Os11g0602200

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Revision as of 09:16, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0602200| Description = Similar to SET domain protein SDG111| Version = NM_001074761.1 GI:115486170 GeneID:4350865| Length = 5738 bp| Defin...")
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Gene Name

Os11g0602200

Description

Similar to SET domain protein SDG111

Version

NM_001074761.1 GI:115486170 GeneID:4350865

Length

5738 bp

Definition

Oryza sativa Japonica Group Os11g0602200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:25001012..25006749

Sequence Coding Region

25003072..25005513

Expression

GEO Profiles:Os11g0602200

Genome Context

<gbrowseImage1> name=NC_008404:25001012..25006749 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:25001012..25006749 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctggaactcggcagacaacttcagttccgatggataatgcagcagttgttgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacactttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgctgggggcactgaacaggcaatgcctgctagtattccaccaatgtttgcatcaccggctgcccctgcagaccccaaccagaggcagccatatgctgttcacttgaatggagctgctcctgctaacggtacagcaaacaacacaggggtcatccctgatttgcaaatagctgtggcaggtacagtggaatctgctaagaggaagaggggcagacccaagcgcgtgcaagattcttctgttccttcagctcatttggttccttcagctccaggaggtaacatcactgctgtccagacgcctccttcagcaaccacagatgaatctggtaagaagaagaggggacggcccaagcgggtacaagatgtacctgtcctgtcaactccttcagctcctcaggtagatagtacagtttttcagacacctgcttctgctgtaaatgaatctgttacgaggaaaaggggacgacccaggcgtgtacaggatggtgcagatacttcagctcctccaattcaatcaaaatataatgagcctgttttgcagacaccttctgctgtcaccttaccagaagatggtaagaggaagagagggcggccaaagcgtgtgcctgatggtgcactgattcctttaagtcactcaggtgtttcgatagatgatgacagtggtgaaataataacagggaaacgtggacggcctaggaaaattgatgtcaatcttctgaatctgccatctttgttttcagatgatcctagggaatctgttgataatgtactcatgatgtttgatgcactgcggcggaggctcatgcagttggatgaggtgaagcaaggagcaaagcagcaacataacttaaaggccgggagtatcatgatgagtgctgaacttcgtgcaaataagaacaagaggattggagaggttccaggtgtcgaggttggtgatatgttctacttcagaatagagatgtgtctggttggactgaatagtcagagcatgtctgggattgattacatgtctgctaagtttggtaatgaggaggatcctgtggctatcagtatcgtgtcagctggtgtgtatgagaataccgaagatgacccagatgtgctggtttacactggacagggcatgtctggaaaggatgaccaaaagcttgaaagaggtaatcttgcacttgaaaggagtttgcatagaggtaatcaaatcagagttgttcgtagtgtaagagatttgacttgtcctactggtaagatatacatttatgatggcctttataaaataagagaagcatgggtggagaaaggaaaaactggctttaatgtgtttaaacacaagctgctcagagaacctggtcaacctgatggcatagcagtgtggaagaagactgaaaaatggagggagaatccttcctctcgagaccatgttatattgcgtgacatatcatatggtgcagaaagcaagcctgtttgccttgtgaatgaagtggatgatgagaaaggtcctagccacttcaactacacaactaaactgaactacaggaattctctcagctcaatgagaaagatgcaaggctgcaattgcgcaagtgtgtgccttcctggtgataacaactgctcttgcactcatcgaaatgccggtgatcttccatacagtgcttcaggcatacttgttagccggatgcctatgctgtatgagtgtaacgattcctgtacatgctcacataattgccggaaccgagttgtacagaaaggttctcagatccactttgaggtgtttaagacaggagatcgaggttggggacttcgtagttgggatccaattcgggcaggcacatttatttgtgaatatgcaggagaagttattgacagaaacagtatcattggagaagatgattacatctttgagacaccgtcttctgagcagaatttaagatggaactatgcaccagaattactgggtgaacccagtctttctgactcaagtgagacacctaagcaactgccaataattatcagtgcaaaacgaactggaaacatagctcgctttatgaaccacagctgctcaccaaatgttttttggcaaccagttttgtatgatcatggtgacgagggatatccacatatcgcattctttgcaatcaagcatattcctccgatgacagagcttacatatgattatggtcagagccagggtaatgttcaactgggaatcaattctggatgtcggaagtccaaaaactgcttatgttggtctcgcaagtgcagaggttcctttggctaa</cdnaseq>

Protein Sequence

<aaseq>MAGTRQTTSVPMDNAAVVDAKPLRTLTPMFPAALGLHTFTAKEN SSSIVCITPFGPYAGGTEQAMPASIPPMFASPAAPADPNQRQPYAVHLNGAAPANGTA NNTGVIPDLQIAVAGTVESAKRKRGRPKRVQDSSVPSAHLVPSAPGGNITAVQTPPSA TTDESGKKKRGRPKRVQDVPVLSTPSAPQVDSTVFQTPASAVNESVTRKRGRPRRVQD GADTSAPPIQSKYNEPVLQTPSAVTLPEDGKRKRGRPKRVPDGALIPLSHSGVSIDDD SGEIITGKRGRPRKIDVNLLNLPSLFSDDPRESVDNVLMMFDALRRRLMQLDEVKQGA KQQHNLKAGSIMMSAELRANKNKRIGEVPGVEVGDMFYFRIEMCLVGLNSQSMSGIDY MSAKFGNEEDPVAISIVSAGVYENTEDDPDVLVYTGQGMSGKDDQKLERGNLALERSL HRGNQIRVVRSVRDLTCPTGKIYIYDGLYKIREAWVEKGKTGFNVFKHKLLREPGQPD GIAVWKKTEKWRENPSSRDHVILRDISYGAESKPVCLVNEVDDEKGPSHFNYTTKLNY RNSLSSMRKMQGCNCASVCLPGDNNCSCTHRNAGDLPYSASGILVSRMPMLYECNDSC TCSHNCRNRVVQKGSQIHFEVFKTGDRGWGLRSWDPIRAGTFICEYAGEVIDRNSIIG EDDYIFETPSSEQNLRWNYAPELLGEPSLSDSSETPKQLPIIISAKRTGNIARFMNHS CSPNVFWQPVLYDHGDEGYPHIAFFAIKHIPPMTELTYDYGQSQGNVQLGINSGCRKS KNCLCWSRKCRGSFG</aaseq>

Gene Sequence

<dnaseqindica>2061..4502#tgcctctcttctcaccgtgccaaaaccctagagctctcctccctcctctgtactcaccttccggcggcgcaccaggcgggctcgagggcggagtgggagacgggcggcgactccgggcggccgcgggcggcggcgagggcggggactctcctggcggcccagtcggcaaggacgtagggggcagcgagcagaccaattttttctccttccactcctcttcaaatcaaggtatactacaaatctgagcatactacttgtattttggggattgatttgttcagatctgagtgctatagtagtttctaagcttgtgcatgaatgcctgatagtgctagagttgccttttttttttgatattttgttcagatctgagtgctatatgttgtatgtctcaatatatgtgtgtatggatgtggtagacctgatttcgtatcaaactttggcattgtagatggacaggtttctggtttatgcggctgcatcgtatttgttgttgtcaatgatggctgtggttatcgagtctagaaaaaagaaaaggaaaagggttccaaggagagaagggattacctatgggccaatagatgaaggtggtttggattgattgaactgagcctcaccacatccttccatggccgcacgcccgtcgctggatggggatcatggatgggtaggtagcttgccgagggtttcgtatgcatggaacggggaggggttttgcgattgagctaatgtaagggcaatcgttgcgactctttcggtgctttgtttgtaggtttttatatttatgtgtgttaatgtaggagattggttttggccattaatgtgcttaggggataaggcgacgacatgcccctccgtgggctgttctcgcgccatatgtatttatttatggggggaggcaggcaatgtttcttgcttagccccctttaagagttggaataacataattggaatccttggatcggatgacaagaatggatagagacaaacggaattagctaataaagtgggtatggtgcccaatagcgaaacactaccatcagttatagctgtgatgatatgtcagcgcggtagcacacactggtatggcggttcgactccagtgatgcgtggggacggtttcactcttcatggcttttattgcatcatgtgtccaataggggccattggctgtgattctatctagtatgctgctatgagacaaatatttaaatgtgttctgttgcgctcatctcatagtcgacaaaatagagtgtgggtaaaagacacctacattagttgtcacgggaaggtgcaacccccttcccgctattgtgcttatacactaccgaagtgcatgcctagtgaccctccttgtgctgattcgctatctttgccatcctgtaaatgcatggctatcttgttccttttcccttctagaaagtgatttttttatcaaatgactctaatctatagcagtcacaaggtgttattctcaggaaacttttggttttcttaaatgatctaattattaacaagcatcattattctttgttttacatgcaaaatggtctccacccatctaattatcaacaagtgtcgttattattatttctatttttaacttgttgcgacaaaataggaatctgtttctaatcttagcttcatgtaaaatatctattcaatctcttccgctagttgataatcttctaatgggatgttctattgatttagtctttgcatgttgatttttatcatgctttagtaattcttagtcttctcatatcgatgtttacacatatctcttgtgttgcagttggttagctcaagatctgtgatgaacgaccaagcttccttttagatcttctgtttattctccttggtcagtaaaacagatgacttaaaaaatgctgcattaaataaacatagctttaatttcttgctcaattgtatactgataggtctcctttttacccctatccagcttaacctaaactatgactggtaaacaaacctagagaagatacaaaggaaataacggcataaacttttgttttgcaaaagattaacagtggcttaccatggctggaactcggcagacaacttcagttccgatggataatgcagcagttgttgatgcaaaacccttgcgcacattgactcccatgttccctgcggcacttggtctgcacactttcactgctaaagaaaactcatcttcgattgtctgtattaccccgtttggaccatatgctgggggcactgaacaggcaatgcctgctagtattccaccaatgtttgcatcaccggctgcccctgcagaccccaaccagaggcagccatatgctgttcacttgaatggagctgctcctgctaacggtacagcaaacaacacaggggtcatccctgatttgcaaatagctgtggcaggtacagtggaatctgctaagaggaagaggggcagacccaagcgcgtgcaagattcttctgttccttcagctcatttggttccttcagctccaggaggtaacatcactgctgtccagacgcctccttcagcaaccacagatgaatctggtaagaagaagaggggacggcccaagcgggtacaagatgtacctgtcctgtcaactccttcagctcctcaggtagatagtacagtttttcagacacctgcttctgctgtaaatgaatctgttacgaggaaaaggggacgacccaggcgtgtacaggatggtgcagatacttcagctcctccaattcaatcaaaatataatgagcctgttttgcagacaccttctgctgtcaccttaccagaagatggtaagaggaagagagggcggccaaagcgtgtgcctgatggtgcactgattcctttaagtcactcaggtgtttcgatagatgatgacagtggtgaaataataacagggaaacgtggacggcctaggaaaattgatgtcaatcttctgaatctgccatctttgttttcagatgatcctagggaatctgttgataatgtactcatgatgtttgatgcactgcggcggaggctcatgcagttggatgaggtgaagcaaggagcaaagcagcaacataacttaaaggccgggagtatcatgatgagtgctgaacttcgtgcaaataagaacaagaggattggagaggttccaggtgtcgaggttggtgatatgttctacttcagaatagagatgtgtctggttggactgaatagtcagagcatgtctgggattgattacatgtctgctaagtttggtaatgaggaggatcctgtggctatcagtatcgtgtcagctggtgtgtatgagaataccgaagatgacccagatgtgctggtttacactggacagggcatgtctggaaaggatgaccaaaagcttgaaagaggtaatcttgcacttgaaaggagtttgcatagaggtaatcaaatcagagttgttcgtagtgtaagagatttgacttgtcctactggtaagatatacatttatgatggcctttataaaataagagaagcatgggtggagaaaggaaaaactggctttaatgtgtttaaacacaagctgctcagagaacctggtcaacctgatggcatagcagtgtggaagaagactgaaaaatggagggagaatccttcctctcgagaccatgttatattgcgtgacatatcatatggtgcagaaagcaagcctgtttgccttgtgaatgaagtggatgatgagaaaggtcctagccacttcaactacacaactaaactgaactacaggaattctctcagctcaatgagaaagatgcaaggctgcaattgcgcaagtgtgtgccttcctggtgataacaactgctcttgcactcatcgaaatgccggtgatcttccatacagtgcttcaggcatacttgttagccggatgcctatgctgtatgagtgtaacgattcctgtacatgctcacataattgccggaaccgagttgtacagaaaggttctcagatccactttgaggtgtttaagacaggagatcgaggttggggacttcgtagttgggatccaattcgggcaggcacatttatttgtgaatatgcaggagaagttattgacagaaacagtatcattggagaagatgattacatctttgagacaccgtcttctgagcagaatttaagatggaactatgcaccagaattactgggtgaacccagtctttctgactcaagtgagacacctaagcaactgccaataattatcagtgcaaaacgaactggaaacatagctcgctttatgaaccacagctgctcaccaaatgttttttggcaaccagttttgtatgatcatggtgacgagggatatccacatatcgcattctttgcaatcaagcatattcctccgatgacagagcttacatatgattatggtcagagccagggtaatgttcaactgggaatcaattctggatgtcggaagtccaaaaactgcttatgttggtctcgcaagtgcagaggttcctttggctaaaatgcgaaccctgcaacaaaaacattaaagcataatctgccattgcaaggtgagtcattggatgttttctcatttcgtcaccgacagtactattttttcttgaaaattgcatgttcttatttgtgacaattatactttctttactatgttatggagttcatggctagatacttggtactttggagggtgcatagtgttccaccttttgaactggttgatggattggaatttccaaataaaaatggagttaagtaatttagtgccttccagcaaaatgaagttgttatagctggttcttattcatttaagtgaagtcagaactcacaacttctgtgagttgaaggctgctccttcacattcgctacgaaattttactcgcgaactgtgatttagcctgtgtttcctgtactactatagatttatatactgttataagcggccaacatggaaaacttggtaaatggaaattatttgaaaaacatatacacattagttttgtgcatacatatagttgaatcacaaaatatttgttcatgagtaccactatccattttgaactttctagcgttgaacacaaataatatgaccagaagcaacataatgttatgtaaatgtatttataccatgaagtatcttcagtacctttctaaaagcctggccctccttacgtcatattcttattactgagcatattttctttaatttttttaaagtttacatcactgtcaacacaataaaagctaaatatctcctttttggcacattttgcctgtagatccatgtcgattaacagatattggcaatgtattccatctccattctgacaaattgaactgtccttacctacagaagtaggcgattgttgtagaactatgaagcagcagggtgcattcagtgtttcaagatgccatgtaataaggttggccttcgtctggatgagaatgcaaaagagggtatttattgcagaaagcattggcattgtaccaaactttattggaataactagtatttagcgtagcatctgaattccgagaaggttggaaccgtgttactatgttcttgtagtgtagttgtttctcctgtttaagagaactttaccaactgtagaatgccatgcatatggttgcatcgcaagattttcctgggcttcgcatgccagtcgtgcactcgccgtatgtttttctgtaatattaatggctacataatgcatcctgtaataatcatggtagtagctcc</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0602200, RefSeq:Os11g0602200