Os11g0169400

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Revision as of 09:02, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0169400| Description = Zinc finger, C2H2-type domain containing protein| Version = NM_001072383.1 GI:115484378 GeneID:4349886| Length = 227...")
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Gene Name

Os11g0169400

Description

Zinc finger, C2H2-type domain containing protein

Version

NM_001072383.1 GI:115484378 GeneID:4349886

Length

2270 bp

Definition

Oryza sativa Japonica Group Os11g0169400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:3340670..3342939

Sequence Coding Region

3340697..3341306,3341762..3342125,3342545..3342821

Expression

GEO Profiles:Os11g0169400

Genome Context

<gbrowseImage1> name=NC_008404:3340670..3342939 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:3340670..3342939 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcagggttggaagctggggatccatggcgttctactcctcgtcttcttcctccagaagccaaccagtgtctgcagcagaaggcaagaatggtggcaagaaggagaagaggaggagcagcatcagcaggagcatcacgtgtgccggatcgatctgcagcaccaaggagagttcggtgtcgagcagggggagaggccggcgccgccggagcggcggcggcggcggcggcgatggcggcggcggagggagcacgtcgagcaggtcgctgatgggtcccgggtaccacggcgactccgcggcggctgtctccgcgtcgtcgtcgttcaactctgtgatgacggcggcgacatccgccaccgcgaccaccaccaccaccaccaccagctcgtcggcaacctcgccgccgtcggcgctgtcctcgccgctgtcatccatcggcggctcgttcagggcgatgcagatcaggaagctctccggctgctacctccactgccactcggtgctcgacccgcgcaccctcgccgccgtcgtcttctcctgccccgactgcgacgaggtgttcgtcaagcccgactccctcgagctccatagatcaaccagacacgcagtttcagagctcggggcggacgacacgagcaggaacatcgtggagatcatcttccagtcgagctggctgaagaagaacgcgccggtgtgcaggatcgagaggatactcaaggtgcagagctcggacaagaccatcaagaggttcgagcagcacaaggaggcggtgaaggagaaggcgaggagcgccggcgacgaggccgggaggaaccccaggtgcgtcgccgacggcaacgagctcctcaggttccactgcaccaccttcgcctgctccctcggcctcgccggcggcaccgccctctgctgcgcctcctcgtcgccgccgccgctgcactgcaagctctgcagcatcatcaaagacggattcagggtggatggcaatgggaggatcacgacgatggcgacgagcgggcgggcgcacgacacggcggaggtttcgccggacggcgagaagagggcgatgctggtgtgcagggtggtcgccggcagagtgaagaagctccacagcagcaattcttcagaggatcatgactgtgactctgtcagcccctgctcagaaggggtttactcagatttggatgaactgttcgtgttcagtcccagagctatacttccttgctttgttgtcatatacagtggctactag</cdnaseq>

Protein Sequence

<aaseq>MSRVGSWGSMAFYSSSSSSRSQPVSAAEGKNGGKKEKRRSSISR SITCAGSICSTKESSVSSRGRGRRRRSGGGGGGDGGGGGSTSSRSLMGPGYHGDSAAA VSASSSFNSVMTAATSATATTTTTTTSSSATSPPSALSSPLSSIGGSFRAMQIRKLSG CYLHCHSVLDPRTLAAVVFSCPDCDEVFVKPDSLELHRSTRHAVSELGADDTSRNIVE IIFQSSWLKKNAPVCRIERILKVQSSDKTIKRFEQHKEAVKEKARSAGDEAGRNPRCV ADGNELLRFHCTTFACSLGLAGGTALCCASSSPPPLHCKLCSIIKDGFRVDGNGRITT MATSGRAHDTAEVSPDGEKRAMLVCRVVAGRVKKLHSSNSSEDHDCDSVSPCSEGVYS DLDELFVFSPRAILPCFVVIYSGY</aaseq>

Gene Sequence

<dnaseqindica>28..637#1093..1456#1876..2152#aaggagaaagacaaggatggcaagaagatgagcagggttggaagctggggatccatggcgttctactcctcgtcttcttcctccagaagccaaccagtgtctgcagcagaaggcaagaatggtggcaagaaggagaagaggaggagcagcatcagcaggagcatcacgtgtgccggatcgatctgcagcaccaaggagagttcggtgtcgagcagggggagaggccggcgccgccggagcggcggcggcggcggcggcgatggcggcggcggagggagcacgtcgagcaggtcgctgatgggtcccgggtaccacggcgactccgcggcggctgtctccgcgtcgtcgtcgttcaactctgtgatgacggcggcgacatccgccaccgcgaccaccaccaccaccaccaccagctcgtcggcaacctcgccgccgtcggcgctgtcctcgccgctgtcatccatcggcggctcgttcagggcgatgcagatcaggaagctctccggctgctacctccactgccactcggtgctcgacccgcgcaccctcgccgccgtcgtcttctcctgccccgactgcgacgaggtgttcgtcaagcccgactccctcgagctccatagatcaaccagacacgcaggtatcatcgcatcaccatctcaaaaccatcaaaatttcccacagtatattcgctcgtttcgtacatgccacctaaatagtcataaaaaaatttaaaaaaaatttggcaacattgattaatatgaaatatatcactccactaatatacaattttaaatttaacttctacaagttataataaaaataacaaatatagctaatatagctgcgagtgtatagtaactatttttagtttaatttatttttttcaacttgtagaaaatgaatttggttttacatgtttgtggatgatatatttcgtattaatctattaaactttttaaaaaatttaataactatttagaataacatggaaataacgagaggatgtctctcgagagatagaaaatccacatcccactgaatcttctcatctaaaaactaacaatccatccattgattcgattgggattgcagtttcagagctcggggcggacgacacgagcaggaacatcgtggagatcatcttccagtcgagctggctgaagaagaacgcgccggtgtgcaggatcgagaggatactcaaggtgcagagctcggacaagaccatcaagaggttcgagcagcacaaggaggcggtgaaggagaaggcgaggagcgccggcgacgaggccgggaggaaccccaggtgcgtcgccgacggcaacgagctcctcaggttccactgcaccaccttcgcctgctccctcggcctcgccggcggcaccgccctctgctgcgcctcctcgtcgccgccgccgctgcactgcaagctctgcagcatcatcaaagacggattcaggtaactcgaccaagatgttcagagcccataattctttttttcacaaattcatactacctccgtttcaaaatgcttgatgtctttaatttttgtataacgtttgactgttcatattatttaaaaatttagtatagatatataaaagtatatgttaagattatagtttctttaataacaaaacaaaatacataatatctatataattcttagacgaatgttcagatgttatatgaaaagtcaacggtatcataggatggatggagtatttcgtaataggttaatgtgtattttactgacaatatggatccgatcccacacgtcagtgagacaatgggtgtcatttaaaagatttatgaagaacattttgttgaattataagttgtttggtttgattgatgaacaaaaaaaaaattcatcagggtggatggcaatgggaggatcacgacgatggcgacgagcgggcgggcgcacgacacggcggaggtttcgccggacggcgagaagagggcgatgctggtgtgcagggtggtcgccggcagagtgaagaagctccacagcagcaattcttcagaggatcatgactgtgactctgtcagcccctgctcagaaggggtttactcagatttggatgaactgttcgtgttcagtcccagagctatacttccttgctttgttgtcatatacagtggctactagatcaaagaaaaccagtagaatagcttgattttgccactgttcttaatctagtttctttctctgttgtaggttgtagtatgtttacttacttcatgttcatcaagtcagatcataatgc</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0169400, RefSeq:Os11g0169400