BGIOSGA012110

From RiceWiki
Revision as of 15:43, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA012110

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA012110, complete gene.

LocusTag

OS03G0213600

Ensembl Transcript ID

BGIOSGA012110-TA

Ensembl Protein ID

BGIOSGA012110-PA

Length

6070

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:6450211..6456280

Sequence Coding Region

6450211..6451450,6451717..6451780,6452355..6452576,6453145..6453266,6453622..6453903
,6453997..6454574,6455362..6455485,6455982..6456280

Genome Context

<gbrowseImage1> name=IndicaChromosome03:6450211..6456280 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:6450211..6456280 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCTTGAGGCAAAGGGATTTGCAAAGCCAAACTCTTCAAATAAGTATGGGATGCACAAATCTTCTGGTGGTACATATTCAAAACCTGATGCAAGAGTAAAGATAATTCCTGCAGAAGAAATTACATATGTACGTCATGGAAAACTATGTGGTAAAACTGTTGGCTCAGATGGATTACAGAAAAGGCAACGCAGACGAAGTGTCACCCCCCCTCCGAGTTCACGTAAAGTGTCTCTTGTGACACCTACAGTGGTTAATCAGAGGCCTACGCCACCAGTCTCACCAGCTGCCTCGCGTATCTCTCCTAACCGGCCTGGGACAGCTAAAAATGTTCACTCAGTCGTTACCTCATGTATCTCTCCAAACTTGACCGGGAAAGCTGAAAATGGTCACTCACTTGCTACCTCAGGTATCTCTCCTAACTGTCCTGGGGCAGTTAAAAAGATTCACTCACTTGCTACCTCACCTATCTCTCCTAACTGGCCTGGTGCAGTTAAAAAGATTCACTCACTTGCTACCTCACCTATCTCTCCTATGTGGCCTGAGACAGCTGGAAATGGTCACTCACTTGTTGGGGGCTATATCACAAATTCCTTTACAACACAAATAGCTTCCCTTTCACAGCGTCCATCACCATTCTGCAGGGCTGTTCTTTCACAGCCTTCTGGGACACCTCTTGGTACTGATGCCACTGCTCCCAAGAATCTTAGCAGATCGGGTAATAGAGAAGCATATGTCAAAAGTTGCAGTTCACGCACCAGAACCTTCTCATCTGCGCATGCACATTCAACTGTAGTTCCTCCTGGTACAAATGCAGAACCTTCTGCTGAAAGTTTTTGTGCGCCTGGCAATGAGAAGTCATCCCCTATGAGCTGTAAGTTGGGCACGTTACAATGTCAAGGCACAAGAACTGCTGTGGCGCCTTCAGTGCAAAAAAAGCTAACCATGGAGCCTGCATTACCGAGTCCAAAATCTGTGCTTAGTGAAAAGTCCAACGAGGCATATCCTGATACTGCTCCAAGGCCTTCTTCCAGACCAAATTTATTTGATACAAAATGCAAGGTGGGCTCACCGCAAAGTGAAACAATCATTCCTCCATCACAAAGTCCACAGTCTACATCTCATGCACGATGTGTTGAACCGCCTGATGATTTTGAAGCAGTTCCATCTACTAAGAGCCATATAATTACAGAAAAACAAATGAACCAGGAGGCACCAATCAATTGTAATGTATCTTCAGGTATCCCAGTAATTTTACATACAAAGCTGCACAAGAAGCATTACCAACCAGAAGCCTGCTGGAAGGGTAAATTTGAAGTGACTGGAGAGCTAACACATATTTGTGATGGACTTGAAGCCCATTTCCCTTTCGAAATTTCTGCCCAAGTATATGAGGCTTCAAAACAAATGCCTGAAATATTAAAGCTAGAGGCTAGACCTCTTTCTCATCTGTGGCCGAAAACATTCAAGATGAAACCTCCAGAAGGACAAGATATTGGACTGTGCTTCATTAGCTCTCTTCAAAGACCAAATGGGAGTTCTGACCATCTCCTGAAAAATATTTCTTCGCATATTGGGTTACGAACCAAGATTGGTGCTACTGAGTTGCTGATATTTTCATCCAAGTTACTTACCCAAGAATATCAAAGAAAATGTGATAAGTTTTACTTTTGGGGTGTTTTCCGGGCGCTGCACAGATCCTATAATCAAACAAGTATGTCATTTGATGCAACAGGATGCAAAGAGATTGAGAGGCACAAAAATAAGGAAACTGGCAAGATTTTGGAGACACAAGACAAAAAAACAGAGAAGGAAAAATGTGGGGAGATTGGTAATAAATTGGATTCGGCAGTTAGCAGAGAAAGAGATAGGATCAACGAATGCATGAGAATGCTGACTCCTGATCCAAATGCTGCGGCAAGCTCTTCAGTTACAGATTTTACTTGTCAATCTGCTCCTAGAGTTCCTGCTGGTTCTGACCTTGTTTTGGACACACCTCCCGGGTTTCCTCATGATGACCCTCCAGGCCTCACAAAAGCCCATTGTCTCCTCCATACAGGAGAAACCACTGAGCCTTACATAGACTCATCTCCAAGCCTTAATTTGGGCGTACCTCCAGGGCTTTCTCTTGATATCCCTCCTGGCTTTATGAAAGCTCAATATCTCCCTCATACAGGAGAAACTACTGAGTCTCACATAAACCCTTCTCACAGTCACAGCCTTTCTTGGGACACCCCTCTAGGATTTTCTCTTGATGTTCCTCCGGGATTTACTAAAGCCCATCGTCTACCCATAGTATCTACTGCTGGATCTGAAACTGTTGTTTCTGAAAAGAAACCCCTCATTAAGTTCACTCTGAATGTTCCAAGGGTTGCACAAACAGAAGCCATTCCTGGATTTATTAAACTGCTTGCAGTGAAACAAGAGCCTGGGTTGCCTGCAATCTGTATGGCCACAGAGAAGGCATCAACTGGAAAAGAAGATGAAATTAAAAGTAAGCAGGATGAGGTAGTAACAGAACGGGACGAAAGCTCAGAGGAGCGTTTGTTTCCAAAGACCAGGCTTCTTTCTGATATTCTGAGCTCTTCGGCTTCTTCTAATGCGAACACAAATGCTTCACCCAAGCCTACACGCAAGTTTCATGATGCACCAGACAACCAAATACAGGACAGAAAGAGAGATCACCCAGAATCACCCGAGCCTTCTCCTGCAGATACACTCAAAAGGCTCAGGGTGAATGGGCGCATAGCTCTAAACAGAGTCATGGATCGTCGAACATTGAGTTCCCAACCAATCTCAAGGGAAGGATTAGTTGATATACAAGTGTCAGGTCCTACAGTACTGACACGAGAAGCAAATGCTGTAGTTGGCAACATTTCAGGTGATGAATGTGCATGTTTTGTATGCAGCGAAGAGTTCCCAACGGGGTGA</cdnaseq>

Protein Sequence

<aaseq>MLEAKGFAKPNSSNKYGMHKSSGGTYSKPDARVKIIPAEEITYVRHGKLCGKTVGSDGLQKRQRRRSVTPPPSSRKVSLVTPTVVNQRPTPPVSPAASRISPNRPGTAKNVHSVVTSCISPNLTGKAENGHSLATSGISPNCPGAVKKIHSLATSPISPNWPGAVKKIHSLATSPISPMWPETAGNGHSLVGGYITNSFTTQIASLSQRPSPFCRAVLSQPSGTPLGTDATAPKNLSRSGNREAYVKSCSSRTRTFSSAHAHSTVVPPGTNAEPSAESFCAPGNEKSSPMSCKLGTLQCQGTRTAVAPSVQKKLTMEPALPSPKSVLSEKSNEAYPDTAPRPSSRPNLFDTKCKVGSPQSETIIPPSQSPQSTSHARCVEPPDDFEAVPSTKSHIITEKQMNQEAPINCNVSSGIPVILHTKLHKKHYQPEACWKGKFEVTGELTHICDGLEAHFPFEISAQVYEASKQMPEILKLEARPLSHLWPKTFKMKPPEGQDIGLCFISSLQRPNGSSDHLLKNISSHIGLRTKIGATELLIFSSKLLTQEYQRKCDKFYFWGVFRALHRSYNQTSMSFDATGCKEIERHKNKETGKILETQDKKTEKEKCGEIGNKLDSAVSRERDRINECMRMLTPDPNAAASSSVTDFTCQSAPRVPAGSDLVLDTPPGFPHDDPPGLTKAHCLLHTGETTEPYIDSSPSLNLGVPPGLSLDIPPGFMKAQYLPHTGETTESHINPSHSHSLSWDTPLGFSLDVPPGFTKAHRLPIVSTAGSETVVSEKKPLIKFTLNVPRVAQTEAIPGFIKLLAVKQEPGLPAICMATEKASTGKEDEIKSKQDEVVTERDESSEERLFPKTRLLSDILSSSASSNANTNASPKPTRKFHDAPDNQIQDRKRDHPESPEPSPADTLKRLRVNGRIALNRVMDRRTLSSQPISREGLVDIQVSGPTVLTREANAVVGNISGDECACFVCSEEFPTG</aaseq>

Gene Sequence

<dnaseqindica>1..1240#1507..1570#2145..2366#2935..3056#3412..3693#3787..4364#5152..5275#5772..6070#ATGCTTGAGGCAAAGGGATTTGCAAAGCCAAACTCTTCAAATAAGTATGGGATGCACAAATCTTCTGGTGGTACATATTCAAAACCTGATGCAAGAGTAAAGATAATTCCTGCAGAAGAAATTACATATGTACGTCATGGAAAACTATGTGGTAAAACTGTTGGCTCAGATGGATTACAGAAAAGGCAACGCAGACGAAGTGTCACCCCCCCTCCGAGTTCACGTAAAGTGTCTCTTGTGACACCTACAGTGGTTAATCAGAGGCCTACGCCACCAGTCTCACCAGCTGCCTCGCGTATCTCTCCTAACCGGCCTGGGACAGCTAAAAATGTTCACTCAGTCGTTACCTCATGTATCTCTCCAAACTTGACCGGGAAAGCTGAAAATGGTCACTCACTTGCTACCTCAGGTATCTCTCCTAACTGTCCTGGGGCAGTTAAAAAGATTCACTCACTTGCTACCTCACCTATCTCTCCTAACTGGCCTGGTGCAGTTAAAAAGATTCACTCACTTGCTACCTCACCTATCTCTCCTATGTGGCCTGAGACAGCTGGAAATGGTCACTCACTTGTTGGGGGCTATATCACAAATTCCTTTACAACACAAATAGCTTCCCTTTCACAGCGTCCATCACCATTCTGCAGGGCTGTTCTTTCACAGCCTTCTGGGACACCTCTTGGTACTGATGCCACTGCTCCCAAGAATCTTAGCAGATCGGGTAATAGAGAAGCATATGTCAAAAGTTGCAGTTCACGCACCAGAACCTTCTCATCTGCGCATGCACATTCAACTGTAGTTCCTCCTGGTACAAATGCAGAACCTTCTGCTGAAAGTTTTTGTGCGCCTGGCAATGAGAAGTCATCCCCTATGAGCTGTAAGTTGGGCACGTTACAATGTCAAGGCACAAGAACTGCTGTGGCGCCTTCAGTGCAAAAAAAGCTAACCATGGAGCCTGCATTACCGAGTCCAAAATCTGTGCTTAGTGAAAAGTCCAACGAGGCATATCCTGATACTGCTCCAAGGCCTTCTTCCAGACCAAATTTATTTGATACAAAATGCAAGGTGGGCTCACCGCAAAGTGAAACAATCATTCCTCCATCACAAAGTCCACAGTCTACATCTCATGCACGATGTGTTGAACCGCCTGATGATTTTGAAGCAGTTCCATCTACTAAGAGCCATATAATTACAGAAAAACAAATGAACCAGGAGGCACCAATCAATTGTAATGTATCTTCAGGTACAGTGTGGATCCTGACAGTAATCTCTTCTATTCTTTCATCTACATATTTAAAATAGCTGACATTAATAGTACTGTAGCATCCAGACATCCCTGCATTTAGCCCTTCAATTATTATGCTTATTGAAAATTGAAAAGGTGAAAAAAGTGAAAGCAGCGGTACTAAGTTTTAGCCATGGGCATGCCATTTTACCTTGTGGAGATTTATTGATGAAAAACTTATTTTGAGAACACTGCTGTAGTAACATTGGTATTGGTGCAAACAGGTATCCCAGTAATTTTACATACAAAGCTGCACAAGAAGCATTACCAACCAGAAGCCTGCTGGAAGTAAGTAATTTACTTCATGCATTAGAGTATTTTTGAATTATCACTAGAATTTATTTTTATCACACTGTATTTTACCAGTTACATGCCCTATATTTATCTGACCGGATAAGCTGTAGCTACCGTGTTGTATAAAAAATTGTTTTGGGATCAATTACAAACTCAAAGTTATCAAAAGTTGTCCTCAAATTTGATGTACTAATGGATGAAATTGGCATTCTTGTCTAAAAAAGAGCATTGTTTTTTTTTCACTTGCATTATAAGCCTTGAATCTTGTCTGGTATGGATGAAGCTAATCAGCAAATATAGTTGATTAGCAGAGTATCTGCAGAATTATCTTGAGCTTTTTTGTGCCAGTGATAATGTGGTAAGCTATATAGTATCTCAGAACAATTTTCACATGTATGATAAGTGATGCTGCTTCTGTTTTTGGAATTATTATGCAATTTGGAAGTGTTGAACTTTTATCCAATGCTGAAGTTAAGTTATAATGGAAAATCTGTGAGACTTTGCTATTTTAGTATACGTGTGTTTGATTTTCAGTTAAACATTGAGGCTCTGTTTCCATGTTCTTTAGGGGTAAATTTGAAGTGACTGGAGAGCTAACACATATTTGTGATGGACTTGAAGCCCATTTCCCTTTCGAAATTTCTGCCCAAGTATATGAGGCTTCAAAACAAATGCCTGAAATATTAAAGCTAGAGGCTAGACCTCTTTCTCATCTGTGGCCGAAAACATTCAAGATGAAACCTCCAGAAGGACAAGATATTGGACTGTGCTTCATTAGCTCTCTTCAAAGGTACAACCCCTCAAATCAATGCTTCTACTTACTTTCCTTTTGTTCCTCTCACTTGTCTCAATGGCATGTGGGCCTGCTGGTATGGACCCAACTCATTATTTATAAAATGAGGAAGTTCTCAGATGTTTAGTGGCATGATAGAAATTAACCTCAGAAGTATCACCAATGATTTTTGGTGCGTTCAGCCACATCATCTGTCATATCCTAACAAGTACTACCTCCATCCCAAAATATAAGAAGTTTTGGGGTTGAACACGGGTATTAAGGAAGTAGGTGGAATGAAATGGGTGAATGTTATGATTTGTTGAGAAAAGGAGGTAGGTGGAGAAATTAAATGTGGAAGGTTTTGATTGGTTGAGAGGAGAATGTAAGTGGAAAATTTGCTATATTTTGGGACGGAGGGAGTATTCGTTTCAGTTACCGGCAATTGAAAACCGATTCAACAATTTATCTCTGAAAAATAAATGCGAGTGCTTTTGGAGTTTAATCTCTTTTTGTCAACTACAGAATGCAGCTGTGTGCATGAAGCTTATCTGCATTTATGTGTTTTCTCTCTTTTTCTTTGCAGACCAAATGGGAGTTCTGACCATCTCCTGAAAAATATTTCTTCGCATATTGGGTTACGAACCAAGATTGGTGCTACTGAGTTGCTGATATTTTCATCCAAGTTACTTACCCAAGAATATCAAAGTATGTTCCATGATCCTTTTTATGTCCCATTTCCATTATAAACCATGTCATGTATCCCCCCATAACTGACAATGCTTGGACTTGTTACACTTGTATGCTTAAACAAACTGATGCTGTGATGCATGCATATCTCAAAGTTACTATTTGGTAATCTTATTTGTATGAATATTTTTTTAATTTGATTTTTTTGTGATACCTGTTTTTGATTCGTCGCAGTAGTTTCTCTTGCAACCAGATGAAATCACATGGAGTTTGCATGAGCATAGCTGTACAGTCCCTGTTAAATGTTTTAAAAAGTGGTATGCATGTACAAATTTATCATCTAACCTTTTCTGTATAATTACCAATTTAACAGGAAAATGTGATAAGTTTTACTTTTGGGGTGTTTTCCGGGCGCTGCACAGATCCTATAATCAAACAAGTATGTCATTTGATGCAACAGGATGCAAAGAGATTGAGAGGCACAAAAATAAGGAAACTGGCAAGATTTTGGAGACACAAGACAAAAAAACAGAGAAGGAAAAATGTGGGGAGATTGGTAATAAATTGGATTCGGCAGTTAGCAGAGAAAGAGATAGGATCAACGAATGCATGAGAATGCTGACTCCTGATCCAAATGCTGCGGCAAGCTCTTCAGGTACAATTGCTTTTTTGTATGGGCCGGCACATCTTGTTATTCTACTGATTTGTTTTTTGTTCATCCATGATTTGCTTATTATACTTCCTCTAGTTACAGATTTTACTTGTCAATCTGCTCCTAGAGTTCCTGCTGGTTCTGACCTTGTTTTGGACACACCTCCCGGGTTTCCTCATGATGACCCTCCAGGCCTCACAAAAGCCCATTGTCTCCTCCATACAGGAGAAACCACTGAGCCTTACATAGACTCATCTCCAAGCCTTAATTTGGGCGTACCTCCAGGGCTTTCTCTTGATATCCCTCCTGGCTTTATGAAAGCTCAATATCTCCCTCATACAGGAGAAACTACTGAGTCTCACATAAACCCTTCTCACAGTCACAGCCTTTCTTGGGACACCCCTCTAGGATTTTCTCTTGATGTTCCTCCGGGATTTACTAAAGCCCATCGTCTACCCATAGTATCTACTGCTGGATCTGAAACTGTTGTTTCTGAAAAGAAACCCCTCATTAAGTTCACTCTGAATGTTCCAAGGGTTGCACAAACAGAAGCCATTCCTGGATTTATTAAACTGCTTGCAGTGAAACAAGAGCCTGGGTTGCCTGCAATCTGTATGGCCACAGAGAAGGCATCAACTGGAAAAGAAGATGAAATTAAAAGTAAGCAGGATGAGGTACAACATGGTTCCCATCCTAATTATTTTAATAATCCCATGCTTTCTAAATTATCTTTAATTTCCTTTTCCTTAAACGAGATTTTATTGTCCTTTACCAACCATTGCCAATTTGTCCCATGTTCTAGTAAGCCGTGTTGTGTTATGTTCAATGTGTTCCCAATACTTTAATGGCAGAACCTCAGAATTATTTTAAGTGCATGTGTGCATATGTACTGCTCCGTTTGTGCATTATTTCACACCAATGTTTTGCTCATGGAATCACATTCCAGTAAGCTGCTGCTAGTATGGAAAAAAATACTCCCTGATTTTTGTTCAAAACATGATGAGAATTGTTTCTGAGGCTTTTGGTTCTTGATTTGCCTGATGATAGTTTACTTGCGGTTTCATGGATTGAAACCCTTCAAAAATCCTTTACATCTCTTCTAATAGTTGTTTCAGACTTTCAATGAAGCAGGGTATCTTTTGTTGAAATGCCAAAATTTAGGTATCATTTTGTTGTTTGCTCCTTGTGGCTTCAATCATAGCCATGTTTTGCTTCTTAAAAAAAATTCTGCGAGTAAAAAAAAAGTTATCTTCAGTAAATGTGAAGACGAGTTTATGCTATTTAAGTAAATGTGAAGTCAGAGGCTGAATTTTAGCCATATATTTGTGTTCCTACTTCACAATGCATTTTTATAGTTTCCAATTATCTTCCGTCTTTGTGCCTTGCACGATGTATTGACTTGCATTCCATTTGAATGATATATTCATTGTTTAGCTGATATTAGCAGCTGTACTAGTGCAGGTAGTAACAGAACGGGACGAAAGCTCAGAGGAGCGTTTGTTTCCAAAGACCAGGCTTCTTTCTGATATTCTGAGCTCTTCGGCTTCTTCTAATGCGAACACAAATGCTTCACCCAAGCCTACACGTATTCATCTTTTTTTTTCTAAATTTCACAAAACTACAAATACTATGACCAATCTATCACAAAACTACATATTTAACTCGGTGCATCACAAAACTAAACATTTAACACCAAGTTTATCGTAAAACTACACATTTAAGATGAAGTGTCACAAAACTACATGTTTTTAGTAACTAAATTATCACAAAACTATAAGTTTAGAACCAATTTAGTCATAAAACAATAATGTTTATAGCTCCAGCATAATAGTGGTGCTAGGGATTTAAACTCTAAAAGTTATTGTTTGTGATAACTTAAATATTAAATATGCAGTTTTGTGATACTTAACCTTAAATCTATAGTTTTGTGATAAATATGGTGTTAAATCTGTAGTTTTGTGATACGTCTTAAATCTGTAGTTTTATGATTGTTTGATAAAAATACATGTAGATTTATGAAATTTACTCAAAAAAAACAAGTATTCATATAAACTGAACTGAAGTTTGTGGACCTTCTGCAGGCAAGTTTCATGATGCACCAGACAACCAAATACAGGACAGAAAGAGAGATCACCCAGAATCACCCGAGCCTTCTCCTGCAGATACACTCAAAAGGCTCAGGGTGAATGGGCGCATAGCTCTAAACAGAGTCATGGATCGTCGAACATTGAGTTCCCAACCAATCTCAAGGGAAGGATTAGTTGATATACAAGTGTCAGGTCCTACAGTACTGACACGAGAAGCAAATGCTGTAGTTGGCAACATTTCAGGTGATGAATGTGCATGTTTTGTATGCAGCGAAGAGTTCCCAACGGGGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA012110