Os11g0558300

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Revision as of 09:13, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0558300| Description = Similar to Acyl CoA synthetase (EC 6.2.1.3)| Version = NM_001074629.1 GI:115485906 GeneID:4350728| Length = 4618 bp|...")
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Gene Name

Os11g0558300

Description

Similar to Acyl CoA synthetase (EC 6.2.1.3)

Version

NM_001074629.1 GI:115485906 GeneID:4350728

Length

4618 bp

Definition

Oryza sativa Japonica Group Os11g0558300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:22586279..22590896

Sequence Coding Region

22586386..22586534,22586742..22586805,22586945..22587034,22587152..22587208,22587299..22587347
,22587545..22587621,22587838..22587877,22587965..22588059,22588159..22588323
,22588469..22588579,22588667..22588754,22588843..22588909,22589016..22589091
,22589174..22589291,22589550..22589795,22589888..22590027,22590113..22590295
,22590389..22590508,22590667..22590717

Expression

GEO Profiles:Os11g0558300

Genome Context

<gbrowseImage1> name=NC_008404:22586279..22590896 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:22586279..22590896 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggagacgtacaccgtgaaggtgggtgaagcaactccggccgccggcggcaagccgtcggccgggccagtctaccggagcatctactccaaggatggcctcatgaagctccctgaagatatcctgtccccttgggacttcttcagtggagcagtcaagcagtaccccaagaacaagatgctgggccagcgcaaagtttcagatggcaaggctggtgactatgtgtggctaacatatgaagaagtgtaccagaaggtcattaagattggatcagccatcagaagcttacgtgtcaagccgggtggtcactgtggcatatatggatcaaactgtccagaatgggttatggctatgcaggcttgcaacagccaaggaatatgctatgttccactgtatgacacccttggtgcaaatgcagttgaattcataatggatcatgctgagatctctatagcatttgtgcaggaaagcaagatacaatcagtattatctgtagtcaagaggtgcagagcccacatcaaagcaatagttagttttggagatgtgacaagtgaactgaaaagagaagctgaacagttaggagtatcttgcttttcttgggaagaattttcttcaatgggaaagcaaaactatgaacttcccaagaaacaaaaggatgacatttgcacaatcatgtatacaagtggaacaactggagacccgaagggtgtgataatcacaaacagagctctaattgccggtgttatgaccacagaacatcttctgaaagtgacagacaaagtggtggctgaagatgattcctacttttcctatctcccattagctcacatatttgatcaagtaattggaaactactgcatttctaaaggagcctccattggattctggcaagcggacattaggtatctcatggaggatgtgcaaatgatgaaaccaacggtattttgtggtgtccctcgtgtttatgatcgtatatacacaggtattaatcagaaaattcagtctggagggatgatagccaaaagccttttccagtatgcatacaactacaaacttggaaatttgcggaaagggttgaaacaggatgaagcctcgccattttttgacaaaatagttttcagtaaaataaaagaagggcttggaggccggatacgactccttctatcaggagcagcacctttgccaagacacgtcgaagaattcatgcgggttaccagctgcagtgtacttgtacaaggatatgggctaacagagagttgctcaggatgcttcacatcaatcgccaatgttttctcaatgattggatcagttggtcctcctgtgacgacaatcgaggcacggttagaatccattccagaaatggggtatgacgcactctcaaatgtgcctaggggtgagatctgcttgaggggtcacaccttgttctccgggtactacaagcgccctgacctcaccgaggaagtattctcagatggttggttccatacaggtgatatcggtgagtggcaaccagacggcacaatgaagatcatcgacagaaagaagaacattttcaagctgtcccaaggggagtatgtagcagtggaggtcctggaaagcgcatacgtgcagtctcctctcgttacatcagtttgggtctatggaaacagctttgagtccttccttgttgctgtggttgtccctgagaagcaggccattgaggattgggctgcacaaaacaacaagactggtaactttgcagaattgtgcaacgatccgaaggcaagaatgtacatacaggatgagctaaacaaaactggcaaaagactagggttgagaggatttgagatgctaaaggcaattcacctagagacaacgccattcagcatagagaaggacctggtgactccaacttttaagctcaagagaccccagctgctcaaatattacaaggattgcattgatcagctgtacaaggatgccaaggtgggaaataaacagtga</cdnaseq>

Protein Sequence

<aaseq>MEETYTVKVGEATPAAGGKPSAGPVYRSIYSKDGLMKLPEDILS PWDFFSGAVKQYPKNKMLGQRKVSDGKAGDYVWLTYEEVYQKVIKIGSAIRSLRVKPG GHCGIYGSNCPEWVMAMQACNSQGICYVPLYDTLGANAVEFIMDHAEISIAFVQESKI QSVLSVVKRCRAHIKAIVSFGDVTSELKREAEQLGVSCFSWEEFSSMGKQNYELPKKQ KDDICTIMYTSGTTGDPKGVIITNRALIAGVMTTEHLLKVTDKVVAEDDSYFSYLPLA HIFDQVIGNYCISKGASIGFWQADIRYLMEDVQMMKPTVFCGVPRVYDRIYTGINQKI QSGGMIAKSLFQYAYNYKLGNLRKGLKQDEASPFFDKIVFSKIKEGLGGRIRLLLSGA APLPRHVEEFMRVTSCSVLVQGYGLTESCSGCFTSIANVFSMIGSVGPPVTTIEARLE SIPEMGYDALSNVPRGEICLRGHTLFSGYYKRPDLTEEVFSDGWFHTGDIGEWQPDGT MKIIDRKKNIFKLSQGEYVAVEVLESAYVQSPLVTSVWVYGNSFESFLVAVVVPEKQA IEDWAAQNNKTGNFAELCNDPKARMYIQDELNKTGKRLGLRGFEMLKAIHLETTPFSI EKDLVTPTFKLKRPQLLKYYKDCIDQLYKDAKVGNKQ</aaseq>

Gene Sequence

<dnaseqindica>108..256#464..527#667..756#874..930#1021..1069#1267..1343#1560..1599#1687..1781#1881..2045#2191..2301#2389..2476#2565..2631#2738..2813#2896..3013#3272..3517#3610..3749#3835..4017#4111..4230#4389..4439#actccaatgcaataacctcctcatcttcaagctctcatcagctagcaatccatattctcagcagagaaaaagatctgcattttcactgtgctttgcagagaaaaaggatggaggagacgtacaccgtgaaggtgggtgaagcaactccggccgccggcggcaagccgtcggccgggccagtctaccggagcatctactccaaggatggcctcatgaagctccctgaagatatcctgtccccttgggacttcttcaggttggtttcttggcatggtgccggtcaatttgacaatgcattattcaatttgctttcatcaagattgtgctaattttctagtgagaagcttgtatttcagtttataaggtttgagatttgagagttattatgtaaaaaaaaagatagatttgagagattatgatgattttttttttcatattttttggcttgtttctgttcttgaagtggagcagtcaagcagtaccccaagaacaagatgctgggccagcgcaaagtttcagatggcaaggtatgtcaaatctgcatatgtgataagaggcattcagattcttagtgattaagatttttttaaaaaaaacttatgattcaatgtgttttgattttattttgagatggtgcatttttttttaaaaaaaaacaattgttaggctggtgactatgtgtggctaacatatgaagaagtgtaccagaaggtcattaagattggatcagccatcagaagcttacgtgtcaagccggtgagcaaacgatgttgatatctctgtacatatatgttgggattttcttctgataatgttgatctctgtacatatatgtaagtacttactgaagataatgttgatctgtgtggttagggtggtcactgtggcatatatggatcaaactgtccagaatgggttatggctatgcaggtgaattcatcattttttttggtgtgtgtaagaattgttttgaaagagtaacctgatgttgggtttactttaatttcattgtttgttcaggcttgcaacagccaaggaatatgctatgttccactgtatgacacccttggtaggttctccatgccacaaataccgactcactaacaaaaacagctatgtgaatgcacataatttaagaataaaacatgaagtaaaaaaatacatctttataaaaatgctcagataaaacaagcattatccgtggtatctgttagtgtactttataatgtagcactgactggttcagtgccttcaaataaattgcaggtgcaaatgcagttgaattcataatggatcatgctgagatctctatagcatttgtgcaggaaagcaagatacaatcagtaagcaaagaaatgatccttgaaaaatattctgttctgcactgtattaactggcatgccaaatgcgcctcaaatttaaagctgatgatatgatgattgattaatagttactcagtacctgatacagtagaagcagaacttgtaaccagttgagaagatcagttctacaaatcattttatcttacatctaacaagtagttgaattgcaatcttcaggtattatctgtagtcaagaggtgcagagcccacatcaaaggttagttatctggaccctggcacggacctatcaggatgcctatatgtagttttatataattcatttctttcatttgtgcaatttcagcaatagttagttttggagatgtgacaagtgaactgaaaagagaagctgaacagttaggagtatcttgcttttcttgggaagaattttcttcaatggttagtctgaattcctattttgctacttattccaagccaaaatatttacttcattacaggatcataggtgtttttacaagtggtaagttattttctcagggaaagcaaaactatgaacttcccaagaaacaaaaggatgacatttgcacaatcatgtatacaagtggaacaactggagacccgaagggtgtgataatcacaaacagagctctaattgccggtgttatgaccacagaacatcttctgaaagtgacagacaaagtggtaagcctcttaaatcaaacacctgcaggctgcagttctcaataactaatgaagaattgatcatagcttgtccattaaatatcaatatctttatatatttcctgagatgttattctgaccatagttaatactaatatttatgcaggtggctgaagatgattcctacttttcctatctcccattagctcacatatttgatcaagtaattggaaactactgcatttctaaaggagcctccattggattctggcaagcggtatgagcagcacaatgaaggatgaataattctgtagactatcttctttgaccatctggcaggtgacacaaaccactttcttaccaggacattaggtatctcatggaggatgtgcaaatgatgaaaccaacggtattttgtggtgtccctcgtgtttatgatcgtatatacacaggtaaaatgcacaaaaaaagtcaaataattgtctcaattgcaaccacattttgtgattagcggtaatatgggaatatcatgaattgaaggtattaatcagaaaattcagtctggagggatgatagccaaaagccttttccagtatgcatacaactagtaagtactgcttataaaaaacattgaaaatacatgtatcacttaatcctgtccaactttacagttctcgtataactaaatctgtcacattgtcatcactcatcagcaaacttggaaatttgcggaaagggttgaaacaggatgaagcctcgccattttttgacaaaatagttttcagtaaagtacgtgcagattttaagacaacttttcattttcccccttagttagaacatctatgaaataattttatcatttatgttacagataaaagaagggcttggaggccggatacgactccttctatcaggagcagcacctttgccaagacacgtcgaagaattcatgcgggttaccagctgcagtgtacttgtacaaggatatggtgagttccaaaattcatgtggaaaatgtagactttaacctggacccatcataaccatatagcaacttagcatggttagttagttggtcctgattcagttcagtaattgacctgttatggacttaaaagatgtaaaatgcttgtatttctttaatttccaaattagcattagtaatcttaatcataaactcatagcataaatatacttacttgtacaatcccgagaagcatatcactcaccatgctcttggtatgcagggctaacagagagttgctcaggatgcttcacatcaatcgccaatgttttctcaatgattggatcagttggtcctcctgtgacgacaatcgaggcacggttagaatccattccagaaatggggtatgacgcactctcaaatgtgcctaggggtgagatctgcttgaggggtcacaccttgttctccgggtactacaagcgccctgacctcaccgaggaagtattctcagatggttggttccatacaggtaaagtcatttaccctcagtttcacgccttactgaatgatctgacagtggagataaattgtctcaaattagcaatcatcttatgtatgaaggtgatatcggtgagtggcaaccagacggcacaatgaagatcatcgacagaaagaagaacattttcaagctgtcccaaggggagtatgtagcagtggaggtcctggaaagcgcatacgtgcagtctcctctcgttacatcagtatgacaactgaaacaaaaactaagtcaaagtagtaacacattttttttgaggttcaactcaccaagaatcatctttgaatcaggtttgggtctatggaaacagctttgagtccttccttgttgctgtggttgtccctgagaagcaggccattgaggattgggctgcacaaaacaacaagactggtaactttgcagaattgtgcaacgatccgaaggcaagaatgtacatacaggatgagctaaacaaaactggcaaaagactaggggtatgccgataaccgtcatggaaattattatttaagttaacttctattcatgattaatgacaattcataagacattattcttgtgccatgcagttgagaggatttgagatgctaaaggcaattcacctagagacaacgccattcagcatagagaaggacctggtgactccaacttttaagctcaagagaccccagctgctcaaatattacaaggttagagagaacaaactctataaccatgatttcctggttttgttcttatgatttattttacggatgcaaacatgtgaatgaagttcttcatgacattattctggtgatctttataagactaagcatgtggataatggtagcacatttttttaatgcaggattgcattgatcagctgtacaaggatgccaaggtgggaaataaacagtgatggtaaaacagaaccaagtggttattgaatttcatgattattcagaaggaatcatgtacatatcaataatcatgattcaagagttaaaggcctatctttttaagataaagagttaaagcctatctgttgtgtctctagatgtaagaactaatatacatatatatactattctgtcattc</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0558300, RefSeq:Os11g0558300