Os11g0539500

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Revision as of 09:12, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0539500| Description = Winged helix repressor DNA-binding domain containing protein| Version = NM_001074566.1 GI:115485780 GeneID:4350663| ...")
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Gene Name

Os11g0539500

Description

Winged helix repressor DNA-binding domain containing protein

Version

NM_001074566.1 GI:115485780 GeneID:4350663

Length

1566 bp

Definition

Oryza sativa Japonica Group Os11g0539500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:21522603..21524168

Sequence Coding Region

21522603..21522908,21523347..21524168

Expression

GEO Profiles:Os11g0539500

Genome Context

<gbrowseImage1> name=NC_008404:21522603..21524168 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:21522603..21524168 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgttaatccatggaagcgaagaagtgatctcccatgaggaggacatggtcggagccttcgcgctgctctaccaccacgtgttcagctacatcaagcccatggcgctcaagtgcgccgtggagctcggcatccccgacgcgatccaccgccgcggcggcgccgccaccctggccaacatcgccgccgataccggcgtgcacgcgtccagactcaccgacctccggtgcctcatgaagctgctcaccacctcgggcatgttcgccgccaccgccgccacgaccgacggcggcgagggcgagcccgccgtcgcgacgtcgaccatgtacacgctcaccgcagcgtccggcctcgtcgtcggcccgcgcgggctgtccaccgtggtgcgcttcgcggcgggccccgtcgccgtctccccgttcttcgacatgcacgcatggctgcgcgccgcgccggcggcggcgccgcccgcggcgaggtcgctgttcgagctggcgcacgggcggtccaggtgggacgcggcgaacgcggacaacgacaccatgaacgcgcacagcttcgtggagagccagctgctgatcgaggccgtcctcagggaccacgccggcgtgttccgcgggctgcgctcgctggtcgacgtcggcggcggccacggcgcggtcgccaaggccatcgccgcggccttcccggacatcaagtgcaccgtgatggacctcccccacgtcgtcgccgacgcccccgtctccgacgacggcaacctgcatctcgtcgccggcgacatgttccaatccattccaccagcggacgctgttctactcaaatacgtgttgcactgctggggagacgacgactgcgtgaggattctccggaactgcagggaggcgatcccggcgagggaggccggagggaaggtgatcataacggagctggtgctgggctcgtcggcggcgtcgcgcgacgccaacgtggcggaggcggaggacatgcacagcctcttcctcatgtgcatcagtggcgtcgggcgggaggagcgcgagtggagggccatcttctccgacgccggcttcggcgactacaagatcacgccggtgttgggccctatctccgttatcgaggtctacccgtga</cdnaseq>

Protein Sequence

<aaseq>MALIHGSEEVISHEEDMVGAFALLYHHVFSYIKPMALKCAVELG IPDAIHRRGGAATLANIAADTGVHASRLTDLRCLMKLLTTSGMFAATAATTDGGEGEP AVATSTMYTLTAASGLVVGPRGLSTVVRFAAGPVAVSPFFDMHAWLRAAPAAAPPAAR SLFELAHGRSRWDAANADNDTMNAHSFVESQLLIEAVLRDHAGVFRGLRSLVDVGGGH GAVAKAIAAAFPDIKCTVMDLPHVVADAPVSDDGNLHLVAGDMFQSIPPADAVLLKYV LHCWGDDDCVRILRNCREAIPAREAGGKVIITELVLGSSAASRDANVAEAEDMHSLFL MCISGVGREEREWRAIFSDAGFGDYKITPVLGPISVIEVYP</aaseq>

Gene Sequence

<dnaseqindica>1261..1566#1..822#atggcgttaatccatggaagcgaagaagtgatctcccatgaggaggacatggtcggagccttcgcgctgctctaccaccacgtgttcagctacatcaagcccatggcgctcaagtgcgccgtggagctcggcatccccgacgcgatccaccgccgcggcggcgccgccaccctggccaacatcgccgccgataccggcgtgcacgcgtccagactcaccgacctccggtgcctcatgaagctgctcaccacctcgggcatgttcgccgccaccgccgccacgaccgacggcggcgagggcgagcccgccgtcgcgacgtcgaccatgtacacgctcaccgcagcgtccggcctcgtcgtcggcccgcgcgggctgtccaccgtggtgcgcttcgcggcgggccccgtcgccgtctccccgttcttcgacatgcacgcatggctgcgcgccgcgccggcggcggcgccgcccgcggcgaggtcgctgttcgagctggcgcacgggcggtccaggtgggacgcggcgaacgcggacaacgacaccatgaacgcgcacagcttcgtggagagccagctgctgatcgaggccgtcctcagggaccacgccggcgtgttccgcgggctgcgctcgctggtcgacgtcggcggcggccacggcgcggtcgccaaggccatcgccgcggccttcccggacatcaagtgcaccgtgatggacctcccccacgtcgtcgccgacgcccccgtctccgacgacggcaacctgcatctcgtcgccggcgacatgttccaatccattccaccagcggacgctgttctactcaaagtacgtatcacataggcacatatgattaagaacacgtgtaaatttcagaaaaccctatgttttatggtcaacattacacaaaaccctatgtggttgcacataactccaactattatggttctaaagtttcataaaaccccaccccaaaacatgttggtcagtatgaatttaatagaaattttaaaacatagattgtttaactctttactactttaaaaaatattgtttcagatatactagaactaatggatatttgaacaaaaagtggggtttaattgtatgaaatatttagaccacaaaacctgtggttacgtgtcacaagtgaaaatacacgtgttttctaaaattttgaccataaaacatgaggttttctgaaatttactcctaaattaattacctttgagattaacaaaaaaagataatcttcttcttccctagtacgtgttgcactgctggggagacgacgactgcgtgaggattctccggaactgcagggaggcgatcccggcgagggaggccggagggaaggtgatcataacggagctggtgctgggctcgtcggcggcgtcgcgcgacgccaacgtggcggaggcggaggacatgcacagcctcttcctcatgtgcatcagtggcgtcgggcgggaggagcgcgagtggagggccatcttctccgacgccggcttcggcgactacaagatcacgccggtgttgggccctatctccgttatcgaggtctacccgtga</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0539500, RefSeq:Os11g0539500