Os11g0539200

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Revision as of 09:12, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0539200| Description = Similar to Xyloglucan endotransglycosylase XET2 (Fragment)| Version = NM_001074565.1 GI:115485778 GeneID:4350662| Le...")
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Gene Name

Os11g0539200

Description

Similar to Xyloglucan endotransglycosylase XET2 (Fragment)

Version

NM_001074565.1 GI:115485778 GeneID:4350662

Length

2882 bp

Definition

Oryza sativa Japonica Group Os11g0539200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:21502813..21505694

Sequence Coding Region

21502837..21503130,21503226..21503419,21505154..21505553

Expression

GEO Profiles:Os11g0539200

Genome Context

<gbrowseImage1> name=NC_008404:21502813..21505694 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:21502813..21505694 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgacgacgacggcggcggcgatggtggtggcaatgtcggtgctgctgctgggtggcggcgaggcggcggcgccgcggaagccggtggacgtggcgttcgagaagaactacgtgccgacgtgggcggaggaccacatccactacgtggacggcgggcgcgaggtgcagctctacctcgacaagtccaccggcaccggcttccagacccggggctcctacctcttcggccacttcagcatgcacatcaagctcgtcgccggcgactccgccggcaccgtcaccgccttctacctgtcgtcgcagaactcggagcacgacgagatcgacttcgagttcctggggaacaggacgggggagccgtacatcctgcagacgaacgtcttctccggcgggaagggggaccgggagcagaggatctacctctggttcgaccccaccaaggactaccactcctactccgtcctctggaacctctacatgatcgcgttcttcgtggacgacacgccgatcagggtgttcaagaacagcaaggacctgggcgtgcggtacccgttcaaccagccgatgaagctctactccagcctgtggaacgccgacgactgggccacccgcggcgggcgggagaagaccgactggtcgcgggcgccgttcgtcgcctcctaccggggcttccacgtcgatggctgcgaggcgtcggcggaggcccggtactgcgccacccagggcgcccggtggtgggaccagccggagttccgcgacctcgacgccgaccagtaccgccgcctcgcctgggtccgcaagacgcacaccatctacaactactgcgacgaccgcgaacgctaccccgccatgtcgcccgagtgccaccgcgaccgcgacgcctga</cdnaseq>

Protein Sequence

<aaseq>MATTTAAAMVVAMSVLLLGGGEAAAPRKPVDVAFEKNYVPTWAE DHIHYVDGGREVQLYLDKSTGTGFQTRGSYLFGHFSMHIKLVAGDSAGTVTAFYLSSQ NSEHDEIDFEFLGNRTGEPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLY MIAFFVDDTPIRVFKNSKDLGVRYPFNQPMKLYSSLWNADDWATRGGREKTDWSRAPF VASYRGFHVDGCEASAEARYCATQGARWWDQPEFRDLDADQYRRLAWVRKTHTIYNYC DDRERYPAMSPECHRDRDA</aaseq>

Gene Sequence

<dnaseqindica>25..318#414..607#2342..2741#acacaaccaccactcaccaccaacatggcgacgacgacggcggcggcgatggtggtggcaatgtcggtgctgctgctgggtggcggcgaggcggcggcgccgcggaagccggtggacgtggcgttcgagaagaactacgtgccgacgtgggcggaggaccacatccactacgtggacggcgggcgcgaggtgcagctctacctcgacaagtccaccggcaccggcttccagacccggggctcctacctcttcggccacttcagcatgcacatcaagctcgtcgccggcgactccgccggcaccgtcaccgccttctacgtacgccgccgccattgctccctgatcctcttccccttctgcttcttgatcggagatcgatgatgtgtggtttttttgcattggggaatttgcagctgtcgtcgcagaactcggagcacgacgagatcgacttcgagttcctggggaacaggacgggggagccgtacatcctgcagacgaacgtcttctccggcgggaagggggaccgggagcagaggatctacctctggttcgaccccaccaaggactaccactcctactccgtcctctggaacctctacatgatcgcgtacgctaattacccctcattaacacccccacttatttacttgcattgtactccctcattttccgaagaaaataaaaataaggaagcacaatctacaactatcaactctggtaaactttgagattcgtagtattaaaatattttataatatctttataatgtcgttaattttttatctaacgtttgatcattcgtcttataaaaaaattatgtaattatcatttattttattgtgattttaagtatgacataaatattttcatatttgcataaaaaatttgaataaaatgaatagtcaaacgttataaaaaatgtattatatattaaaatacagacagtatattttaagacaaatagagttgtagaattatgctgtgtttagattggcccaaagtttaaaatttgattgaaattggagacgatgtgactaaaaggttgtgtgttgtatgaaaggttcgatgtgatggaaagttggaagtttgaaaaaaaactttgaaactagtatatgagtatattatagcccgggagagtattacattagcagaatgattttctctttttttttcctcaaaatgtagccaggtaggatgggtctaatcctgccttagactgggatgaaagtagtaagagtaattagtgcggtgtcagtagtactaagatgctttgaatccaccgtaaagatgagcaaagcaaaaggtacctgcacggtgagacgagagattggcgcgcatgtgcaattgattttggcgcgcgtgtacatgtcgtccctgaccagcagagttcagaaagaacatgaaaagcagggatgggtcggtcggcggtggggcccacacgctgacacgcgccgatgctacagcgttgcacagtgcgaacaagaagcggatagccgctgtgcgctaacagtttattgaaagcaaaccgcaataaattaaaagctagtagtagtagtattaactgaaattactactcctactactacttgatgaaaatactatgtatttcctgtgttccagtaaaatcctatgatagccctattatatttctaaatttcagattttccagtgcaagtttttatttctatataatttttttttcttgtaatacatttctgcaacatttccttaattttttttatagtagttaactcatttatttatacacataagttttgttatagaaaattatagattacccatttatgaaccaattttagctgtctcagtcgggtctagaatctacataaaaatccagtaaaattcatacgttctaaatgtatatatatacatgtgcaggttaattatttcccatcaatttatacacacaaaatgttatgaaaaaatgtacagctatctcaaacagatctaaaatctacctcatccgtttcatattataagttgtttaaaagtcaaactactttaaatttgatcaagtttgtaaacaaatatagtaatatttacagtagcaaattaattttattaagtctacaatttaaatacatcttcataatatatttgtgttgggttgaaaatgttactattttttttctacaaacttgattaaacttagaacattttaacttccatcgaagtcaaaacgacgatgaaacgagagcagtttgattttaataaaaatcaaagcaacttgtaatctgaaacggagggagcacatgaaaatcctgtaaacttcatacgtacgttctgaaatctgaatgtatcgatctatcaatatatgcaggttcttcgtggacgacacgccgatcagggtgttcaagaacagcaaggacctgggcgtgcggtacccgttcaaccagccgatgaagctctactccagcctgtggaacgccgacgactgggccacccgcggcgggcgggagaagaccgactggtcgcgggcgccgttcgtcgcctcctaccggggcttccacgtcgatggctgcgaggcgtcggcggaggcccggtactgcgccacccagggcgcccggtggtgggaccagccggagttccgcgacctcgacgccgaccagtaccgccgcctcgcctgggtccgcaagacgcacaccatctacaactactgcgacgaccgcgaacgctaccccgccatgtcgcccgagtgccaccgcgaccgcgacgcctgagatctcatcgagatctgtgatcgatgcttgctggccgtccgatggatggatggatggatggggatgagtacgtgtacggctacgattaatcatgatttgagtgcgtgcagttaattaattaatgggtaacgttttgggggt</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0539200, RefSeq:Os11g0539200