BGIOSGA001340

From RiceWiki
Revision as of 18:10, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA001340

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA001340, complete gene.

LocusTag

OS01G0582400

Ensembl Transcript ID

BGIOSGA001340-TA

Ensembl Protein ID

BGIOSGA001340-PA

Length

4282

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:25070629..25074910

Sequence Coding Region

25074691..25074910,25074252..25074430,25074044..25074142,25073799..25073902,25073572..25073716
,25072171..25072393,25071945..25071984,25071184..25071391,25070874..25071014
,25070629..25070769

Genome Context

<gbrowseImage1> name=IndicaChromosome01:25070629..25074910 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:25070629..25074910 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCACGCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATTGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAACAACTGACCAAGGAACAGGAGGACAAAAAAAAGGAGACTGTTCAATCTGTCAGGGAGGCTTTAGTATCAAAAAAATCTGACTTCAGAGAGCTAGAGCATGATTCAGAAACAGATGATTATCCTGACGATGAAAACGAGGAGGATTTTGATAACAGAATGCGCTCTCAAATTCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGAGTGACGATGACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGACGTTAGCGAAGCTACAGAAGTTCAAGGCATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGA</cdnaseq>

Protein Sequence

<aaseq>MSSVYVLEPPTKGKVVVQTTAGPLDIELWPKEAPKAVRNFVQLCLEGYYDGTLFHRVIKSFLVQGGDPTGSGTGGESIYGAPFADEFHTRLRFNHRGLVACANAGTPHSNGSQFFISLDRCDWLDKKNTIFGKVTGDSIFNLLALADIETDKDDRPVYPQKILSVEVLWNPFDDIVPRQLKKTEPTAKGDIEGKSKKKAVKQLNVLSFGDEVEEEENEAASSVKDKIKSIHDVLDDPRFLKGEAPDEQLTKEQEDKKKETVQSVREALVSKKSDFRELEHDSETDDYPDDENEEDFDNRMRSQILRKRRELGDIRSSETSKKTDKAHRKDKELPVHRSDDDNDDDNEDHQLTKSRKFSMKKKGIGSEASAERMSKGDANLQLLNPAEQEKHLQKQKRRRLQGREDETLAKLQKFKASFLSKNPATGNTEKKTDEEDYTGWHSNRLTFEPDSSKDGMTRKDDPDDYVVVDPLLEKGKQKFNKMQAKLKRREREWAGRSLT</aaseq>

Gene Sequence

<dnaseqindica>1..220#481..659#769..867#1009..1112#1195..1339#2518..2740#2927..2966#3520..3727#3897..4037#4142..4282#ATGTCGTCGGTGTACGTGCTGGAGCCGCCGACGAAGGGCAAGGTGGTAGTGCAGACGACGGCCGGCCCGCTCGACATCGAGCTGTGGCCGAAGGAGGCCCCCAAGGCGGTGCGCAACTTCGTGCAGCTCTGCCTCGAGGGCTACTACGACGGCACGCTCTTCCACCGCGTCATCAAGTCCTTCCTCGTCCAGGGCGGCGACCCCACCGGCTCCGGCACCGGTGAGATCCCCAAATCCTTCGCCTATCTGTATCTAGGGTTTGTGATTCCAGACTGTACTGTTTGTTGGCCTGATTAGGTTGCTTGGGGGGGGGGGGTTGGATCGAATTGCTGAACAGTGACCGAAAAGTTAGTAGGATATATGCTGCCTGGTTAACAATTTGATTGTGTTAATTTGTTGGGTATGTGAGCCATAGTGTAATTGGGGAGTTGTATAATGCTTTTGAATTGAAGGTGATATGTGTCTAATTGCTATATGCAGGGGGTGAGAGCATATATGGGGCCCCATTTGCAGATGAGTTCCATACGCGCTTGAGGTTTAACCACAGGGGTTTAGTGGCGTGTGCCAATGCCGGCACGCCTCACTCGAATGGGAGTCAATTCTTTATCAGCCTTGACCGTTGTGATTGGCTCGATAAGAAGAATACCATCTTTGGGAAGGTACTGTGTTTGGCTTGATTATTGATCTCAGGGCGGTATTTGGTGCTATGCATTTGTCTCATTTAGGGTGATTATGGTTGCTTATTATGATGTTGTATGCTGTATGCAGGTCACTGGCGATTCTATTTTCAACCTTCTAGCCTTGGCTGATATTGAGACTGATAAGGATGATCGACCTGTGTATCCGCAGAAAATTCTTTCAGTTGAGGTTGTCTTTTGTTCTCTCGTTTTTGGTGCACTTCCACTTTGTTTTGGTACTTACAATTTGATGATATAGTACCTTCTAAAAACTATTTATGGTGAAGCCAACTTATTTAATGGTTAGCTACGTATGCTTCTAATTCTGAAGGTACTCTGGAACCCATTTGATGATATTGTTCCAAGGCAACTTAAGAAGACTGAGCCTACTGCCAAGGGTGATATCGAGGGGAAATCAAAGAAGAAAGCCGTTAAGTAAGTTGTCTGCCACTTCATGTTGCCCTTGAAAAGATAGGGAGATGTGCGTTTGTTTTGACTTGTTTTATTCATCATACAGGCAACTTAATGTGCTTTCATTTGGAGATGAAGTAGAAGAGGAGGAGAATGAGGCAGCATCCTCTGTGAAGGACAAAATAAAAAGTATTCACGATGTGTTGGATGATCCTCGGTTTCTTAAAGGAGAGGCACCGGATGAACAACTGGTGAGTAATATCATTTGTAGTTAGATAAGCCTTTAAAACTCGCAACTGGCCAGTGAACACACTCACAGTAACAATAACAGGACAAAACAAACTCTGCAGTAACGCTGCTGTTTCAGCACCTTACAGTATGAAATCAGGACTTGATGTGCTGTTTTTTCTACTTTACCAAGGAAGGTGGTTCATTTGAGCTGTTTATGTAGGTTATGTGTTTTCAGTTTTCACTAGTCCATAATACTTCATAGCCAAGTATCTAGCTACAAGACATTGAGTCAAAAAAGTATTTTTTTTAATAAATATTTCATACTAGGCCTCCTTTTGAACACATGATTTTTTTCCTGGTTCCTGAGAGAACTGAACCGCTTCCTAGAAATTCCTTTGTTACAAAGGAGGTCCTAGTTTATTTTCCAGGAAACATGTACTATGAACTCAGGACCACTCTGTACTTAGTACTAATCAGAATACTCTCATTTATGATCTGATTTCCTGTTATATGTTGTTCTTCAGTCATGCACAATCTGTCTTTTGTTACTTTAGGGCATAAACTGTTACTCTGCTATGGTTTTGCAATTACTGTGCCACCTTTAGATCAGATTAAGAGTTAACTTGTTAAGAGACATTACAGAGGAATGTCATCTTGGAACCATTACAATGGTCTCATTTAGAAAAATGCTATCGCGAACATGAAATATTCTGATAATTATCATTACCATCACATTTTCCATCCCATGGGTATGAAATGCCCATTCCCCCCTTCCCCCACACTTTTTACTTTCATTTTCTTTTCTTTTGTTGTTACTTAGGCAGTTTCACCTGTTATAACATACCAAAACTTGGAAGCATTTTTAAAAATCAGATTAAACATTTAATTTTCAAGCGAACAATTCTTTATGCAGATTTAATAAAGTATTTCTAATCCATGTAATTATCAAGTTCAAAATCTATTTTGCCTCCTTTCGAATTCTCTCACCAAAATAGATGTTAAGTGGATGGGAAATGTTGCAGCAGTAGTATTCCCCAGAATTTTTCATGTCTGATGATGGCATTTTACTACAGAAGACCTTTTGGATGGTATTTTTTTGCGTTCCTTTACGATGGCATTGGACATATTTACTTTATTATGAATTAGTTTTAGTTCCTCTTAAATGTAAAAAGTCATTGTGCTTATTCCAATCTTGCAGACCAAGGAACAGGAGGACAAAAAAAAGGAGACTGTTCAATCTGTCAGGGAGGCTTTAGTATCAAAAAAATCTGACTTCAGAGAGCTAGAGCATGATTCAGAAACAGATGATTATCCTGACGATGAAAACGAGGAGGATTTTGATAACAGAATGCGCTCTCAAATTCTAAGAAAACGCAGGGAGCTTGGGGACATCCGCTCTAGTGAAACCTCCAAAAAAACAGGTAAATTATCTTCCTGTTTATATTAGAAACATCAATATCCAACTGTTGAACAATTTGATAGTAGTGTAACAGTTTTAGCAGGTAGTGTGCTTCTGCAATTTCCTGCCAATGTTTGCAATTTTTTAATACTTACGGAATTATGATTGCTAAATATTGTTTGATACTTTGTTTTGTTGCTTGGTACAGATAAAGCACACCGTAAAGACAAGGAGTTACCAGTTCACAGGTTCATATCTACCATATCTCTGTATAACCTTATCTGTACCATACCTTTGAAATAGCTGTGTAATGTTGAAAAGGTTGTTTATTTCAAAGCCTCATTATTATGTAATATTGAACAACGGTGAACTGTACTTTTGCGATAGTTGAAAGAGGGGAGGAGGGGGATAAATCGGATTTGACCCTATTGAACAACTATAATATACCCCTTTTCGACTTCACTACTTAGCATGCAATCCTGCAGCCCCCTGAAATACCTCTCTCTTATACAATATTATATGATTATGTTCTGAAATGTCATGGTACAGTATTTACATTTAGTTATTGGCAAACTAATATTCAGGGTCGAGAATCTGTCTGAAACTCCAAATGGACTATCTTTCCAAACCAGAATAAATCTTAAAAGAAATGGTCTATTTCAATCTTAAAAGATTGGTTTATTTCTGTTCATCCTTTAACCGTAACGTGTTCAGAATCAGTGGACCATGCTGTACTGGACTTCTGAACTTCATTTTATTCCAATGGTTTTAGTAAATTTGTTACCTATCTGATGTTTGCAGGAGTGACGATGACAATGATGACGACAATGAAGACCACCAGCTAACCAAGTCTAGAAAATTTTCTATGAAGAAAAAAGGCATTGGCTCAGAAGCCAGTGCTGAAAGGATGTCCAAAGGCGATGCTAATTTGCAGCTATTGAATCCAGCTGAGCAAGAGAAGCATTTGCAAAAACAGAAAAGGCGCCGTCTTCAAGGCCGTGAAGATGAGGTAGTGATTTTTTTTTGCTTGTTTGCAATTTCAACATTTTTATCCCATGCCAAGATGTTCATGCCTATTCATATAATCATATTCCAATTAGCATCACATCTACTTCTTAGCTTCTATGTTCTCTAAGTTGAGCTGTGAAATGTTTCTTACCTGTTGTTTTTCTTGTTAGACGTTAGCGAAGCTACAGAAGTTCAAGGCATCGTTTCTCAGTAAGAACCCTGCAACTGGTAACACAGAAAAGAAGACTGATGAAGAGGATTACACAGGGTGGCACAGCAACCGGCTGACTTTTGAACCTGATTCTTCTAAGGTATGCTACCACACCCTCTACTTTTCTTGCTCATCTTTTTCAGCACACAAGTGGCAAATAGATTCATTATGTGCAGTGCCTGAGTTGTTATCTGATATTTACAGGATGGAATGACGAGGAAAGATGATCCAGATGACTATGTAGTGGTTGATCCTCTCCTTGAGAAAGGAAAACAAAAATTCAACAAGATGCAAGCAAAGCTTAAGCGGAGAGAACGTGAATGGGCAGGCAGATCTCTGACCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA001340