BGIOSGA001860
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Annotated Information
Function
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Expression
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Evolution
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Structured Information
| Gene Name |
BGIOSGA001860 |
|---|---|
| Description |
Retotransposon sine subfamily |
| Definition |
Oryza sativa Indica Group BGIOSGA001860, complete gene. |
| LocusTag |
P0469E05.27 |
| Ensembl Transcript ID |
BGIOSGA001860-TA |
| Ensembl Protein ID |
BGIOSGA001860-PA |
| Length |
2583 |
| Source |
Oryza sativa Indica Group ORGANISM Oryza sativa Indica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:11494241..11496823 |
| Sequence Coding Region |
11496494..11496823,11496322..11496382,11496125..11496219,11495935..11496047,11495566..11495839 |
| Genome Context |
<gbrowseImage1> name=IndicaChromosome01:11494241..11496823 source=RiceIndica01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=IndicaChromosome01:11494241..11496823 source=RiceIndica01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>ATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGTGGATTCTGTCATGCGCAGTTCTGCTTCATGCTTCTCCTGATGGATTGCTGAGAATTAGCCTGAATAAGAAGAGATTGGACAAGAAGACCTTGGACGGTGCAAAATTGGCAAGGGAGGAAAGCCATCGTCTGAGAGCCGACGGTTTAGGTGATGACATAGTTCCTTTGGACAACTACCTGGACACGCAGTACTTTGGAGAGATCGGCATCGGCACTCCACCACAGAACTTCACTGTGATATTCGACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTACAAAAAGAATGGAGAATCTTGCAGCATTTCCTATGGGTCTGGATCAATTGCTGGTTTCTTCAGTGAGGATAGCGTGCTAGTTGGGGATCTTGCTGTGAAAAATCAGATGTTCATTGAGACAACCAGGGAACCGAGCCTTACTTTCATCATCGGGAAGTTTGATGGAATTCTTGGACTTGGATTTCCGGAGATCTCTGTGGGAGGAGCCCCTCCAATTTGGCAGGGAATGAAAGAGCAGCAACTGATCGAGAAGGATGTATTTTCCTTCTGGCTCAACCGCGATCCTGATGCACCGACAGGGGGTGAGTTAATCTTTGGTGGTGTAGACCCAAATCATTACAAGGGGAGCCATACATATGTTCCTGTTACCCGCAAAGGCTACTGGCAGTTTGAGATGGGGGATCTTCTTATTGATGACTACTCAACTGGGTTCTGTTCTGGTGGTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACAACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGTATGGAATGCAAACAAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAGGCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCCTGCACTGCTTGCGAGATGGCTGTTGTCTGGATACAGAATCAGCTCCGACATAACCAAACAAGGGAGCTCATTTTGCAATATGCTGACCAGCTCTGCGAGCGTCTCCCAAGCCCCAATGGCGAATCGGCAGTCGACTGCGATGAGATCTCAAACATGCCGAACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGGATTCTTGGAGACGTGTTCATGGGTGCATACCACACTGTCTTCGACTTTGGCAAAAACAGGATTGGGTTCGCCGAGTCTGCTTGA</cdnaseq> |
| Protein Sequence |
<aaseq>MGRNHLCLVTCLWILSCAVLLHASPDGLLRISLNKKRLDKKTLDGAKLAREESHRLRADGLGDDIVPLDNYLDTQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSVKCYFSIACYLHHRYKSKGSSSYKKNGESCSISYGSGSIAGFFSEDSVLVGDLAVKNQMFIETTREPSLTFIIGKFDGILGLGFPEISVGGAPPIWQGMKEQQLIEKDVFSFWLNRDPDAPTGGELIFGGVDPNHYKGSHTYVPVTRKGYWQFEMGDLLIDDYSTGFCSGGCAAIADSGTSLLGGPTTIVAQINHAIGAEGIVSMECKQVVRDYGDMILEMLIAQASPMKLCSQIGLCAFDGTRSVRNNIESVVDKEKVGSDLSCTACEMAVVWIQNQLRHNQTRELILQYADQLCERLPSPNGESAVDCDEISNMPNLSFTIANKTFTLTPEQYVVKLEQQGQTVCISGFMAFDVPPPRGPLWILGDVFMGAYHTVFDFGKNRIGFAESA</aaseq> |
| Gene Sequence |
<dnaseqindica>1..330#442..502#605..699#777..889#985..1258#1463..1576#1686..1750#1857..1998#2086..2205#2295..2383#2499..2583#ATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGTGGATTCTGTCATGCGCAGTTCTGCTTCATGCTTCTCCTGATGGATTGCTGAGAATTAGCCTGAATAAGAAGAGATTGGACAAGAAGACCTTGGACGGTGCAAAATTGGCAAGGGAGGAAAGCCATCGTCTGAGAGCCGACGGTTTAGGTGATGACATAGTTCCTTTGGACAACTACCTGGACACGCAGTACTTTGGAGAGATCGGCATCGGCACTCCACCACAGAACTTCACTGTGATATTCGACACTGGAAGCTCCAACTTGTGGGTTCCATCAGTGAAATGTTATTTTTCGGTAGGTTCATCACCTAACAGACTTATGAAACTATTGTGCACGTATACAGTAGAAAATGACTGTATTTTTGTAAGGAAGAATGTTTGATGTTTTGATGTCTATGCTTTCCAGATAGCATGCTACTTACACCACAGGTACAAGTCAAAAGGGTCGAGCAGTTACAAAAAGAATGGTATGATAGATCCAGTGGCATCTCAATATTGTAGATCCTTTTGGCAAGTAAAACCAATGTCTATTAAGACCCTTATACTGTTATTGGGATTTTTATTTTCAGGAGAATCTTGCAGCATTTCCTATGGGTCTGGATCAATTGCTGGTTTCTTCAGTGAGGATAGCGTGCTAGTTGGGGATCTTGCTGTGAAAAATCAGGTGACTTATCGCACTATTGTCTCGGTAAAACATTTAGATGCATCATTGTTGATGCTGCAGGTCCATTTTTCTTTCAGATGTTCATTGAGACAACCAGGGAACCGAGCCTTACTTTCATCATCGGGAAGTTTGATGGAATTCTTGGACTTGGATTTCCGGAGATCTCTGTGGGAGGAGCCCCTCCAATTTGGTACCTACTCAGACCATTTTATAAATTGTGATTATGTCACTACCTAAGTGATGATTATGTTTTAACACTGTTCTATGTGATATGGGGAAAAACAGGCAGGGAATGAAAGAGCAGCAACTGATCGAGAAGGATGTATTTTCCTTCTGGCTCAACCGCGATCCTGATGCACCGACAGGGGGTGAGTTAATCTTTGGTGGTGTAGACCCAAATCATTACAAGGGGAGCCATACATATGTTCCTGTTACCCGCAAAGGCTACTGGCAGTTTGAGATGGGGGATCTTCTTATTGATGACTACTCAACTGGGTTCTGTTCTGGTGGTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACAGTATGAAACCTTCAATCTCTAACTAATGTTATGGTCCTTTAGTGTGGTACTAGAAGTTAACACAAATTAACACACAAAAAAAGTGGTACTTTGCAGTTTCTCATCTAGGAACGTAAAATACATCCTGATTGATGGAATGTGCATTTGAAAAATGTTTTGCAATCACAGTACAGCTTACATATTTGCCTTTTCTACTGCTGTCAGACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGTATGGAATGCAAACAAGTTGTGCGGGACTACGGGGACATGATCCTCGAGATGCTCATAGCACAGGTTTGCCACTTGTCTGAACATTGGATTGAATTTTTCTTGTGATGCTTCATTTTTTTTCATTGATCTTGGATTCTCTGACCAAATATAAAATAATTTTGTGACTGGGCAGGCAAGCCCCATGAAACTGTGCTCTCAGATTGGTCTCTGTGCATTTGATGGTACTCGTTCTGTCAGGTCAGCACAACACATACATGACATTTTAATTGCCATCTTAATATATCTATGTTCCTCCTTTTTGTTCCCTTTCCATGACAGACTTGTTTCACGAATGTATATGTAGAAACAATATAGAGTCTGTTGTTGATAAAGAAAAGGTGGGCTCAGATCTTTCCTGCACTGCTTGCGAGATGGCTGTTGTCTGGATACAGAATCAGCTCCGACATAACCAAACAAGGGAGCTCATTTTGCAATATGCTGACCAGGTAAGTAGTGATCATTACGTCCTTTGCTATGTCGCACCAGCCTTTCCTGATTGCAAAGCATAACATTCCAATCCCAATTTACCGAAGCTCTGCGAGCGTCTCCCAAGCCCCAATGGCGAATCGGCAGTCGACTGCGATGAGATCTCAAACATGCCGAACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGGTGGCTCCCTCAGTGACACACTTGGCCCATCCTCTTAAGCTATACTCATGCTTTTCTAAATCTCACCGTCGTCTTCTTCAACTATGCAGTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGGTACACAAATTACACTGTCATCAAGAAGCGGGAGCTCCATGTTGTTAGGTTCTTTGACCGTTTGACGTTTAGCTTCTCGTTATCTGACCCATCTTGTTGCATTGCGTTTTTGCAGGATTCTTGGAGACGTGTTCATGGGTGCATACCACACTGTCTTCGACTTTGGCAAAAACAGGATTGGGTTCGCCGAGTCTGCTTGA</dnaseqindica> |
| External Link(s) |
