Os11g0216300

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Revision as of 09:04, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0216300| Description = ABC-1 domain containing protein| Version = NM_001074041.1 GI:115484730 GeneID:4350081| Length = 5518 bp| Definition...")
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Gene Name

Os11g0216300

Description

ABC-1 domain containing protein

Version

NM_001074041.1 GI:115484730 GeneID:4350081

Length

5518 bp

Definition

Oryza sativa Japonica Group Os11g0216300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:6051169..6056686

Sequence Coding Region

6051510..6051580,6051662..6051731,6051842..6051989,6052066..6052178,6052441..6052512
,6052603..6052730,6053036..6053231,6053504..6053683,6053778..6053918
,6054154..6054318,6054698..6054844,6054951..6055040,6055163..6055369
,6055452..6055774,6056531..6056684

Expression

GEO Profiles:Os11g0216300

Genome Context

<gbrowseImage1> name=NC_008404:6051169..6056686 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:6051169..6056686 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>tgcttctctctctcttgcccccatccatggctacgtgtactctccctctgccaccacaaaagtcgcgctttttccccgcctaaatcgtggaagatcagtgcggcggtggtgcgagctcctcaatccccagcccggccaagaattagcgggaaagatacagtttaccgtcccttgagcatggagctctgcacctcttctgtatcaggttcggtacaatggtctcgtatatcagcatttgactgtcgaactcggtcccatggatacgcgagttcaagttcctgggtttgtcaaaggaggagaaaaacatccttttatgtcatgaatgctgcgtcgactggtgctctgccccctacaaagaagctaatcccacgaactaatgtcagaaacatatccggtgataagcccagcagtgcactggagcaacttgatatagaacgtggcgtctgtatccctttccggaagtacactccagagatggtcagaaatagagtcttgggatcaagaggttctgtgctgtccctcgctagtcgaggcgtggagataatttggaaacttggcctttactggtcagctctaatgtatgacttcttggttgggcgagatgaagagattgttccattccgtgcccgccagctccgcaatcttctgtgtgatttgggcccttcattcattaaagcaggacaggttttagccaacaggcctgatattattcgagaggattatatgaatgaactctgtatcttgcaagatgatgttcctccatttcctaaccaggtagctttttccataattgaggaggaacttggacagccattagagagattgttcagcagaatctcatcacggacaatagcagctgcaagcttaggccaagtttaccgtgctacacttagagaaactggcgaggatgttgctattaaggttcagaggccaggaattgagcccatcatatatcgagatcttttcctgttccgaactctcgcatcctttttgaatggaattagccttcaaaaactaggctgcaatgcagagcttattgtggatgaattcggtgaaaaacttttggaagaacttgattacacccttgaagctacaaacatcgaggacttcttggaaaatttcaaggatgatccaactgtcaagatccctcaagtatataagcagtattcaggttctcgtgttttagtaatggaatggatagatggaatcagatgcactgacccacaggctataaaagaagcaggtattgatgtggagggctttctcacagttggagtaagtgctgcattgcgtcagttgcttgaatttggccttttccatggagatccacatcctggaaatatctttgcgatgcgtgatggtcgtattgcttatgttgactttggcaatgtggctgtcctaagtcagcaaaacaaacaaatcctaatcgatgctgttgttcatgctgtaaatgaagactatgctgaaatggcaaatgacttcacaaggcttggctttcttgctagtggaacagatgtgtccccaattgtcccagctctggaagctatttggcaaaactcagccgggaaaggcttagcagacttcaatttccggagtgtaaccgggaagtttaatcagcttgtgtacaattaccccatccgcatcccagaaaggttttctttggttattcgttcattgttgacacaagaagggatttgcttcactctgcagcctgattttaagtttcttgaggttgcatatccatatgtagcaaagcgtctcttgacagatccaaaccctgctctccgtgaacggctgatacaggtattattcaaagatggtctgttccaatggaaacggctagaaaaccttatagttcttgccaaggaaaacgtgtccaagatgagcagcaatcctgcactaaaaaagaatagctcgcaaattgagagaaatcgacaaatggagaagaaattagatctcaccgacacaataaaagacggagcacgtttgttccttatcgacgctggcatcaggagacaacttattatggctttcacggaggactccaagttgcatgtagaagagcttgttgatgtgtacagactggtcgaagatcaaatcgacattccatcagttgctctcgaggttatccaagatttaccatccgtcgcgcgcgatttcatgctttcttggagcgattccatcctgtcagatcggcaatactga</cdnaseq>

Protein Sequence

<aaseq>CFSLSCPHPWLRVLSLCHHKSRAFSPPKSWKISAAVVRAPQSPA RPRISGKDTVYRPLSMELCTSSVSGSVQWSRISAFDCRTRSHGYASSSSWVCQRRRKT SFYVMNAASTGALPPTKKLIPRTNVRNISGDKPSSALEQLDIERGVCIPFRKYTPEMV RNRVLGSRGSVLSLASRGVEIIWKLGLYWSALMYDFLVGRDEEIVPFRARQLRNLLCD LGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNQVAFSIIEEELGQPLERLF SRISSRTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGI SLQKLGCNAELIVDEFGEKLLEELDYTLEATNIEDFLENFKDDPTVKIPQVYKQYSGS RVLVMEWIDGIRCTDPQAIKEAGIDVEGFLTVGVSAALRQLLEFGLFHGDPHPGNIFA MRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLASGTDVSP IVPALEAIWQNSAGKGLADFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGIC FTLQPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDGLFQWKRLENLIVLAKEN VSKMSSNPALKKNSSQIERNRQMEKKLDLTDTIKDGARLFLIDAGIRRQLIMAFTEDS KLHVEELVDVYRLVEDQIDIPSVALEVIQDLPSVARDFMLSWSDSILSDRQY</aaseq>

Gene Sequence

<dnaseqindica>5107..5177#4956..5025#4698..4845#4509..4621#4175..4246#3957..4084#3456..3651#3004..3183#2769..2909#2369..2533#1843..1989#1647..1736#1318..1524#913..1235#3..156#attgcttctctctctcttgcccccatccatggctacgtgtactctccctctgccaccacaaaagtcgcgctttttccccgcctaaatcgtggaagatcagtgcggcggtggtgcgagctcctcaatccccagcccggccaagaattagcgggaaaggtgagaattttcttgcccccacccgcgccgtgcccccgtgccgtcttcttggggttgggggtggttccccattcggatgaactgtgcttgttcgagtgatttgcgtgtgcagatatgattttttggttttttttgttttgggctgtttcaattcactgcggtagaggtcttgctactcctagacggtttgtggttgcttcctagtccttcttcttctcctctggccagcgaattcaattctccggcgaggtcgatccgtgctcgcgcaggttggggccatgttggacctccgcatcaggtttgggggtgggagtgagggcgccgggtcggtcgcgttctggatgtggatcccgccgccgcactcgctggcgtcggaggtgatctcgtggaggagcatatggcgtggtggaagtgggcgagcttgacggcgagctgggctgcattaggtggtgggcagcgcggcggcgcccatgggtgtaggttatcacgctcggatgctcttacaagacgcctccaagaactcaatttgtggttctgaacttctctgaaaaaagaagtctgttggttgtaaattgggaagggcaattcatgttgaataacagcaaataggggtgagctcagggagtgataattagtgatttgtttttctcctcaattgaattttaggaagtagggttatagtgttttctgtagctagggatttgacattggagattatatttcaagtgtgatgatgtagcttgttattttgtccagatacagtttaccgtcccttgagcatggagctctgcacctcttctgtatcaggttcggtacaatggtctcgtatatcagcatttgactgtcgaactcggtcccatggatacgcgagttcaagttcctgggtttgtcaaaggaggagaaaaacatccttttatgtcatgaatgctgcgtcgactggtgctctgccccctacaaagaagctaatcccacgaactaatgtcagaaacatatccggtgataagcccagcagtgcactggagcaacttgatatagaacgtggcgtctgtatccctttccggaagtacactccagagatggtattgaacacttcaaatggttatatttacagggttagttttctgaaatccgttgtaaatatgctcatttccaaattgctaggtcagaaatagagtcttgggatcaagaggttctgtgctgtccctcgctagtcgaggcgtggagataatttggaaacttggcctttactggtcagctctaatgtatgacttcttggttgggcgagatgaagagattgttccattccgtgcccgccagctccgcaatcttctgtgtgatttgggcccttcattcattaaagcaggacaggttatattcttctctttctgataaatccctaaatctcccaagacgataacactccaaatatctctgctgcttcctttgtatattacagtccttaatgcatttggtcccattgtttttgttaggttttagccaacaggcctgatattattcgagaggattatatgaatgaactctgtatcttgcaagatgatgttcctccatttcctaaccaggtacatgtgtactgtaaaaattccatgcatgtttgtggaagattatacttactaggactgcggaggcatcaggatgattaacttagcttattgatcgaattgacaggtagctttttccataattgaggaggaacttggacagccattagagagattgttcagcagaatctcatcacggacaatagcagctgcaagcttaggccaagtttaccgtgctacacttagagaaactggcgaggatgttgctattaaggttcatgtttgcttcattttcttgtatttgtttactactttagtactttatttcttttgtgatttgagatgatcgaaaagttctatgacttgatgcttcatttttaccatggtcctctatctctatcatggcccatggatgagtacaagcgtgtttctcaccctaatgaaattcgtgaccattttacaccttatgagttgtgaaaaagaatttagttaaatgtttatacatgcttcagtagaatgtccagtcgccgactctatcagtagtgtcttggactagtagtttgtgacatttttaatgtttgttcttgtactcatgcataatataatgtttattgttgtgcttatttattgattactgtgattcaaaataacaggttcagaggccaggaattgagcccatcatatatcgagatcttttcctgttccgaactctcgcatcctttttgaatggaattagccttcaaaaactaggctgcaatgcagagcttattgtggatgaattcggtgaaaaacttttggaagaacttgattacacccttgtaagctttttgttcctttttattggtgttattatgttctcaacataatgaattagctattggacagtaggtatcacaatcttacatgtgttgtcaatggtgtccactttcttttgttgggaagacagtaccggaaaagagaaaacaatttcattgacaaactcttatatctctcatggcttattttgtcatggatggaatgttgacgtgctttctattccatacaatgctttaggaagctacaaacatcgaggacttcttggaaaatttcaaggatgatccaactgtcaagatccctcaagtatataagcagtattcaggttctcgtgttttagtaatggaatggatagatggaatcagatgcactgacccacaggtttgtagcattatttctagttttttttatcaaaggtgaaatagttcagtgtaatttttctcgtgtttttgagtccaaaagtttatttgtacaggctataaaagaagcaggtattgatgtggagggctttctcacagttggagtaagtgctgcattgcgtcagttgcttgaatttggccttttccatggagatccacatcctggaaatatctttgcgatgcgtgatggtcgtattgcttatgttgactttggcaatgtggctgtcctaagtcaggtatgaaatattgctttttagcagtggtaaaattcatctttgaatttttcagttaattggattagtaatattttttgtcaatactcaatttgataaataatatctgattcatgcctactatgaaaaaaaaatcgattctatagtaaataatgtacattggtcatttacagtcctgcaatctgttaaaactgcagaaatatatcttatcaggcctgttggctaaaacagaaattggctaacaggttgttctgctattgttttcctatgtgcagcaaaacaaacaaatcctaatcgatgctgttgttcatgctgtaaatgaagactatgctgaaatggcaaatgacttcacaaggcttggctttcttgctagtggaacagatgtgtccccaattgtcccagctctggaagctatttggcaaaactcagccgggaaaggcttagcagacttcaatttccggagtgtaaccggtaaggctgtaatgcttcgcagtttatctattaccgagaactggatgtgtgcttgctttgttcttcatgatctatatcagcattttttttcaatgcatggtcatcaaattatattactgctgaaggtggacatttctgatcatgattcatggatattattttgatggcattccttgtggcacccacacttgttagaatgtttgcttgattatttttgttctattaatcatgaatgcttaggataagactgctttctatattcatatatatttcatcctctaatttatttataaccaaatttatagggaagtttaatcagcttgtgtacaattaccccatccgcatcccagaaaggttttctttggttattcgttcattgttgacacaagaagggatttgcttcactctgcagcctgattttaagtttcttgaggtgtgacatgtgccattcttttcagttctcaagaaagaaaaaaaatgtgtgatcagttctcaccgttcactgtgctgtttcaatatccaggttgcatatccatatgtagcaaagcgtctcttgacagatccaaaccctgctctccgtgaacggctgatacaggtaaccagtcaaggcctccttaacactactgcaaagctattgtccattggtagtttctaccatatgatccaccattgtatatgtgaaagtgtggaataaagcatcagtgcagaaaataaacagcaagtttgttctgtcaaactacaggaaagaagcatgttttagcatttaaatggttgacaattgtgtgacatgccattatttatttttaaaaaagacttttaccacttatgtcgtcaccatgttttttttccctatgaaggtattattcaaagatggtctgttccaatggaaacggctagaaaaccttatagttcttgccaaggaaaacgtgtccaagatgagcagcaatcctgcactaaaaaagaatagctcgtgagtatcagaactgtctgttctataacgctctaaatcttatttctagaaatactctgatcttgtgaaccactaggcaaattgagagaaatcgacaaatggagaagaaattagatctcaccgacacaataaaagacggagcacgtttgttccttatcgacgctggcatcaggagacaacttattatggctttcacggaggactccaagttgcatgtagaagaggtactttaacatggattgttcactacagtattcacacaagttgtatactaaggaaagatggaagataatttttccagtggattactgtaacccatttctctcttttgcagcttgttgatgtgtacagactggtcgaagatcaaatcgacattccatcagttgctctcgaggttatccaaggtaagtcagtcgacctatgttagttggaaaaactctcctgttcttccatttgaaatgcatttactttacttttctgtgcagatttaccatccgtcgcgcgcgatttcatgctttcttggagcgattccatcctgtcagatcggcaatactgatctcaggttaacagtttagagcagcaagcagaagtgctgtcaagacctgcaggagccattcttccttcagttaacctacactaaaatagatagatatagatgactacatttttcctctttgctgtacacaatttggtttgctattcttttctatagtatatcattgtataggaaacttgccatctgcatttcatttatatattttcgatggctctgtatatgccgtttgtatagcggaagaaaaggaacttgtatatagaatgagcttgtattgtgggagaaagtagctatatgtgtacatcgaggaaacttacattataagatcagatcatatgttttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0216300, RefSeq:Os11g0216300