatttatgtaaaacacacaataaaatggttcttctaaaggctcggaactgacataaattgcaatcttgaaggtacatgaaaaatgattcagaaccaaaatactggaatatttgaggatttgtaacaaagaattactctttttttaaagtcttcccatgatcataatgttcccaataaagtggtagtgcaagtaatatttctgatttccttttcatacccttcagggtgggagtattcaactgatggaaaatgtgagaaaatgccagccacgaagttgctcaatgtgcgcatccggtcattgccatgctttgagcaagaaggcatggtttggatctggcctggtgatggcacaccggagtcgactatcccttctctgcagcccccttcaggatttacaattcatgcagaggtaaaacgaaatcatgtcatactgcagcaatcttccatggtgaaagtgtcctgtgtttttcaagttttttttactggactgtaaagtaatggaatttatcttcatcatcaacagatggtgatggagctaccggtggagcatggacttctgctggacaatctattagatattgctcatgctccttttgctcatacgtccacctttgccaagggttggagtgttccaaggtatttacatacatatcaactaaggacaactggccattgaaaatttttcacaaatcatcatgctgatgctatattcatctttgtcagcttggtgaagttcttgacacctgcatctgggctccaagggtactgggatccttaccccatcgacatggagtttcgaccgccatgcatggtcttgtcaaccactggcatctcaaagcctggaaaactagagggaaagagcatcaagcaatgttccacacatctccaccaactccatatctgcttgccctcctccaggaataaaaccaggatgctgtaccagatgtccctcaactttgctccctggctcaagcacatccctttcatgcacatactatggtcacattttggtgagaaggcaagtctcaaaattttcagagcaacttggtagtcactgatctccatgtcatctcatgttagcttgcaacttactacagtaaagttttttccgctgtttcacaccgtcgtctataagacatcaatggtaatcttgtatgatcttctgcaggtcttgaatgaggacctacggcttgtgcttgggcagcaagagcggatgataaatggcgcgaacgtatggaactggccagtgtcatatgacaagcttggtatccggtatcggttatggagagacgccattgagaggggagcaaacaggttgccattcaataaccaaagtgagagtggatcatagtagctgcaatgctgcactgacagtagcctctttcaactcttgtcgcatttcttggcgagatgaagatgactatggccagaactatagtcacttagtcagaatatgtatatgcgcagtttgtttaggcgtgctgcgttcatccctgcgtggttcatccgcctgagcttctggagaggaaagctaatggaaggaagggttgatagactgataggcgacaattgttatgtgtaattttaagtgtactagtgagcgtgcatatggaatccatgtgtgtaatttcaagtgtactaatcagtgtgcacgtgg</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0567100, RefSeq:Os10g0567100