Os11g0247800

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Revision as of 09:06, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0247800| Description = Zinc finger, TTF-type domain containing protein| Version = NM_001074148.1 GI:115484944 GeneID:4350200| Length = 4331...")
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Gene Name

Os11g0247800

Description

Zinc finger, TTF-type domain containing protein

Version

NM_001074148.1 GI:115484944 GeneID:4350200

Length

4331 bp

Definition

Oryza sativa Japonica Group Os11g0247800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:7992031..7996361

Sequence Coding Region

7992031..7992101,7992197..7993662,7993752..7994776,7994988..7995497,7996106..7996129
,7996305..7996361

Expression

GEO Profiles:Os11g0247800

Genome Context

<gbrowseImage1> name=NC_008404:7992031..7996361 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:7992031..7996361 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcatatctgatcttagatgtggaccaaatgtttcagttatccggtaagaaagtgatttctgaccagattgtacccaagatcagtaaagttttagcgtctctcaggggtggacccaggcctggggcaacctgggccgcggaccaggtcgtgggccgtgtagtaatggaccccccacctagatatacctctgaaattttggcccaaggcccactaaatcaacctaaccctaactcccctcctcagttccttagaagcgagagacagagatgggagagcggcggcgtggcgcgacgccttcttgctcgaggctcgctcctacggtcctacccagcacgacagcacgccggcgccgccgcccgcctggcacgccgtctcctcggctcgctcggtcgctccctacctgcctctgccttgctgcctccttactcctcagcctcaactcctctcctcatccggctccctggcggacaggcggacagcaccagtgcgccatcactgggaccggcggtcggcaacgagccgacaacccccaagggccaagggccaaggcgcggctttgtgctcatgagcagagcagcaagtacggggacccaaatccctccacaaacagcgggaaccggaggtagtaatactcagcaagcagcagctgttgttgaggcagccataggagaaactggagctagagctagtaacattcaagttcaacatgcccctagtacttgtgaggcagcccctagtattgttgagacagtggggagtaatattccacaaccagaacaagaacctcacaattcagagacagttgagcttaatccggctgacatagttgctgatcctgggcttagaaaaccaattgagcaatttcatatagacattagagatgctgttagaagggaatacttgtcaagaggtccatgccaaccaattggtcataaatatccacagaagttaatgggaaatcgacaaagaagctttcatgactcgtggttcaaaatgcataattggttggagtatagtattgccaaagatgcagcattctgtttttattgttatcttttcaagcaaccaagacctgataattttggtgttgatgctttcacaagtaagggctttactaattggaaacatgcaactggatcttttaatgaacatgttggtaaagtagatagttttcataatagagctagaaaacattgtgaggatttcaaaaatcaaaggcaaagtgtatcatataagatggatagtggatctaagaagttagagcaacaatattatggtcgtataactatgatattgggtgttgtgagatttcttttattgcaagcacttgcttttcgtggtcatgatgaatctcatggatctagcaataaggggaactttctagagatgatagaatggtacaaggagaaggataaagatgcccaaaaattacttggaaattctcctgggaatcatctattgacttcaccaaaaatacaaaagcatttgtgcaaggcttgtgcaaataagacaactaaagccattctaaaggatattggtgagagaaatttcgccattcttgttgatgagtctcgagatgcatctattaaagagcaaatggctgttattttgaggtacatcaacagcaaagggcaggtgattgagagatttcttggggttgaacatgttcctgatacaacatcagttgcactgaaaatagctttggatgccatgattgttagtcatggtttatctatgcataaagtgagagggcaaggatatgatggcgcatcaaacatgagaggtgaatttcatgggctgcaaagacgggtattggatgaaaacccctatgccttttatattcattgttttgcccatcagttgcagctagtggttgtgtctgttgcaaaatgttgttctcctgtctcagatttctttaactatacccccatgattgttaacactgtcaatggttcttgtaagagacatgatcagctggcccaagaacaccatgataatcttgtgagtagtttagagactggggagatattttcaggaagagggaaaaaccaagcaactaaccttgcaagacctggggatactcggtggggttcacatcacaaaaccttgtgtcgtttgcagcacatgtggaaagcagtcctagaggtattagaaaatatatgtgaggataaccccactacaaaaataactgctacaggtttgctaaaacagatggagagctttgaatttgtgcttatcatgcacctaatgattagactattgggtaaaactaatgatctgtcacaatgcttgcaaaagaaagaccaaaatattattcgtgctataggattgattgggaccacattgcaaaaaattaaccacataaggcagcatggttggcaagaactctttgaagagacaaagacattttgtctcaagtataacatcattgtgccagatatgtcagatacaactactactaggggtcgttcaaggggtcgtggaggtcaattgataacttaccaacatcatttcaataatgaaatctttaatgtggtacatgaccagcttattgtggagttaaacaatcggtttgctgagagatctacccagttattgagatgcattgcttgtcttgatcctaggaattcttttgccaattttgatgaagataagttaattgagcttgctagaatgtatgctgccgacttctctccatatgattgcatagtcctaaaggaccaacttgagacatttatagctgatgtgagagcagacccacatttcctaagttgcagtgaccttggtaatcttgcaatgaagatggttcagagtgatagacatacagtttttcctttggtttatcggctcattgaattggctttgattttgccggtggcaacagcaacagttgaaagggctttttcagctatgaatatcatcaaaactgagttgcggaataaaatggctgatgaatggctcaatcatcgcgtggtctgctatattgagagagacatatttgcaagcattgataatgataagatattaactcattttcaagaattgagaaccagaaagatgaagctacctctccctagtggatcaagatctggagctacaattgaagaattcaatgaggatgatatagactccgaggaagataacacgtag</cdnaseq>

Protein Sequence

<aaseq>MAYLILDVDQMFQLSGKKVISDQIVPKISKVLASLRGGPRPGAT WAADQVVGRVVMDPPPRYTSEILAQGPLNQPNPNSPPQFLRSERQRWESGGVARRLLA RGSLLRSYPARQHAGAAARLARRLLGSLGRSLPASALLPPYSSASTPLLIRLPGGQAD STSAPSLGPAVGNEPTTPKGQGPRRGFVLMSRAASTGTQIPPQTAGTGGSNTQQAAAV VEAAIGETGARASNIQVQHAPSTCEAAPSIVETVGSNIPQPEQEPHNSETVELNPADI VADPGLRKPIEQFHIDIRDAVRREYLSRGPCQPIGHKYPQKLMGNRQRSFHDSWFKMH NWLEYSIAKDAAFCFYCYLFKQPRPDNFGVDAFTSKGFTNWKHATGSFNEHVGKVDSF HNRARKHCEDFKNQRQSVSYKMDSGSKKLEQQYYGRITMILGVVRFLLLQALAFRGHD ESHGSSNKGNFLEMIEWYKEKDKDAQKLLGNSPGNHLLTSPKIQKHLCKACANKTTKA ILKDIGERNFAILVDESRDASIKEQMAVILRYINSKGQVIERFLGVEHVPDTTSVALK IALDAMIVSHGLSMHKVRGQGYDGASNMRGEFHGLQRRVLDENPYAFYIHCFAHQLQL VVVSVAKCCSPVSDFFNYTPMIVNTVNGSCKRHDQLAQEHHDNLVSSLETGEIFSGRG KNQATNLARPGDTRWGSHHKTLCRLQHMWKAVLEVLENICEDNPTTKITATGLLKQME SFEFVLIMHLMIRLLGKTNDLSQCLQKKDQNIIRAIGLIGTTLQKINHIRQHGWQELF EETKTFCLKYNIIVPDMSDTTTTRGRSRGRGGQLITYQHHFNNEIFNVVHDQLIVELN NRFAERSTQLLRCIACLDPRNSFANFDEDKLIELARMYAADFSPYDCIVLKDQLETFI ADVRADPHFLSCSDLGNLAMKMVQSDRHTVFPLVYRLIELALILPVATATVERAFSAM NIIKTELRNKMADEWLNHRVVCYIERDIFASIDNDKILTHFQELRTRKMKLPLPSGSR SGATIEEFNEDDIDSEEDNT</aaseq>

Gene Sequence

<dnaseqindica>4261..4331#2700..4165#1586..2610#865..1374#233..256#1..57#atggcatatctgatcttagatgtggaccaaatgtttcagttatccggtaagaaagtggtaagaagaacaatatttttggttgatgatatgatgcgatttgctggtacgttcttatgggtggtatttgctgcttttagcacaattttatacttctgcatacacaattgtttttctcctaatatctgaaggtatttatttaatttaagtgggcaaatgtctttatagtatgcagatttctgaccagattgtacccaaggtatgatagagatctaacattcttatattcatgtccttgagacaaattgttgcaacgagtgaatcattttctgctctatggaaatttgctcaaatccttcttaattgtctctctgctgtgcatatatagctcatgttactgccttgcttccaagatattgggttcaaatgtaagataacactaataggtatctgttgttccaaccataatctcgatctgtttaactaatgcagactctgtttgcttttataatgctcattttatacatcatatgtttacggaccattaattaggttcacataagtatgtgtctcactagacgctaccttccattgaaatattatttgttcatatcttatctgacatttccatcttataccattttcctttagtttgtcacattttaaacttgctgctgtaagtttgctaactaaccatgtgaaacaggtcaacattccttagtctcaatacttcaatagtgcaggttgcaattcactacctgaaatgctcatttcagctcaaagttttctaggctatcgtctgctacataaaatccaactgatatgtgagagtcctgctcctttaggtgtgtcacgttctgaattcagatcagtaaagttttagcgtctctcaggggtggacccaggcctggggcaacctgggccgcggaccaggtcgtgggccgtgtagtaatggaccccccacctagatatacctctgaaattttggcccaaggcccactaaatcaacctaaccctaactcccctcctcagttccttagaagcgagagacagagatgggagagcggcggcgtggcgcgacgccttcttgctcgaggctcgctcctacggtcctacccagcacgacagcacgccggcgccgccgcccgcctggcacgccgtctcctcggctcgctcggtcgctccctacctgcctctgccttgctgcctccttactcctcagcctcaactcctctcctcatccggctccctggcggacaggcggacagcaccagtgcgccatcactgggaccggcggtcggcaacgagccgacaacccccaagggccaagggccaaggcgcggctttgtgctcatgagcagagcagcaagtacgggggtaagttttccatctctattttcttctgttaatttgttctttacttcttttctcaaatgcctaagtggctaagtgcctaaaatactgcagtgtctatagatctattgattccaatcaatttatttaacttgcaatagagatcagaagatgaagaggcctaggactacattgaaatctttttatgccccagcaacaccccaatccaattcagacccaaatccctccacaaacagcgggaaccggaggtagtaatactcagcaagcagcagctgttgttgaggcagccataggagaaactggagctagagctagtaacattcaagttcaacatgcccctagtacttgtgaggcagcccctagtattgttgagacagtggggagtaatattccacaaccagaacaagaacctcacaattcagagacagttgagcttaatccggctgacatagttgctgatcctgggcttagaaaaccaattgagcaatttcatatagacattagagatgctgttagaagggaatacttgtcaagaggtccatgccaaccaattggtcataaatatccacagaagttaatgggaaatcgacaaagaagctttcatgactcgtggttcaaaatgcataattggttggagtatagtattgccaaagatgcagcattctgtttttattgttatcttttcaagcaaccaagacctgataattttggtgttgatgctttcacaagtaagggctttactaattggaaacatgcaactggatcttttaatgaacatgttggtaaagtagatagttttcataatagagctagaaaacattgtgaggatttcaaaaatcaaaggcaaagtgtatcatataagatggatagtggatctaagaagttagagcaacaatattatggtcgtataactatgatattgggtgttgtgagatttcttttattgcaagcacttgcttttcgtggtcatgatgaatctcatggatctagcaataaggggaactttctagagatgatagaatggtacaaggagaaggataaagatgcccaaaaattacttggaaattctcctgggaatcatctattgacttcaccaaaaatacaaaagcatttgtgcaaggcttgtgcaaataagacaactaaagccattctaaaggatattggtgagagaaatttcgccattcttgttgatgagtctcgagatgcatctattaaagagcaaatggctgttattttgaggttagttgctgtcttttgcattttccttgttcttatattttgaaactgaccatattaacaatggtattattctatgttatgtcacataggtacatcaacagcaaagggcaggtgattgagagatttcttggggttgaacatgttcctgatacaacatcagttgcactgaaaatagctttggatgccatgattgttagtcatggtttatctatgcataaagtgagagggcaaggatatgatggcgcatcaaacatgagaggtgaatttcatgggctgcaaagacgggtattggatgaaaacccctatgccttttatattcattgttttgcccatcagttgcagctagtggttgtgtctgttgcaaaatgttgttctcctgtctcagatttctttaactatacccccatgattgttaacactgtcaatggttcttgtaagagacatgatcagctggcccaagaacaccatgataatcttgtgagtagtttagagactggggagatattttcaggaagagggaaaaaccaagcaactaaccttgcaagacctggggatactcggtggggttcacatcacaaaaccttgtgtcgtttgcagcacatgtggaaagcagtcctagaggtattagaaaatatatgtgaggataaccccactacaaaaataactgctacaggtttgctaaaacagatggagagctttgaatttgtgcttatcatgcacctaatgattagactattgggtaaaactaatgatctgtcacaatgcttgcaaaagaaagaccaaaatattattcgtgctataggattgattgggaccacattgcaaaaaattaaccacataaggcagcatggttggcaagaactctttgaagagacaaagacattttgtctcaagtataacatcattgtgccagatatgtcagatacaactactactaggggtcgttcaaggggtcgtggaggtcaattgataacttaccaacatcatttcaataatgaaatctttaatgtggtacatgaccagcttattgtggagttaaacaatcggtttgctgagagatctacccagttattgagatgcattgcttgtcttgatcctaggaattcttttgccaattttgatgaagataagttaattgagcttgctagaatgtatgctgccgacttctctccatatgattgcatagtcctaaaggaccaacttgagacatttatagctgatgtgagagcagacccacatttcctaagttgcagtgaccttggtaatcttgcaatgaagatggttcagagtgatagacatacagtttttcctttggtttatcggctcattgaattggctttgattttgccggtggcaacagcaacagttgaaagggctttttcagctatgaatatcatcaaaactgagttgcggaataaaatggctgatgaatggctcaatcatcgcgtggtctgctatattgagagagacatatttgcaagcattgataatgataagatattaactcattttcaagaattgagaaccagaaagatgaagctacctctccctagtggtatgtcttattcttgttctgaaatttgtgtactgttaactttgattctcattttctcaatccatggatgtaatatgtgattctttttccaataggatcaagatctggagctacaattgaagaattcaatgaggatgatatagactccgaggaagataacacgtag</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0247800, RefSeq:Os11g0247800