BGIOSGA002089

From RiceWiki
Revision as of 18:15, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA002089

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA002089, complete gene.

LocusTag

P0492F05.31

Ensembl Transcript ID

BGIOSGA002089-TA

Ensembl Protein ID

BGIOSGA002089-PA

Length

5409

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:7425560..7430968

Sequence Coding Region

7430757..7430968,7429913..7430034),complement(7429729..7429817,7429613..7429651),complement(7429298..7429391
,7428567..7428609),complement(7428378..7428478,7427714..7428272),complement(7427551..7427638
,7427251..7427418),complement(7426416..7426984,7426163..7426301),complement(7426019..7426087
,7425805..7425924),complement(7425560..7425673

Genome Context

<gbrowseImage1> name=IndicaChromosome01:7425560..7430968 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:7425560..7430968 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAGGGGAAGCACGTGGTGATGTCGGCGGTGGGGATCGGGATAGGCGTCGGGGTGGGGCTGGGGCTGGCGTCCGCGCCGTGGGCAGGCGGCGGCGGGCAGGGGGCGAGGGTCGGGGTCACGGTGGAGAGGGTGGAGCAGGAGCTTCGCCGCCTCGTCGTCGACGGCGCCGACAGCAGGGTCACCTTCGACGGGTTCCCCTACTACCTCAGCGAGCAAACGCGTGTATTGCTGACAAGCGCGGCGTATGTTCACTTGAAGCAAGCAGACATCTCACAATACACCAGGAATCTTGCACCAGCTAGCCGTGCGATTCTATTGTCAGGCCCTGCAGAACTTTACCAGCAAATGCTTGCCAAAGCGCTTGCCCACTATTTTGAAGCAAAATTGCTGTTGCTAGATCCTACAGATTTTCTCATAAAGATCCATAGCAAATATGGTGGTGGTAGCAGCACAGACTCGTCTTTCAAAAGATCCATATCTGAGACGACCCTTGAAAAGGTGTCTGGATTACTTGGATCTCTTTCGATTCTACCACAAAAGGAGAAACCCAAAGGAACTATTCGTAGACAAAGCAGCATGACGGACATGAAATTAAGGAGCTCTGAAAGTACGAGCAGCTTCCCGAAGCTTAAAAGGAATGCCTCAACTTCATCTGATATGAGTAGTCTGGCATCACAAGGCCCTCCAAATAATCCAGCTTCTCTCAGACGTGCTAGCAGCTGGACTTTTGATGAGAAGATTTTGGTGCAAGCAGTATACAAGGTACTGCATTCAGTATCTAAGAAGAACCCAATTGTTCTCTACATAAGAGATGTTGAGAAGTTTCTTCACAAGTCCAAAAAAATGTATGTCATGTTTGAAAAACTACTGAATAAACTTGAAGGGCCAGTGCTAGTCCTTGGCTCAAGAATTGTGGATATGGACTTTGATGAAGAGTTGGATGAAAGACTAACTGCTTTATTTCCATACAACATCGAAATCAAGCCACCAGAAAATGAGAACCACCTTGTGAGCTGGAACTCCCAATTAGAAGAAGATATGAAGATGATTCAGTTCCAGGATAACCGGAACCATATTACGGAAGTCCTTGCCGAAAACGACCTTGAGTGTGATGATTTAGGCTCGATATGCCTATCTGATACTATGGTTCTAGGTAGGTACATTGAGGAGATTGTGGTTTCAGCAGTTTCTTATCACCTGATGAATAAGAAAGATCCGGAGTACCGAAACGGAAAATTACTTCTATCTGCAAAGAGCTTGTCCCATGCACTGGAAATTTTTCAAGAGAACAAGATGTATGATAAGGATAGCATGAAGTTGGAAGCAAAGCGTGATGCTTCAAAGGTGGCTGATAGGGGAATTGCTCCATTTGCTGCAAAATCAGAAACAAAACCTGCAACTTTGCTACCACCAGTACCTCCTACAGCTGCTGCTGCCCCTCCTGTTGAGAGCAAAGCAGAACCAGAGAAATTCGAGAAGAAGGATAATCCATCTCCAGCTGCAAAAGCACCTGAAATGCTGCCAGACAATGAGTTTGAAAAGCGCATCAGACCTGAAGTGATACCTGCTAATGAAATCGGTGTCACATTTGATGATATTGGTGCATTAAGTGATATCAAAGAATCCCTTCAAGAACTTGTCATGCTCCCTCTCAGAAGACCAGATCTCTTCAAAGGGGGTCTTCTTAAACCTTGCAGAGGTATATTACTTTTTGGTCCTCCTGGAACTGGCAAGACGATGCTAGCCAAGGCTATTGCAAATGAAGCTCAAGCGAGTTTCATAAATGTTTCAATGTCGACTATCACATCGAAATGGTTTGGTGAAGATGAAAAGAATGTTAGAGCATTGTTCACATTAGCTGCCAAAGTATCACCGACGATCATTTTTGTCGATGAGGTCGACAGCATGCTTGGTCAGCGGAACAGAGCTGGAGAGCATGAGGCAATGAGGAAGATAAAAAATGAGTTCATGACACACTGGGATGGCCTCTTGTCAAGACCAGATCAAAAAATTCTTGTCCTTGCTGCGACCAACCGACCCTTTGATCTTGATGAAGCTATCATTCGAAGGTTTGAGCGCAGGATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATTTTGAGGAGCCTTCTGTCGAAGGAGAAAGTTGATGGCGGTCTAGACTATAAGGAACTAGCCACCATGACTGAAGGATATAGTGGCAGTGATCTAAAGAACCTGTGCACAACAGCAGCGTATCGTCCAGTGAGGGAACTGATCCAAAAGGAAAGAAAGAAGGAACTGGAGAAGAAGAAGCGGGAACAAGGAGGCAATGCTTCAGATGCTTCGAAGATGAAAGAGAAGGACGAGACGATCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAGGTGGCGGCAAGCTTTGCTGCTGAAGGAACAATAATGGGTGAGCTGAAGCAATGGAATGAGTTGTACGGTGAAGGAGGCTCCAGAAAGAAACAACAGTTGACATACTTTCTCTGA</cdnaseq>

Protein Sequence

<aaseq>MEGKHVVMSAVGIGIGVGVGLGLASAPWAGGGGQGARVGVTVERVEQELRRLVVDGADSRVTFDGFPYYLSEQTRVLLTSAAYVHLKQADISQYTRNLAPASRAILLSGPAELYQQMLAKALAHYFEAKLLLLDPTDFLIKIHSKYGGGSSTDSSFKRSISETTLEKVSGLLGSLSILPQKEKPKGTIRRQSSMTDMKLRSSESTSSFPKLKRNASTSSDMSSLASQGPPNNPASLRRASSWTFDEKILVQAVYKVLHSVSKKNPIVLYIRDVEKFLHKSKKMYVMFEKLLNKLEGPVLVLGSRIVDMDFDEELDERLTALFPYNIEIKPPENENHLVSWNSQLEEDMKMIQFQDNRNHITEVLAENDLECDDLGSICLSDTMVLGRYIEEIVVSAVSYHLMNKKDPEYRNGKLLLSAKSLSHALEIFQENKMYDKDSMKLEAKRDASKVADRGIAPFAAKSETKPATLLPPVPPTAAAAPPVESKAEPEKFEKKDNPSPAAKAPEMLPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAQASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRNRAGEHEAMRKIKNEFMTHWDGLLSRPDQKILVLAATNRPFDLDEAIIRRFERRIMVGLPSLESRELILRSLLSKEKVDGGLDYKELATMTEGYSGSDLKNLCTTAAYRPVRELIQKERKKELEKKKREQGGNASDASKMKEKDETIILRPLNMKDLKEAKNQVAASFAAEGTIMGELKQWNELYGEGGSRKKQQLTYFL</aaseq>

Gene Sequence

<dnaseqindica>1..212#935..1056#1152..1240#1318..1356#1578..1671#2360..2402#2491..2591#2697..3255#3331..3418#3551..3718#3985..4553#4668..4806#4882..4950#5045..5164#5296..5409#ATGGAGGGGAAGCACGTGGTGATGTCGGCGGTGGGGATCGGGATAGGCGTCGGGGTGGGGCTGGGGCTGGCGTCCGCGCCGTGGGCAGGCGGCGGCGGGCAGGGGGCGAGGGTCGGGGTCACGGTGGAGAGGGTGGAGCAGGAGCTTCGCCGCCTCGTCGTCGACGGCGCCGACAGCAGGGTCACCTTCGACGGGTTCCCCTACTACCTCAGGTGATTAACATCAACAACGTCTTTTTTTTTCCTCCCGTTCATCGAGCTATGCAACTGTTCCGTCACCTTGCATCGTCAGATTTTTTTTTTTAGGATTTTTTTTCCCTTTGTTCTGTCCTGTATAGGGGACATGTTTTTCCCTCCGTTCTTATGATCTTATCATGCACAAATAATTCTGAGTCTGTGATATGCAAGCAACAGATTTACAGATGAACTGTGTAGTTTGGCAAATTAGAAAAAGAGAGAGAGAGAGAAAAATGTTTTGAAAGGTTTCAACAATCTTTTGGCTCGGAGATCACAAAATGAACGCTCTGACTGAAGACAGTGGCACTGCTATATTTCTGTAGATTAGCTTGTTCATAATTTTGCGTGGGAGGCGAAGAGAGACAACCCTGCTTTTCTGAATTGTTCCTCTTTGTGATTGAAAAATGGCAGCCTTGAAAGGTAGTGCTGGTAGAATTGGTTAAAGAAAAAAAATGAGGGGACGATAGAACACATACAGAACAACATCGATGAGACGTCAAACGTCTGTTTGTTCACTTTCAAGATCAAAATATTAGCTGGAATTCAATTTTAATGATCACCCAGCAGGACAAGGAAGATGCTAGATGAACGATAGATTTCTAGCTCTGTTCTCTTTTTTAATGTACACGTTCATTTCCTTTTCCACCCTCCATGTCATCATCCTTTGTTTCTCTTTTTCCCCAAACTATGATTTGCAGCGAGCAAACGCGTGTATTGCTGACAAGCGCGGCGTATGTTCACTTGAAGCAAGCAGACATCTCACAATACACCAGGAATCTTGCACCAGCTAGCCGTGCGATTCTATTGTCAGGCCCTGCAGGTAAATCATATTCCATTGCACAGGTTAAGGAGTTGCTGAATCACTCTTCTTCTGGCCCTGACTAAGTTAAGGCTAATTAAGTTCCTATCTTGAAGAACTTTACCAGCAAATGCTTGCCAAAGCGCTTGCCCACTATTTTGAAGCAAAATTGCTGTTGCTAGATCCTACAGATTTTCTCATAAAGGTGAGTTTGGCTGGCACAGATTTCCTTTCATGTACATTTTTAAGTATGTTTGTGATACAGACTTTTCTTCCTCACAGATCCATAGCAAATATGGTGGTGGTAGCAGCACAGACTCGGTAAGAACTCAACACGCTTTGTCGTATTTGTTGTAAGGTCACCATTCTTCTGATTTCCGAACCTTGGAGAATATAAATGTGTGTGTCCTGTTTTGCTTATTCTTGACATTGTAGTGCTTTTTTTTCCCTACATTGTTGCGAAATTTAGAATTTTTATCAACTGCCCAAGTAGTGGCCAGTTTAAATTAACTATTAACTTGTGAGCACTTTCTCCTTATCAGTCTTTCAAAAGATCCATATCTGAGACGACCCTTGAAAAGGTGTCTGGATTACTTGGATCTCTTTCGATTCTACCACAAAAGGAGAAACCCAAAGGTGACATGATCGACTTCACAATAAGAAATGTTCAACTGTTCCTTATTCTGAAGTAGGGCAGAATAATTATGTTTGCTTGTCAGTAGTCTGCTTCAGTTCTTGCATGGAATTTTTGAACTCTGCTCAGTCATTAGCAGACGACATGAACTTTTCTGGTTTCATTTCTATTAGAACAAACTAGATGGAACATGTATTTTCATGTGAAATTCACACTTTTGCACACCACAGTTGAGATCTTGAATACAACCATGTTGCTGTCATTCTCAGTTATCTGAAACAAAAATGTCTAGCGATTCCATCTGTATATGATGTTATTTATATGGATGAATGGCATCGGTATTCAAACAGAGTTTCAGAAAACTACAATTCCTGCTGAACTGAGAGAATGAATAAGTACACTTACTGCCAGCAAAGCACAAAACAACTGTTCTTGACTTCACATAATTTAGCCTCAATTTGGTCTGAAATTCTGATGCTGTGAACGAATGTAATAGTGCTTACCTTAAAAAAAATTGAATTTGCTTGCATTTGCAGAATGTAGAGCATAACTTAATTGTATTTCGTTCTACCTCAGAAGTTTTGCAGCTGAATGACCGTAGAGCATAACTGAATTATGTATTTCATTCTACCTCAGGAAGTTTTGCAGCTGTATATTTGTTATCTTAGTTTGGTTTATTTTTTATCACAGGAACTATTCGTAGACAAAGCAGCATGACGGACATGAAATTAAGGTACTGGAAAATTGTGCTTCTGTGAACCTGTTACAGAAACTGCAAATCATTGGCTGCTGTTGATATGCTTTCTTTATGTATTTTGCAGGAGCTCTGAAAGTACGAGCAGCTTCCCGAAGCTTAAAAGGAATGCCTCAACTTCATCTGATATGAGTAGTCTGGCATCACAAGGCCCTCCAAATAATCCAGGTCATATTAAAATCTCTTGCACACAAAATTTGTCCTGAGGCTTCTGGTATTTTGCACCTATATCTGTTTCTCATGAGTCATGTTGTATTTGGTTAAACACTGCAGCTTCTCTCAGACGTGCTAGCAGCTGGACTTTTGATGAGAAGATTTTGGTGCAAGCAGTATACAAGGTACTGCATTCAGTATCTAAGAAGAACCCAATTGTTCTCTACATAAGAGATGTTGAGAAGTTTCTTCACAAGTCCAAAAAAATGTATGTCATGTTTGAAAAACTACTGAATAAACTTGAAGGGCCAGTGCTAGTCCTTGGCTCAAGAATTGTGGATATGGACTTTGATGAAGAGTTGGATGAAAGACTAACTGCTTTATTTCCATACAACATCGAAATCAAGCCACCAGAAAATGAGAACCACCTTGTGAGCTGGAACTCCCAATTAGAAGAAGATATGAAGATGATTCAGTTCCAGGATAACCGGAACCATATTACGGAAGTCCTTGCCGAAAACGACCTTGAGTGTGATGATTTAGGCTCGATATGCCTATCTGATACTATGGTTCTAGGTAGGTACATTGAGGAGATTGTGGTTTCAGCAGTTTCTTATCACCTGATGAATAAGAAAGATCCGGAGTACCGAAACGGAAAATTACTTCTATCTGCAAAGAGGTACTTAGCATTTTTGTATAGTTGTCTGTTGGTTTCTTCATCTCTTCTCCGCTTTATGACTCTCTCATGACACAGCTTGTCCCATGCACTGGAAATTTTTCAAGAGAACAAGATGTATGATAAGGATAGCATGAAGTTGGAAGCAAAGCGTGATGCTTCAAAGGTTTGTTTTATTTCTACTGCTTTTGGATTAACTTCATACGCTTCAGGAAATTCCGAATATTCTGTTGATTTGTAGTTATTCATGTTTTTTTTTTTAACGAACCGTTATTCATGTATTATGCCTCACATACAGGTGGCTGATAGGGGAATTGCTCCATTTGCTGCAAAATCAGAAACAAAACCTGCAACTTTGCTACCACCAGTACCTCCTACAGCTGCTGCTGCCCCTCCTGTTGAGAGCAAAGCAGAACCAGAGAAATTCGAGAAGAAGGATAATCCATCTCCAGCTGCAAAAGCACCTGTAAGAGCATTAATTAAAAGTCTAAAAGCACACGTGCACCAGCAAAACTATTACAGAACCGTTGGTTATTATGGAAGTGTCGTTCTGTTGAATGCTGTGCAGAGTAAAGCGTAGTTCCTTGAAATCAATTATTGAAAGGTTTTTTTATGACTTTGATATATCATACGTAGTTCTTAAAAAATATCTTGTGCCGTTTTATGTTACTTTCACAAGCCCCATGAATCTAATTTTGATAATGTGTAATTGCATCCTTTTCGTGTATTCAGGAAATGCTGCCAGACAATGAGTTTGAAAAGCGCATCAGACCTGAAGTGATACCTGCTAATGAAATCGGTGTCACATTTGATGATATTGGTGCATTAAGTGATATCAAAGAATCCCTTCAAGAACTTGTCATGCTCCCTCTCAGAAGACCAGATCTCTTCAAAGGGGGTCTTCTTAAACCTTGCAGAGGTATATTACTTTTTGGTCCTCCTGGAACTGGCAAGACGATGCTAGCCAAGGCTATTGCAAATGAAGCTCAAGCGAGTTTCATAAATGTTTCAATGTCGACTATCACATCGAAATGGTTTGGTGAAGATGAAAAGAATGTTAGAGCATTGTTCACATTAGCTGCCAAAGTATCACCGACGATCATTTTTGTCGATGAGGTCGACAGCATGCTTGGTCAGCGGAACAGAGCTGGAGAGCATGAGGCAATGAGGAAGATAAAAAATGAGTTCATGACACACTGGGATGGCCTCTTGTCAAGACCAGATCAAAAAATTCTTGTCCTTGCTGCGACCAACCGACCCTTTGATCTTGATGAAGCTATCATTCGAAGGTTTGAGCGCAGGTTTGCATCTCTTCCTTGCTAGATGCTAGTTCTCTCATCTGTATCTAAACTTTTTTTTAGCCCCTTTCGATTGTTCCAAGTTCCATGCCTGAGTGTGTTGCCTTGCTTCTTTAGGATCATGGTCGGCCTGCCATCATTGGAAAGTCGGGAATTGATTTTGAGGAGCCTTCTGTCGAAGGAGAAAGTTGATGGCGGTCTAGACTATAAGGAACTAGCCACCATGACTGAAGGATATAGTGGCAGTGATCTAAAGGTCAGTATCATAAGACATGAATCTATGTCAACCCAAAGAACTCTTTGGTTAACTCAGTAGTCTGCTGTGTGACAGAACCTGTGCACAACAGCAGCGTATCGTCCAGTGAGGGAACTGATCCAAAAGGAAAGAAAGAAGGAACTGGTAATCTAGTCACTGCGATACTTAAGCATTCACTGGAGACAATTTTTGTGAAATTTTATACTAAAAGTAAAATATATATGCCTAATATCTTCAGGAGAAGAAGAAGCGGGAACAAGGAGGCAATGCTTCAGATGCTTCGAAGATGAAAGAGAAGGACGAGACGATCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAGGTGAATCTTTTGTTACAGTTGAATTTAGAATTCTGAAACATGCACAGAACGTAATTCTTGCTAATATAAAACTGAAAAACTGTTAGCATTATACTTGCTTGTTAACAATTTGTGGAAACTTTGAAATGCAGGTGGCGGCAAGCTTTGCTGCTGAAGGAACAATAATGGGTGAGCTGAAGCAATGGAATGAGTTGTACGGTGAAGGAGGCTCCAGAAAGAAACAACAGTTGACATACTTTCTCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA002089