Os12g0189500

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Annotated Information

Function

Please input function information here. The increase in IAA content was strongly correlated with the expression of putative IAA biosynthesis genes, OsYUC9, OsYUC11 and OsTAR1, measured by quantitative reverse transcriptase polymerase chain reaction. These results confirm the importance of the tryptophan aminotransferase/YUCCA pathway in this system. All three genes were expressed in endosperm; expression of OsYUC11 appeared to be confined to endosperm tissue. Phylogenetic analysis indicated that OsYUC11 and AtYUC10 belong to a separate clade of YUCCAs, which do not have orthologues outside the Angiosperms. This clade may have evolved with a specific role in endosperm. Expression of tryptophan decarboxylase in developing rice grains did not correlate with IAA levels, indicating that tryptamine is unlikely to be important for IAA synthesis in this system. In light of these observations, we hypothesize that IAA production in developing rice grains is controlled via expression of OsTAR1, OsYUC9, OsYUC11 and that IAA may be important during starch deposition in addition to its pr eviously suggested role early in grain development.

Expression

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Evolution

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References

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Gene Name	Os12g0189500
Description	Pyridine nucleotide-disulphide oxidoreductase, class I family protein
Version	NM_001072867.2 GI:297612801 GeneID:4351695
Length	8650 bp
Definition	Oryza sativa Japonica Group Os12g0189500, complete gene.
Source	Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome	Chromosome 12
Location	Chromosome 12:4507750..4516399
Sequence Coding Region	4507750..4507887,4514763..4514909,4515209..4515331,4515422..4515658,4515788..4516399
Expression	GEO Profiles:Os12g0189500
Genome Context	<gbrowseImage1> name=NC_008405:4507750..4516399 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>
Gene Structure	<gbrowseImage2> name=NC_008405:4507750..4516399 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>
Coding Sequence	<cdnaseq>atggagaaggctctagttctgattgttggagcaggcccatctggtcttgcaacagcggcgtgccttggccagctctctataccctatgttattatcgagcgtgaggattgtaccgcgtcgctgtggcgtaagcacacatatgatcgcctcaagcttcacctcgcaaaggagttctgcgagatgccccacatgccatatccggaagacacaccaacctacatccccaagattcaatttttgaggtatatggatgattatgtggagcatttcaacatttgtcccaaatttaactcatctgttgagtcatgtttgtatgatgatgtgcaaaaatattgggttgtcacaacacatgaccaagtgaatggcatggtgtccaagtatgcagctaggttcttagttgtagcaagtggtgaaaatagtgcagggaacattcctagcatccctggactagaggatttctctggccatgtcatacactcatcaagctttaggtcagcagattcctatgctgcgcaaagggtgcttgttgttggatgtggaaactcaggcatggagattgcctatgatctttcaagccatggagcaaatacctccatagtcatccgcagccctctgcatgtgatgacaaaggagctgattcacatggggatgaaacttgcaagctggagcctcccagtgaaatttgttgattttattcttgtggtccttgcatatctctggtttggcaatctctcaaagtatggcatcgtgaggcccaataaggggccattgcttcttaaggcaaatactggtcggtcagcagtaatagatgttggcactgtggagttaataaagaaaggggatatcaaggtctttggtacaatatcttgcatcaagggaaatgttgttgaatttgatgatgggaaagaaagttactttgatgctattgtttttgctacaggctacacaagtactgcaaacaactggcttaagaatggtgaggatatgatgaacaaagaaggcatgcccaagaaggacttcccaaatcactggaaaggttcaaatggactctactgtgttgggtttgcgaggagaggattatctggtattgctcatgacgccaaaaacgttgctaatgactggatggaagaagacttgacaccaaagcccgccgttggcagttctaagaacagtcagccctcacttatcacatccatggatggtgaacgatgctttgccttagtggcagagcaaactgtttccattggaggcaattga</cdnaseq>
Protein Sequence	<aaseq>MEKALVLIVGAGPSGLATAACLGQLSIPYVIIEREDCTASLWRK HTYDRLKLHLAKEFCEMPHMPYPEDTPTYIPKIQFLRYMDDYVEHFNICPKFNSSVES CLYDDVQKYWVVTTHDQVNGMVSKYAARFLVVASGENSAGNIPSIPGLEDFSGHVIHS SSFRSADSYAAQRVLVVGCGNSGMEIAYDLSSHGANTSIVIRSPLHVMTKELIHMGMK LASWSLPVKFVDFILVVLAYLWFGNLSKYGIVRPNKGPLLLKANTGRSAVIDVGTVEL IKKGDIKVFGTISCIKGNVVEFDDGKESYFDAIVFATGYTSTANNWLKNGEDMMNKEG MPKKDFPNHWKGSNGLYCVGFARRGLSGIAHDAKNVANDWMEEDLTPKPAVGSSKNSQ PSLITSMDGERCFALVAEQTVSIGGN</aaseq>
Gene Sequence	<dnaseqindica>8513..8650#1491..1637#1069..1191#742..978#1..612#atggagaaggctctagttctgattgttggagcaggcccatctggtcttgcaacagcggcgtgccttggccagctctctataccctatgttattatcgagcgtgaggattgtaccgcgtcgctgtggcgtaagcacacatatgatcgcctcaagcttcacctcgcaaaggagttctgcgagatgccccacatgccatatccggaagacacaccaacctacatccccaagattcaatttttgaggtatatggatgattatgtggagcatttcaacatttgtcccaaatttaactcatctgttgagtcatgtttgtatgatgatgtgcaaaaatattgggttgtcacaacacatgaccaagtgaatggcatggtgtccaagtatgcagctaggttcttagttgtagcaagtggtgaaaatagtgcagggaacattcctagcatccctggactagaggatttctctggccatgtcatacactcatcaagctttaggtcagcagattcctatgctgcgcaaagggtgcttgttgttggatgtggaaactcaggcatggagattgcctatgatctttcaagccatggagcaaatacctccatagtcatccgcagccctgtaagtaaataatacatttgcataaaagtttcctttctttattttgcctccctgttttccaggtcaagttattgtaagtatcctattaaatcattttcttacaccacaaattcttgaattattctaaagctgcatgtgatgacaaaggagctgattcacatggggatgaaacttgcaagctggagcctcccagtgaaatttgttgattttattcttgtggtccttgcatatctctggtttggcaatctctcaaagtatggcatcgtgaggcccaataaggggccattgcttcttaaggcaaatactggtcggtcagcagtaatagatgttggcactgtggagttaataaagaaaggggatatcaaggtaacaaaattcttgacacaacatagaaaagtctatataaattctatttggtacttgacaggttctataaggaatttatgtggcatgtaggtctttggtacaatatcttgcatcaagggaaatgttgttgaatttgatgatgggaaagaaagttactttgatgctattgtttttgctacaggctacacaagtactgcaaacaactggcttaaggtatgtaatatgttgctcatatggtaaatagtaaatacaaaaattattgcaattagatttagttgttattttctctctcctgcatacctcaagtggggcatcaaattaagagtgcctacaatactattagacagatttagaaagaaaagcatttgcgtgattgactcaacaaaattagtgataaaacctgttataaaattatagttataattagaagacaatggtgctatcttcatatttaactttctttctttctgtggaaatatttgttaataaaataattatgattaaaaacgcagaatggtgaggatatgatgaacaaagaaggcatgcccaagaaggacttcccaaatcactggaaaggttcaaatggactctactgtgttgggtttgcgaggagaggattatctggtattgctcatgacgccaaaaacgttgctaatgacgtcaaggccttcctagatttgatggcaccattctaattattatttgcactggaatgatgcctatcaaatagtattgtggtaccttctacaatagtggtgtgtacttaatgttacattatgtttgaagcaagctaaatgttatgcaatctccagagttgtttaaataattatattttcttaatcgacatgttggatgagcttttatttaaagctctttgctggaatacatgaatatgtggtttattctttataatgtgtgaagccctttgtttggatccatgaaaaataaaatcagaaactcatgtcaaacctcccctcacacctgtattacctatcctactctaaatcataccccctcctccccccatcggcaccatagttgttcagccagtgacgccctgcccttttgaaagaagttgagcatcactgccggttcatggctgtttaggcgggaaaattcactccaacgccatgaactggtaaagattggcaatccctgttggctcacaccgaaccgatagagatcagtgggcaaggattgccctttctgtaccagtaacacctttatccactccagttatgaaaaaaaaatgctctttagagttgtttgttccttatttcaactcaacacaacaatatggagttctaaaaaataacacaacattatggagaatactaaataatagtagagatcatagattacttagaagttagaacatacctaaaagggagattttttttttaaaaaaagaattcattttcaatcctatgccttattttcactgacatttggaaagggagtagtatgtctatttggggaagaggttcttttttttttttggggggcggggggggggggggggagggggaagggagggctgctttgattaattcctcccattgtattacatttcacttggatggatcatacctcctattcttctagataccacgaacaaatgtcattgaattatgagatagactaaaatctgcgggtgtcaaagatttcagaaaacttgagtctttgatgtaaatgttggtggaaattgcacccttttatatcaaatgcccattgggtttgtgcagctagcctaaaaaagattattccccattttggaaggttatgtgttacaaatcagacatctccgcaatattttcagaaaactaaagtgggtactaatactatatttttgcatgatcctggcctaaggtggtattacaatctgttgagatatgcaatggtcaaagagtggtactgtacattctattagagagctagattttattttgaactctagatgtgggtaactgatgatactggattgacgaaagccgaaagcccatctttatgagttttttaaggacttggtaggatcaatatataaacttttaataggagaaaatgtacatttactataaccaatttttacatgacgcctcgacaggaggcacccctcccctaggcatgcctctaaagttagccctgttagtgttctatcccttttgagcagaccattcttgagtaggttacaaatgtcacactgtttgatactccatttgtcctaaaatataaggtggccatatatagttttagcaaaaccaacatatgtaggttttgacaaataacaaactaacaatatactgtatatgtttaatgccatccatttcatatcctaagattcatatttgaaagcactcttgtatgatgtaattttctagttcttgataatatattattgaagaaactaattgttaaaatataatattgtagacagtgtaagaaaactaatatgctttatagtttgagactgataggactattataaaaaggtcctcctattacacttgatgagaatgatggtaaaattgcatgatatataatttgtgaaagctggcacatattcaatgaaatcgatatattctttggatgatcacgggtgtttctgggccaaatttctactttatttgtaatcccgagagcttcatctacaagtaaaaaaaaaatccaggtttttagttgataatgtagtctatcttaataaaggaagagatgcaaaggaggaaatttcctgcaaacaccggaatgtcttttcttccctgactgaaaatacagttttgttctttacatgtaaattagctagcaaagttatttaggggcattacaggtttagatatgctttggcaccaaaaccaggtacagaacaaatgttcgctggatgcactgcatcgatcttgatgtactccctatgttcaattatataagacatttttggtttgttctaatcaaacttgaatatacatattttcagtttgaccaaacaatgtagtagtgtttccaacacaaaacaaatatactacagaaatatatttaatggtggatttaatgaaaccaataaagagtatgcgataatagtaagtccatctaatgcataaaatcctggtgcattactatcctaggttaatatggcaccacctatactaagatcttcttctttctcttcatgtttgattgtacatcttgatatttccttccatgtgcatgcatggtttcaacaaaaaaaaaggtaacactgacttgttccaataatacacattgtagttatctatagcccttttttacatacatattacccccattatgtttgcagttgttacccccctttatctgattagagcataaaggacctgtggaatttttactcttataacccgactttttttatctattccataacctacaaatgggtttcctattttgatttgtaaaaataacaaagagaaagcctttgctctgatggtcacaatccttcgatttattccttttgtttgtaataatgttagtaaagtaatccatcagttgatttataaccccctctcgccaatgaaactgattcacttttatgaagtgaggagaaagaagggatcaattaatcgaggatccaatattttagtccctcgaggaagtctcctaaatcattggtagtattcatttgactctactagttacaactaataagacatatttataagaaagaaaatgcagcaggaggattactgatttcaattagttactatgtgcaaaattcagtgctcgcgtgccggggggggggggggaggggcggcaacggagttattgttcctacatacaataaatagtgatgacatgctctagtgaagttatttcagactggatccacatgggtgtctttcttttgtttctttggaaaggcttgttgtagctatctcatcttgataggtcgaaagattcgttcgttagtaacgacttgcttaaacaaagttactccaattttggtccatgtgcatgcatcttaattttttttcttttgttttgaaatccggttgtcatagccatctcaatataggccaaaataagtttttttggtgtttctttccttattagccctaaaaataggcgacaaatgtccaaaattgcaccactgacctataaggatgggcccctagctaagaattaggtgcgactgagacgaggtaaagacctatatatatactaagacatgtaacaccttttttatttttctatttggaaatattcttttccctatttcataggaatgaactaaatttcaaaaaagaaaaagcacacaattactacaaaaaagtatgtgattgaaccattgaccaaagatggcgattattgtctttttcacttggcaaagtaggcaacataatccatctctcggccgccgcttggccatgtcaaactggcttagtgataaaggtcatccccttcgtcgattggctcacaagtgctagaaaaaggggaaaataggacatggcctttggcaggatgtgtttgttgtgtacttgcggtgtgggcggaaagtacaagaagcatgataattgggctgttcagtacataccgatgagtgaggcaacttgaggtagacaaagcaatgaagtgtatggctttggtggtaagattgagtagcctcgtcctccacatttgggtgaacaacaatgcttgatacatgaatatagaaaaagcattggacaatatgcataatggcatgaggcaataacactaacaagccacattgtagactgagatatatattgagtaccacaaccttgttgtaggtagcaaggtcagaacaacactgcaatacattgaaagacataattgactatctttcttggaattatgagcatgttgatacacattccactacagaacaaccattgttcttcaattacctgaataatttgatcctggcccattactggaaaaaataagatggatgagattgcatgcagtcatagttagtgctctggctaggttgctcgtgccaccaagatgcgagattagcacccgagagagtataatgtgtgaaggcacttcctgtgagctgagcctaagggagattacagtgcgtgaagttgcatctgaagtctcaggtctctcgcccacttatggttttgcataatcttcaggacttaacatatgtacctgatgcaagttcagctttgtagaagcataaaatatatgtgacacaagttcaatatgggcgcaactaaaaaacacaatactaactaattaaaagacgcttaattcttttgttcatcaagtctttgtaagagaacttgtcgatgcaaaaaaacataccaaatttggtcgttaacagaactgtacgaagtctttttcatgagagtttaagctaatgagatggctaataagcgagtgacctagtgcttatttctctgtgtcatattcagttgtgtgcgtggatgtatcacgtgacaagtgtttcgctcaacaacaatggtacatatatccaaatgacatagaatatgttgcttgaataaaacataactgatactcgcccaattggaaaattagtcaccgaagccctaccacagttggttttgttttgtacttttatttgagagaaatcaagagatagacaaggataaaagagtgaccagagcgatggtgattatagtgttaaattgtcgttaggaaatcactcaatgtttaaggggctgtttggttcatgatcctggtgaaaaggagcctggcctaatccctccctgtcacatggttgagtgttgtttggttcaaaggcctaaaggattttcaggatgcctgacttgaaccactgccttgcatcctttagcctgcgtccggcttcccattttggagctggcccgagcttcaggcacgtcaactccatgcatgcagttgcttgcgacattgtggtcggaataaaaaatttggcaatagtcccatctatattgattaaatcggaagtatgagcttgttttgattttgattcaaatccttagtttttttcctctaaattaatacttgttaattgctataattgaggagtacgagtttatcagtgttcattgttactgatagacaagagataatcgatgaatgatgaatcttccataacttaggtaagtgttttaccaacatatgtagtgtagtaaaaaaatgaattcaaccctttcgtgcttactataactaattaatttggttttctatttgctcctttaactctaaccctagctctatttattggcttgaacaaggtacatcttatttgaaatgaattgaatgaataaggcaaaaaagaaaaaaaatcattcttttggattcctggtatcctacaactctttttcacactacttacaaattctttttttcttggtcatggataaggctatacataaaatcaatgaatacgttaatatgtatctattaagttgatacatatcttaattaccaatgtgtaatcttgaactcaggctttcctagtcaagcatattttaccaaattctcaagtagctctcagacatacgtttttatcaatcatgttgctcaggtcactaaccaaacaagccctaagttgcaagaacacaaacacgactgatttcgtcaatgagcccaagtcgttggtgtttttaccagatgactcatcactatcggttcctttagagatgacactgatatcactgatggttcgtaattaattaacaagaaattactatgatacttaagtttccactaatgtatcacggttagttcataacaacaaccagcaccgatattcaatggaccagacctcaatggatcggatcatattcaagactatcatgtccattgagtatcaaactatatgtcattagtactcaaatgataatttgaaagaaaatggtaactttttcataagtcaggtgaagacaaacattatgtaaaagtatatagtttaaccaaagctacagctttgtagttgatgattttttgatttttgagattgtttacatgcccaagttgtcaaatctactcggacaaattttttgatattcccaaatgtccttggattgagactaactctacataaaaattggcgacacgatctattaatttttagttgacaatattttcattgtaagtcatttatatgcccgaatatatgttagaagtgttggctctatttggataaacgaaattttaaaatttttcaacgacttcagacaaacatgaactctatatggaagttgtggagatcgatgagatctacagatttgtcattgaagaccgaaaataatagcataagctatttaggcaaaaagagcattatagttgagatgggaggctgtggagatatagttgatcctatgtttgaatcctatgtacctcacacgcacgtacttcatgtgagaaatcatgtgaattgtgatttgtgatgtgtgtagatacttgatacgaaatacttttccaagtttttcatcgtggagagaattcaaaacccggtgcacaactatcaaatacatgttgatgtctttttgttgttctaactagtattaattgttcttaaataaagtggatggaagaagacttgacaccaaagcccgccgttggcagttctaagaacagtcagccctcacttatcacatccatggatggtgaacgatgctttgccttagtggcagagcaaactgtttccattggaggcaattga</dnaseqindica>
External Link(s)	NCBI Gene:Os12g0189500, RefSeq:Os12g0189500