Os11g0439600

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Revision as of 09:09, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0439600| Description = Similar to Nod factor binding lectin-nucleotide phosphohydrolase| Version = NM_001074345.1 GI:115485338 GeneID:435042...")
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Gene Name

Os11g0439600

Description

Similar to Nod factor binding lectin-nucleotide phosphohydrolase

Version

NM_001074345.1 GI:115485338 GeneID:4350420

Length

7718 bp

Definition

Oryza sativa Japonica Group Os11g0439600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:16214068..16221785

Sequence Coding Region

16214222..16214352,16215820..16216218,16216543..16216634,16216894..16217099,16217212..16217304
,16217432..16217488,16217581..16217709,16221357..16221677

Expression

GEO Profiles:Os11g0439600

Genome Context

<gbrowseImage1> name=NC_008404:16214068..16221785 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:16214068..16221785 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcacgctccgccgtgttgttgcacgccgtcctcctcgtcctcgccgtcgcggtgtcgtcgtggcgtggcgtggtctccggcgacgcggcggtggtgctcggccggaaggccgccgggatgagtagtgctgcagcgtcgtcgtcggccgacgacgacctgccggcgctgcagatctcggcgaggaaggacggcgccgggaacgataagtacgccgtgatcttcgacgccggcagcaccgggagccgggttcacgtcttcaggttcgacaagcagatggacctcgtcaagatcggcgacgacatggagctcttcgccaaggtgaagcccgggttgagctcatatgctggcaaaccacaggaagctgcaaactccattgctcctctgctagagaaggctaaaggtgttgttcccaagcagcttcagaaaagaactcccctcaaacttggggccactgctggtctaagactgattggagatgagaagtcagagcaaattcttgaagcggttcgagatcttgtccacagcaagagcaatttccagtacaaaccagaatggatcagtgtccttgggggttctcaagaaggatccaacctctgggttgctctgaactatcttttggggaagttaggaggggattactcaaaaaccgtaggagtgatcgatctcggaggtggttcagttcaaatggcctatgccatttcttcagatgctgcagaaaactctcctccagtccctgtcggcaaagatccttatgttacaaaggagtatctcaagggaaaagattataacctttatgttcacagttacttgcattatgggctccaagcttctcgcgtcgagattcttaagacgaagaatgggcaattcagctcctgcatgcttcgcgaattcaatggtacatacaagtacaacggcgaggagtacgacgcggcggcgtcgccggaaggggcggaccacggcaagtgcggcgaggaggcggcggcggcgctgggcctggacgcgccgtgcgagtcccggaactgcagcttcaacggcgtgtggaacggcggcggcggcgccggcatggccgacctctacgtggcgtcctacttctacgacagggcggtgcacggcgggttcgtcgtcgacgacgcgccgagcgccgtgaccaccccggcggcgttcgcggaggcggcgtcgaaggcctgctcgctgagctccggcgaggccgcggccgcgtacccggaggcgttcgacgtgcagttcatatgcatggacctgacgtaccagtacacattgcttacaaagggcttcggtttgaagccaactagggagatgacgcttgtgaaacaggtcaagtatggggattgctacgtggagtcggcgtggccgctgggtactgccatagaagccttgtcctcccagaagagtcatcagtctgcatga</cdnaseq>

Protein Sequence

<aaseq>MARSAVLLHAVLLVLAVAVSSWRGVVSGDAAVVLGRKAAGMSSA AASSSADDDLPALQISARKDGAGNDKYAVIFDAGSTGSRVHVFRFDKQMDLVKIGDDM ELFAKVKPGLSSYAGKPQEAANSIAPLLEKAKGVVPKQLQKRTPLKLGATAGLRLIGD EKSEQILEAVRDLVHSKSNFQYKPEWISVLGGSQEGSNLWVALNYLLGKLGGDYSKTV GVIDLGGGSVQMAYAISSDAAENSPPVPVGKDPYVTKEYLKGKDYNLYVHSYLHYGLQ ASRVEILKTKNGQFSSCMLREFNGTYKYNGEEYDAAASPEGADHGKCGEEAAAALGLD APCESRNCSFNGVWNGGGGAGMADLYVASYFYDRAVHGGFVVDDAPSAVTTPAAFAEA ASKACSLSSGEAAAAYPEAFDVQFICMDLTYQYTLLTKGFGLKPTREMTLVKQVKYGD CYVESAWPLGTAIEALSSQKSHQSA</aaseq>

Gene Sequence

<dnaseqindica>7434..7564#5568..5966#5152..5243#4687..4892#4482..4574#4298..4354#4077..4205#109..429#acccaccagcaactccctgactccatcggagtatattagctcgtagctgagtgcggctcagtctgccagctcgatcggaggcgctttcatcgatcggcggcggcagcgatggcacgctccgccgtgttgttgcacgccgtcctcctcgtcctcgccgtcgcggtgtcgtcgtggcgtggcgtggtctccggcgacgcggcggtggtgctcggccggaaggccgccgggatgagtagtgctgcagcgtcgtcgtcggccgacgacgacctgccggcgctgcagatctcggcgaggaaggacggcgccgggaacgataagtacgccgtgatcttcgacgccggcagcaccgggagccgggttcacgtcttcaggttcgacaagcagatggacctcgtcaagatcggcgacgacatggagctcttcgccaaggtatgaattgacaacacatgtgctcccttcgtctctaaatagttgacgttgttgattttttttaataaccgttcgtcctattaaaaaaatttaagtaattactaattatttttctatcatttgattcatggttaaatatacttttatatatatatatatatatatatatatatatatatatatatatatatatttatatatttcacaaagttcttgaataagataaatgatcaaatatgtttaaaaaaggtcaacagtataatatttagggacggagggagtattacgtggcgagagtaaactgttcatgtaaaaatcggtaaaaagaaaaagatatataaacttaatttgcatgctcaataactagacatttaggcagagctcacatttttcattggagagatagaatggagttcatcacgaagttcaagagcaaggaaaaaaaatcaatgttctgtatagcgtaacatgagttgattattaaaattgcatgcatgtcgcgtataacttcctcgcctattgtcatgaggaactcataattaatttagtttcaaacttttcacagtttttacagaggtggatccgatgcaacaaattttggtagaaatttcaattcgataaagttgagtagttggcaattttaagttgaaacatcatggctcagtgagtagatgaggagtatcgataacgtcaacattcacgtgtttcggtctggagacgatagcttggaccacgcctgcaacaaacgtgacaccccatgttttattgtggaattagtggatgggtatatgtgaaaattgtacaaatgatgaatgttgaaatgttatgaaaataatgtggggagaagatgtgtcttgcttgtgtgaaatttaagatgttaattgctagtggatgatgagatgacatactagtgggtatcaactatacaaagtatagatacatacaatcagggtttacgattctgacaaaatctagtccgatttcgtgaaatttcgacgtttcgatgaggctcgaaagtataaaccgtttgagatttcgaggagtttcatccaaattcaatttgaattgataaaaaaagaaaaaaatcaaaaaaatcttataaatactatgatattcatataaccaattgggatataaatttttgaaaaaaatgatgtattgtgtgtatttattgaaacttacatcaagaaagaaaagaataaataattaaaaaaagagacaaattaccgatcgaaatttcgatgatttcgatcagaatttcgctaaaaccgaccggttttcaagaacttgtcgacaaacttagggatttgtattcaaattttggtttatgaaatttgttcggaatttaccggttttttaccggatttcacgaaattctgactttcgccggtgcccgaaacagaagagcctgtcggaatcgtaaacccaacatacaatgatattttttattgttttggcggtggaaactagctctccacacagtttctccagccggttgcaaaatacaatctgttattttcattctttgctaattaaatataagttgtttcagatatccgcataatttttaaaatttccttactagttggtttttaactactaaatactacctttgtttatacaaacggtttttccctagtaaaacaatttagaggaagttgcaaaaaaacatttttatttatttgtttatcatttcgcacaaggctgaaacgacttattttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgttaaatggaggaagtagcttttttctaaaaaaaatggatcaatatgatttttttagcaactttcgtatagaaactttttgcaaaaaaaaagcaccgtttagtagtttgaaaagcgtacgcgtgaaaaacgatggtggggagttgggaactcctaacaaagaacgcagccttaatactataaccatccataacttttaaagtacttagtttcaaatcgtatgtccatacactggtggagaaggggtttttactcccggttcgtaacccccatgtagtcccggttttccaaccgggactacgaatacgggactaaagatcgctatctttagtcccgggtgaaaaaaccgggagtaaaaatccatttttagtcccggttggtgttaccaactgagactaaagatacaaccgggactaaaaagactagatccggttgctctttattattttcttttcttcattgtttttaatatatattgatttcaccccatcccgtccccaaaatcccaaatcaatcattctcaaattgcctccaaatccacaatcgatcatctcaaatactcaaatacatcacaaaatctcaaaaaaaaaattacatcaagcacaacaaaatacatccacaatacatccacatccacaatccacaaatcaatcacaatccacaaattaatcacaaaatcatccctaaatcaaccaacaaaatgctccaccaaaatatacaaatcattcaaaaaaattcacagtcgccgccgcccggccgtgggccgccggccgccttgcgcccgaccaccgcgcgggtcaccgccgcccggccgccacccaccgccttgcgcccggccaccaccgcctgccgccttgtggccagccctccgcgctggcctccgccgccgccactggggacggccctctgtgcgcgacggccgcctcccctcccggatccgacggaggggaggccgccgccgccacctggccgcctgccctcccggatctgacggaggggaggccgccgccgccgcccggccgcctcccgccgccggagaggagccggaggggaggggaggggggagagaatgagggggaggagagggttgagaggagaggaggaggagaaggagaagtgagaaagaggaggagaagtgggaaggagaagggataagatagggcggggaggacgaggtgctgctggccggtggcgcatggggatctttactcccggttggtgttaccaaccgggactaaaaatacatctttagtcccagttggtaactccaaccgggagtaaagcttatgttgatcttttttcccggttggtaacaccaaccgggactacaaatagatctttagtatcggttggtaacaccaaccggtactaaagatgaaaaagtacccttgatcttttaaaccgggattaaagatgtttttagtcccggtttttaatacaaccgggactattgtgaaatctggtcgaccgaccaaagatggtttctccaccagtgatatttttcttgaaaaataattttataatctcttaaacttattagatttcataaataaatttttactataaaattctagtcaaattctcacttggaagaccacaaaaaatagttgaatttcaaatgctcttgccagcaagaaaacgcgacgttgtattccatatacttggagtatgcttcaagattatcgcttctcctttttaaagtgtgaagcgtgcgtatagcatgcttcaagatttctgcagcatctttttgaagtgtaaagcaataaagcatacgtgcatggaacagttatgaggatagtttgtggattctatgaaaaaagttgtaacttcatataggctcacattcgaaaaaaaaatataggtgaagcccgggttgagctcatatgctggcaaaccacaggaagctgcaaactccattgctcctctgctagagaaggctaaaggtgttgttcccaagcagcttcagaaaagaactcccctcaaacttggggtacttactgatcttactgaaactggaattaattattcttgaaatgatcttaagaactattttatgtttggtgtaatcaaattggtgttcaggccactgctggtctaagactgattggagatgagaagtcagagcaaattcttgaagcggtaaataatattctcaccgtaatctggtttcattagatgatgtactctacttttgcaaagatcttaaccgtttgtagactatatattgatcacaaaaatgacatgttttcaataatattacttacaggttcgagatcttgtccacagcaagagcaatttccagtacaaaccagaatggatcagtgtccttgggggttctcaagaaggatccaacctctgggtatgaaatgtttgacatactgtcattcagagcagaaattttctgacaatttacatctttatataaatatatcatttcggaaaataaaaattccatatggtacatggtgcaggttgctctgaactatcttttggggaagttaggaggggattactcaaaaaccgtaggagtgatcgatctcggaggtggttcagttcaaatggcctatgccatttcttcagatgctgcagaaaactctcctccagtccctgtcggcaaagatccttatgttacaaaggagtatctcaagggaaaagattataacctttatgttcacaggtagaatcgacaacaacttcttaccaaattatatcttacttcttcagctccatgcaatttttgttaacttaattttggtctgtattgacaacaaaaggctgtggacctgtggttaattaaaagaaagcttaaaacagactaactcgggcttgattaatttctgaacatcattcagagttagttgtgtaacacaaggaaataagtagtaattatttactttaggcaatggtgatgatcagacataatcttgaatgaacagttacttgcattatgggctccaagcttctcgcgtcgagattcttaagacgaagaatgggcaattcagctcctgcatgcttcgcgaattcaatggtatgtcccagaaaaaatactttaatttttagatttaaatgtgtcacattaataccgaatacgtctatatgtataggctggtggaatgattttcatggattttcgacataaataattgaggaattttagaaccccgcatgaaactatttagccagaaaatttcaaaacaaaatcattttttttctaatttagtcaacgtttattcaaataggggcaaattaaatttcctcttttttgcacggtcgcccgttaagaaatgttcaaaacgaaactgcaaacgaaaataatttgacgatttattcttggtcgatgacctcgacgaaggtacatacaagtacaacggcgaggagtacgacgcggcggcgtcgccggaaggggcggaccacggcaagtgcggcgaggaggcggcggcggcgctgggcctggacgcgccgtgcgagtcccggaactgcagcttcaacggcgtgtggaacggcggcggcggcgccggcatggccgacctctacgtggcgtcctacttctacgacagggcggtgcacggcgggttcgtcgtcgacgacgcgccgagcgccgtgaccaccccggcggcgttcgcggaggcggcgtcgaaggcctgctcgctgagctccggcgaggccgcggccgcgtacccggaggcgttcgacgtgcagttcatatgcatggacctgacgtaccagtacacattgcttacaaagggcttcggtaagtaattgcaaaaatatttcgtccattccaaaatataatacatccatcctataataaaataagtgcagtcgtggatatgtgtgtacaactttgatcatctgtcttatttaaaaaaattataattttttttaaaaaaaattagtcacacataaattactattaatgttttatcatttaatagcaataaaaatactaatcataaaaatgtttcaaataagacgaacggttaaacgttaaacacaaacaatgtaaaactgcacttagaccctgtttagttctcacgcaaaaacttttcatcctgtcacaacgaatgtttggacacatgcatgcagtattaaatatagaaaaaaaattaattacgcagactgcgtgtaaattgcgagacgaatcttttaagactaattgcgccatgatttgacaatgtggtgctacagtaaatatttgctaatgacggattaattaggctaaataaattcgtctcgcagtttacaggcggaattcgtaatttgttttgttattagactacgtttaatactttaaatgtgtgtctgtatattcgatgtggcaagccaacactttttacccctcgaactaaataaggctattttgggacgaaggtagtagaatataagtgttttttgcaaatattaatgttagggaaaaaagatttcctttcaatcatcttaagtgtttaaattctccttaaggaccgtgattaggtgaaaatgtatgttctgtgcgttggaatcagtggaacaatacttatattgtaaaaaaacttatttctatctaagcagttggatattatataattttacagtttttattgagagattataggatggtagtataaatagaaatgatttattggatagaaaaattataaacagttgattctacttacgattgtaaagcatctctttaaatctttttaactcagattaaattaatattttaatttgcggacagtgtggtatcttttcgggaaccataaaaatagttgtatttagagctaatctaattttattacacaaacgaatgtatgcactatgcacccacaccatatattaatctgagttaaaaacaattaaagagatgttttacaatcgtaagtagaatcaactgtttataattttctcatccaataaatcatctgtgtagtaggagtgacatattaggactcgataaacaaacaatataaactatatatattattgtatagtgcctcctaatgcctcattattgaacatgtaaaacatcatataaataattatttattagaacttgcggcaaatctttaagtaacttgtttccatttcaatattagttcactttgaaaaattaatatactctttacaaaattggcgtactaaagaacaaccgaattaaattcgtccacactgaagttactagcaagtagcagcaacaacacctgacatagaaattggaattatggtttcgcaggtttgaagccaactagggagatgacgcttgtgaaacaggtcaagtatggggattgctacgtggagtcggcgtggccgctgggtactgccatagaagccttgtcctcccagaagagtcatcagtctgcatgatccatttagctatatcacgcaaggatgcctacatatatgtatgtgttctgattcacgtacgtttgagcggtggagaagatgtttggcagatttgagtagcaaattcataacactgcgcaattaataacttaataaaatggtattgtttgacggc</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0439600, RefSeq:Os11g0439600